Wall clock time and date at job start Tue Mar 31 2020 05:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21271 * 120.00107 * 2 1 4 4 N 1.34776 * 119.99707 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99892 * 184.67273 * 4 2 1 6 6 H 1.09004 * 109.47041 * 31.91282 * 5 4 2 7 7 C 1.50699 * 109.47655 * 271.91007 * 5 4 2 8 8 O 1.21283 * 119.99448 * 0.02562 * 7 5 4 9 9 N 1.34770 * 120.00184 * 179.97438 * 7 5 4 10 10 C 1.46499 * 119.99880 * 180.02562 * 9 7 5 11 11 H 1.08999 * 109.47270 * 324.99768 * 10 9 7 12 12 C 1.53000 * 109.47443 * 84.99940 * 10 9 7 13 13 C 1.50706 * 109.47116 * 205.00157 * 10 9 7 14 14 H 1.07997 * 120.00002 * 359.97438 * 13 10 9 15 15 C 1.37874 * 119.99956 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00379 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 119.99984 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46842 * 60.00486 * 17 15 13 19 19 H 1.48494 * 109.47268 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47088 * 300.00570 * 17 15 13 21 21 C 1.53001 * 109.47033 * 151.90997 * 5 4 2 22 22 C 1.54268 * 110.03435 * 57.93467 * 21 5 4 23 23 C 1.54887 * 104.19885 * 217.10791 * 22 21 5 24 24 C 1.54892 * 102.74878 * 37.93868 * 23 22 21 25 25 C 1.53878 * 110.03380 * 300.76863 * 21 5 4 26 26 H 1.09002 * 109.46711 * 269.99817 * 1 2 3 27 27 H 1.09002 * 109.47059 * 29.99364 * 1 2 3 28 28 H 1.08998 * 109.47418 * 149.99977 * 1 2 3 29 29 H 0.96999 * 120.00181 * 4.68009 * 4 2 1 30 30 H 0.97000 * 120.00551 * 359.72902 * 9 7 5 31 31 H 1.09003 * 109.47002 * 60.00181 * 12 10 9 32 32 H 1.08998 * 109.46943 * 180.02562 * 12 10 9 33 33 H 1.08994 * 109.46738 * 300.00192 * 12 10 9 34 34 H 0.96999 * 120.00156 * 179.97438 * 16 15 13 35 35 H 1.08998 * 110.01823 * 179.37580 * 21 5 4 36 36 H 1.09003 * 110.48303 * 335.78537 * 22 21 5 37 37 H 1.08998 * 110.48605 * 98.42243 * 22 21 5 38 38 H 1.09002 * 110.75364 * 279.63110 * 23 22 21 39 39 H 1.08993 * 110.91933 * 156.32430 * 23 22 21 40 40 H 1.09007 * 110.48476 * 203.38644 * 24 23 22 41 41 H 1.08994 * 110.59725 * 80.79205 * 24 23 22 42 42 H 1.09007 * 110.02990 * 238.57182 * 25 21 5 43 43 H 1.09001 * 110.03183 * 359.94807 * 25 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6421 -1.1694 0.1028 6 1 3.9650 -0.3207 0.7058 7 6 4.2435 -1.0644 -1.2750 8 8 3.5223 -0.9941 -2.2475 9 7 5.5825 -1.0475 -1.4264 10 6 6.1670 -0.9449 -2.7658 11 1 5.5426 -1.4853 -3.4771 12 6 6.2493 0.5271 -3.1749 13 6 7.5507 -1.5420 -2.7572 14 1 7.9545 -1.9561 -1.8451 15 6 8.3011 -1.5596 -3.9137 16 7 7.8097 -1.0549 -5.0243 17 14 10.0165 -2.2991 -3.9029 18 1 9.9372 -3.7276 -3.5050 19 1 10.6090 -2.1952 -5.2605 20 1 10.8672 -1.5621 -2.9343 21 6 4.1047 -2.4697 0.7634 22 6 3.6100 -3.6820 -0.0524 23 6 3.2531 -4.7412 1.0198 24 6 2.6314 -3.8859 2.1517 25 6 3.4825 -2.5994 2.1648 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6982 -2.0058 -0.0694 30 1 6.1594 -1.0991 -0.6482 31 1 6.8739 1.0675 -2.4636 32 1 6.6838 0.6034 -4.1717 33 1 5.2486 0.9589 -3.1811 34 1 8.3378 -1.0669 -5.8378 35 1 5.1923 -2.4856 0.8347 36 1 2.7275 -3.4157 -0.6341 37 1 4.4011 -4.0512 -0.7050 38 1 4.1493 -5.2531 1.3704 39 1 2.5274 -5.4568 0.6335 40 1 2.7085 -4.4040 3.1076 41 1 1.5905 -3.6524 1.9282 42 1 4.2682 -2.6790 2.9162 43 1 2.8518 -1.7356 2.3747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330639008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:34 Heat of formation + Delta-G solvation = -95.276837 kcal Electronic energy + Delta-G solvation = -23443.129607 eV Core-core repulsion = 20101.330883 eV Total energy + Delta-G solvation = -3341.798723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.39290 -38.45645 -37.75791 -34.82617 -33.97087 -32.40980 -31.06175 -29.18096 -28.80095 -28.40395 -25.32231 -25.07534 -21.40513 -21.18179 -20.24979 -19.89034 -19.08259 -17.40380 -16.99674 -16.26341 -15.85207 -15.38545 -15.04348 -14.79317 -14.64182 -14.17333 -13.88185 -13.44799 -13.24721 -12.98205 -12.82583 -12.52160 -12.32481 -12.12430 -11.63412 -11.36900 -11.22882 -11.11163 -11.07866 -10.95804 -10.80116 -10.71233 -10.65427 -10.60505 -10.29150 -10.19495 -9.77104 -9.56920 -9.01536 -8.57492 -8.46167 -7.84716 -6.09278 -4.18806 2.77973 3.25918 3.26548 3.32018 3.33210 3.43869 4.16067 4.37978 4.49992 4.51886 4.66833 4.88759 5.10581 5.19347 5.22511 5.31864 5.34147 5.35675 5.41982 5.51913 5.55799 5.68151 5.72978 5.80847 5.81811 5.87847 6.00807 6.15770 6.23123 6.29423 6.53212 6.89202 7.05465 7.21622 7.51800 7.60163 7.62032 7.73024 7.95872 8.19188 8.37094 8.71524 8.81711 9.18118 9.48798 10.96557 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.005105 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.312981 B = 5483.645181 C = 6582.179040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.514 3.486 3 O -0.544 6.544 4 N -0.703 5.703 5 C 0.130 3.870 6 H 0.108 0.892 7 C 0.495 3.505 8 O -0.547 6.547 9 N -0.707 5.707 10 C 0.267 3.733 11 H 0.047 0.953 12 C -0.147 4.147 13 C -0.532 4.532 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.884 5.884 17 Si 0.901 3.099 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.095 4.095 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.119 4.119 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.401 0.599 30 H 0.387 0.613 31 H 0.026 0.974 32 H 0.089 0.911 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.500 -5.699 14.911 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.421 6.421 4 N -0.356 5.356 5 C 0.021 3.979 6 H 0.125 0.875 7 C 0.278 3.722 8 O -0.425 6.425 9 N -0.355 5.355 10 C 0.165 3.835 11 H 0.065 0.935 12 C -0.206 4.206 13 C -0.571 4.571 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.729 3.271 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.114 4.114 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.157 4.157 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.237 0.763 30 H 0.219 0.781 31 H 0.045 0.955 32 H 0.107 0.893 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.526 -4.844 13.990 18.763 hybrid contribution 1.091 -0.737 0.177 1.328 sum -10.435 -5.581 14.168 18.460 Atomic orbital electron populations 1.21838 0.91885 1.04915 1.04241 1.20727 0.90493 0.83505 0.75220 1.90728 1.70708 1.31434 1.49264 1.45699 1.06061 1.08979 1.74843 1.20975 0.81525 0.99806 0.95599 0.87462 1.20701 0.83538 0.77353 0.90615 1.90637 1.60606 1.50503 1.40750 1.46486 1.05151 1.72081 1.11801 1.18701 0.92953 0.93593 0.78233 0.93544 1.22071 0.97531 0.97565 1.03401 1.21173 0.99631 1.40006 0.96282 0.92170 1.24888 0.98399 0.95132 0.95269 1.69902 1.37490 1.44437 1.00267 0.86519 0.83830 0.79582 0.77209 1.20215 1.21162 1.20175 1.22062 1.01492 0.93010 0.94862 1.22467 1.01806 0.94423 0.97552 1.22499 1.00593 0.97372 0.95667 1.22362 0.99093 0.95878 0.98761 1.22205 0.99327 0.98241 0.95923 0.89138 0.88980 0.90288 0.76294 0.78119 0.95510 0.89257 0.96679 0.92560 0.88845 0.91328 0.90535 0.91347 0.91594 0.91813 0.91823 0.91452 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.31 36.01 0.37 -1.26 16 2 C 0.51 7.63 7.89 -10.98 -0.09 7.54 16 3 O -0.54 -10.77 16.76 5.56 0.09 -10.68 16 4 N -0.70 -9.47 3.70 -54.93 -0.20 -9.67 16 5 C 0.13 1.95 1.95 -69.08 -0.13 1.82 16 6 H 0.11 1.66 7.55 -51.93 -0.39 1.27 16 7 C 0.50 10.12 6.55 -10.99 -0.07 10.05 16 8 O -0.55 -13.47 16.07 5.56 0.09 -13.38 16 9 N -0.71 -15.01 4.96 -54.93 -0.27 -15.28 16 10 C 0.27 6.95 2.56 -69.08 -0.18 6.77 16 11 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 12 C -0.15 -3.86 9.26 37.16 0.34 -3.52 16 13 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 16 N -0.88 -25.24 11.32 55.43 0.63 -24.61 16 17 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 C -0.09 -1.11 2.71 -89.50 -0.24 -1.35 16 22 C -0.12 -1.48 5.49 -25.07 -0.14 -1.62 16 23 C -0.12 -1.12 6.91 -24.74 -0.17 -1.29 16 24 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 25 C -0.12 -1.09 6.18 -25.61 -0.16 -1.25 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.40 4.38 6.86 -40.82 -0.28 4.10 16 30 H 0.39 7.10 7.99 -40.82 -0.33 6.78 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.09 1.09 7.59 -51.93 -0.39 0.69 16 36 H 0.07 0.85 6.21 -51.93 -0.32 0.53 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.64 7.35 -51.93 -0.38 0.26 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -34.11 347.14 -7.48 -41.59 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.00 Total: 9.14 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.03 Total: 1.98 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.15 Total: -49.57 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.18 Total: -24.06 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.11 -7.48 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330639008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.689 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds