Wall clock time and date at job start Tue Mar 31 2020 05:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21271 * 120.00107 * 2 1 4 4 N 1.34776 * 119.99707 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99892 * 184.67273 * 4 2 1 6 6 H 1.09004 * 109.47041 * 31.91282 * 5 4 2 7 7 C 1.50699 * 109.47655 * 271.91007 * 5 4 2 8 8 O 1.21283 * 119.99448 * 0.02562 * 7 5 4 9 9 N 1.34770 * 120.00184 * 179.97438 * 7 5 4 10 10 C 1.46499 * 119.99880 * 180.02562 * 9 7 5 11 11 H 1.08999 * 109.47270 * 324.99768 * 10 9 7 12 12 C 1.53000 * 109.47443 * 84.99940 * 10 9 7 13 13 C 1.50706 * 109.47116 * 205.00157 * 10 9 7 14 14 H 1.07997 * 120.00002 * 359.97438 * 13 10 9 15 15 C 1.37874 * 119.99956 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00379 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 119.99984 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46842 * 60.00486 * 17 15 13 19 19 H 1.48494 * 109.47268 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47088 * 300.00570 * 17 15 13 21 21 C 1.53001 * 109.47033 * 151.90997 * 5 4 2 22 22 C 1.54268 * 110.03435 * 57.93467 * 21 5 4 23 23 C 1.54887 * 104.19885 * 217.10791 * 22 21 5 24 24 C 1.54892 * 102.74878 * 37.93868 * 23 22 21 25 25 C 1.53878 * 110.03380 * 300.76863 * 21 5 4 26 26 H 1.09002 * 109.46711 * 269.99817 * 1 2 3 27 27 H 1.09002 * 109.47059 * 29.99364 * 1 2 3 28 28 H 1.08998 * 109.47418 * 149.99977 * 1 2 3 29 29 H 0.96999 * 120.00181 * 4.68009 * 4 2 1 30 30 H 0.97000 * 120.00551 * 359.72902 * 9 7 5 31 31 H 1.09003 * 109.47002 * 60.00181 * 12 10 9 32 32 H 1.08998 * 109.46943 * 180.02562 * 12 10 9 33 33 H 1.08994 * 109.46738 * 300.00192 * 12 10 9 34 34 H 0.96999 * 120.00156 * 179.97438 * 16 15 13 35 35 H 1.08998 * 110.01823 * 179.37580 * 21 5 4 36 36 H 1.09003 * 110.48303 * 335.78537 * 22 21 5 37 37 H 1.08998 * 110.48605 * 98.42243 * 22 21 5 38 38 H 1.09002 * 110.75364 * 279.63110 * 23 22 21 39 39 H 1.08993 * 110.91933 * 156.32430 * 23 22 21 40 40 H 1.09007 * 110.48476 * 203.38644 * 24 23 22 41 41 H 1.08994 * 110.59725 * 80.79205 * 24 23 22 42 42 H 1.09007 * 110.02990 * 238.57182 * 25 21 5 43 43 H 1.09001 * 110.03183 * 359.94807 * 25 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6421 -1.1694 0.1028 6 1 3.9650 -0.3207 0.7058 7 6 4.2435 -1.0644 -1.2750 8 8 3.5223 -0.9941 -2.2475 9 7 5.5825 -1.0475 -1.4264 10 6 6.1670 -0.9449 -2.7658 11 1 5.5426 -1.4853 -3.4771 12 6 6.2493 0.5271 -3.1749 13 6 7.5507 -1.5420 -2.7572 14 1 7.9545 -1.9561 -1.8451 15 6 8.3011 -1.5596 -3.9137 16 7 7.8097 -1.0549 -5.0243 17 14 10.0165 -2.2991 -3.9029 18 1 9.9372 -3.7276 -3.5050 19 1 10.6090 -2.1952 -5.2605 20 1 10.8672 -1.5621 -2.9343 21 6 4.1047 -2.4697 0.7634 22 6 3.6100 -3.6820 -0.0524 23 6 3.2531 -4.7412 1.0198 24 6 2.6314 -3.8859 2.1517 25 6 3.4825 -2.5994 2.1648 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6982 -2.0058 -0.0694 30 1 6.1594 -1.0991 -0.6482 31 1 6.8739 1.0675 -2.4636 32 1 6.6838 0.6034 -4.1717 33 1 5.2486 0.9589 -3.1811 34 1 8.3378 -1.0669 -5.8378 35 1 5.1923 -2.4856 0.8347 36 1 2.7275 -3.4157 -0.6341 37 1 4.4011 -4.0512 -0.7050 38 1 4.1493 -5.2531 1.3704 39 1 2.5274 -5.4568 0.6335 40 1 2.7085 -4.4040 3.1076 41 1 1.5905 -3.6524 1.9282 42 1 4.2682 -2.6790 2.9162 43 1 2.8518 -1.7356 2.3747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330639008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:34 Heat of formation + Delta-G solvation = -119.518220 kcal Electronic energy + Delta-G solvation = -23444.180792 eV Core-core repulsion = 20101.330883 eV Total energy + Delta-G solvation = -3342.849909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.69371 -39.90549 -38.92561 -36.75053 -35.22401 -34.36443 -32.29141 -30.73637 -29.63538 -29.54346 -27.38460 -26.38907 -23.17343 -22.15814 -21.55601 -21.07374 -20.45624 -19.10072 -18.07901 -17.65815 -17.54537 -16.83559 -16.40450 -16.07120 -15.92442 -15.76685 -15.18967 -14.76861 -14.50482 -14.22440 -14.15130 -14.06021 -13.67250 -13.29161 -13.01844 -12.99504 -12.88940 -12.77124 -12.32357 -12.29908 -12.14950 -11.95995 -11.89473 -11.78550 -11.58741 -11.39850 -11.15418 -11.05836 -10.96416 -10.61425 -9.99449 -9.76826 -8.18019 -6.36318 1.44237 1.46945 1.54608 1.59418 1.78113 2.15360 2.38360 2.71441 3.12125 3.54008 3.59074 3.75206 3.91758 4.02155 4.26467 4.32221 4.51376 4.56619 4.59999 4.67082 4.67553 4.71397 4.80287 4.85965 4.88865 5.00367 5.05693 5.06781 5.15008 5.30201 5.31987 5.33322 5.40463 5.46095 5.54732 5.59211 5.63929 5.87371 6.06432 6.53297 6.71032 6.92342 7.25583 7.31128 7.52867 8.88364 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.005105 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.312981 B = 5483.645181 C = 6582.179040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.503 3.497 3 O -0.602 6.602 4 N -0.693 5.693 5 C 0.142 3.858 6 H 0.106 0.894 7 C 0.489 3.511 8 O -0.594 6.594 9 N -0.703 5.703 10 C 0.275 3.725 11 H -0.003 1.003 12 C -0.133 4.133 13 C -0.545 4.545 14 H 0.076 0.924 15 C 0.013 3.987 16 N -0.920 5.920 17 Si 0.975 3.025 18 H -0.268 1.268 19 H -0.287 1.287 20 H -0.264 1.264 21 C -0.090 4.090 22 C -0.128 4.128 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.112 4.112 26 H 0.124 0.876 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.415 0.585 30 H 0.403 0.597 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.001 0.999 34 H 0.265 0.735 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.702 -7.267 17.628 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.293 3.707 3 O -0.483 6.483 4 N -0.346 5.346 5 C 0.033 3.967 6 H 0.124 0.876 7 C 0.275 3.725 8 O -0.475 6.475 9 N -0.352 5.352 10 C 0.171 3.829 11 H 0.015 0.985 12 C -0.192 4.192 13 C -0.583 4.583 14 H 0.094 0.906 15 C -0.186 4.186 16 N -0.558 5.558 17 Si 0.799 3.201 18 H -0.192 1.192 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.109 4.109 22 C -0.166 4.166 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.150 4.150 26 H 0.142 0.858 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.254 0.746 30 H 0.238 0.762 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.749 -6.454 16.761 21.462 hybrid contribution 1.104 -0.237 -0.727 1.343 sum -10.645 -6.692 16.034 20.376 Atomic orbital electron populations 1.21879 0.87496 1.05872 1.06677 1.21772 0.92675 0.82700 0.73591 1.90701 1.72263 1.33378 1.51945 1.45710 1.05359 1.09631 1.73868 1.20867 0.82384 1.01772 0.91720 0.87582 1.21754 0.82818 0.75460 0.92513 1.90605 1.61494 1.52345 1.43063 1.46246 1.06051 1.72246 1.10649 1.18283 0.92505 0.92522 0.79575 0.98516 1.21910 0.96645 0.98097 1.02556 1.21485 0.99645 1.40069 0.97063 0.90623 1.25845 1.02717 0.95362 0.94725 1.70061 1.39190 1.45577 1.00978 0.85355 0.78454 0.79020 0.77247 1.19248 1.21270 1.18905 1.22094 1.01757 0.90724 0.96325 1.22457 1.00460 0.95629 0.98063 1.22468 1.01165 0.96803 0.94966 1.22361 0.99285 0.94782 0.99004 1.22171 0.99838 0.99088 0.93855 0.85813 0.89421 0.87884 0.74633 0.76239 0.94316 0.91321 0.97966 0.92563 0.88771 0.92243 0.93346 0.91029 0.90582 0.90019 0.90646 0.90081 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 10.31 71.24 0.73 -1.98 16 2 C 0.50 14.61 7.89 87.66 0.69 15.30 16 3 O -0.60 -24.21 16.76 -3.00 -0.05 -24.26 16 4 N -0.69 -18.08 3.70 -446.11 -1.65 -19.73 16 5 C 0.14 4.25 1.95 44.25 0.09 4.33 16 6 H 0.11 3.27 7.55 -2.39 -0.02 3.25 16 7 C 0.49 20.65 6.55 87.66 0.57 21.23 16 8 O -0.59 -30.67 16.07 -3.04 -0.05 -30.72 16 9 N -0.70 -30.68 4.96 -446.10 -2.21 -32.89 16 10 C 0.27 14.87 2.56 44.25 0.11 14.99 16 11 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 12 C -0.13 -7.29 9.26 71.98 0.67 -6.63 16 13 C -0.54 -29.27 8.73 25.60 0.22 -29.05 16 14 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 15 C 0.01 0.73 5.30 84.65 0.45 1.18 16 16 N -0.92 -53.94 11.32 21.45 0.24 -53.69 16 17 Si 0.98 42.28 29.54 68.60 2.03 44.30 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 21 C -0.09 -1.98 2.71 -10.07 -0.03 -2.01 16 22 C -0.13 -2.94 5.49 31.67 0.17 -2.77 16 23 C -0.12 -1.81 6.91 31.89 0.22 -1.59 16 24 C -0.12 -1.41 6.83 31.67 0.22 -1.20 16 25 C -0.11 -1.70 6.18 31.32 0.19 -1.51 16 26 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.41 8.39 6.86 -92.71 -0.64 7.76 16 30 H 0.40 14.84 7.99 -92.71 -0.74 14.10 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.94 16 32 H 0.07 4.04 6.07 -2.39 -0.01 4.02 16 33 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.09 2.07 7.59 -2.39 -0.02 2.06 16 36 H 0.06 1.45 6.21 -2.39 -0.01 1.44 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 0.77 8.14 -2.38 -0.02 0.76 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.07 1.08 7.35 -2.39 -0.02 1.06 16 Total: -1.00 -78.03 347.14 2.26 -75.77 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -0.36 Total: 30.92 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 4.32 Total: 10.30 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -3.62 Total: -106.31 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -0.10 Total: -54.98 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -78.03 2.26 -75.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330639008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.744 kcal (2) G-P(sol) polarization free energy of solvation -78.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds