Wall clock time and date at job start Tue Mar 31 2020 05:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21273 * 119.99543 * 2 1 4 4 N 1.34779 * 119.99648 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99738 * 184.62520 * 4 2 1 6 6 H 1.08993 * 109.47281 * 183.78817 * 5 4 2 7 7 C 1.50696 * 109.47280 * 63.78679 * 5 4 2 8 8 O 1.21285 * 119.99862 * 333.54662 * 7 5 4 9 9 N 1.34778 * 120.00331 * 153.55088 * 7 5 4 10 10 C 1.46497 * 120.00160 * 175.17889 * 9 7 5 11 11 H 1.08997 * 109.47378 * 34.99597 * 10 9 7 12 12 C 1.53002 * 109.46956 * 274.99632 * 10 9 7 13 13 C 1.50695 * 109.47228 * 154.99837 * 10 9 7 14 14 H 1.08006 * 120.00226 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00352 * 179.97438 * 13 10 9 16 16 N 1.31518 * 119.99611 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 120.00416 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46949 * 59.99940 * 17 15 13 19 19 H 1.48497 * 109.47332 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47302 * 300.00504 * 17 15 13 21 21 C 1.53005 * 109.46968 * 303.78632 * 5 4 2 22 22 C 1.54266 * 110.03281 * 302.47096 * 21 5 4 23 23 C 1.54964 * 104.15776 * 217.13551 * 22 21 5 24 24 C 1.54888 * 102.77754 * 37.88777 * 23 22 21 25 25 C 1.53872 * 110.03123 * 185.25318 * 21 5 4 26 26 H 1.09003 * 109.47060 * 269.99857 * 1 2 3 27 27 H 1.08992 * 109.47035 * 30.00195 * 1 2 3 28 28 H 1.08999 * 109.46791 * 150.00180 * 1 2 3 29 29 H 0.97002 * 120.00123 * 4.62639 * 4 2 1 30 30 H 0.96996 * 119.99447 * 355.17325 * 9 7 5 31 31 H 1.08997 * 109.47049 * 300.00167 * 12 10 9 32 32 H 1.08998 * 109.47219 * 179.97438 * 12 10 9 33 33 H 1.09005 * 109.47232 * 60.00068 * 12 10 9 34 34 H 0.96996 * 119.99813 * 180.02562 * 16 15 13 35 35 H 1.09003 * 110.01699 * 63.85969 * 21 5 4 36 36 H 1.08999 * 110.48838 * 335.78434 * 22 21 5 37 37 H 1.09001 * 110.48461 * 98.42841 * 22 21 5 38 38 H 1.08997 * 110.72349 * 279.57417 * 23 22 21 39 39 H 1.09002 * 110.92042 * 156.29472 * 23 22 21 40 40 H 1.09001 * 110.48722 * 203.39834 * 24 23 22 41 41 H 1.09003 * 110.59560 * 80.81993 * 24 23 22 42 42 H 1.09006 * 110.03135 * 238.57147 * 25 21 5 43 43 H 1.09003 * 110.03532 * 359.94892 * 25 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6423 -1.1693 0.1028 6 1 4.0109 -2.1916 0.0197 7 6 4.0536 -0.5938 1.4335 8 8 3.3286 0.1939 2.0036 9 7 5.2270 -0.9542 1.9900 10 6 5.6760 -0.3166 3.2301 11 1 4.8138 -0.1023 3.8614 12 6 6.4022 0.9887 2.8984 13 6 6.6150 -1.2424 3.9595 14 1 6.8538 -2.2090 3.5410 15 6 7.1702 -0.8552 5.1607 16 7 6.8798 0.3221 5.6701 17 14 8.3335 -2.0030 6.0653 18 1 9.5080 -2.2960 5.2051 19 1 8.7888 -1.3567 7.3223 20 1 7.6281 -3.2694 6.3877 21 6 4.2337 -0.3206 -1.0246 22 6 3.7698 -0.8621 -2.3926 23 6 5.0046 -0.6795 -3.3110 24 6 6.1858 -1.0186 -2.3683 25 6 5.7691 -0.4197 -1.0091 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6982 -2.0060 -0.0669 30 1 5.7740 -1.6359 1.5694 31 1 7.2645 0.7744 2.2671 32 1 6.7360 1.4634 3.8211 33 1 5.7230 1.6584 2.3708 34 1 7.2707 0.5947 6.5150 35 1 3.9253 0.7186 -0.9104 36 1 3.5045 -1.9165 -2.3156 37 1 2.9262 -0.2819 -2.7665 38 1 5.0746 0.3497 -3.6631 39 1 4.9702 -1.3724 -4.1518 40 1 7.1045 -0.5528 -2.7249 41 1 6.3135 -2.0980 -2.2865 42 1 6.2060 0.5716 -0.8882 43 1 6.0931 -1.0716 -0.1978 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330639010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:39 Heat of formation + Delta-G solvation = -89.333364 kcal Electronic energy + Delta-G solvation = -23672.705241 eV Core-core repulsion = 20331.164246 eV Total energy + Delta-G solvation = -3341.540995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35204 -38.15456 -37.52187 -34.79518 -34.03223 -32.35406 -30.92820 -29.18426 -28.40922 -28.35700 -25.25440 -25.03597 -21.54850 -20.79048 -20.42903 -19.44454 -19.15190 -17.39695 -16.90283 -16.09381 -15.58107 -15.37639 -15.18410 -14.69883 -14.44395 -13.97090 -13.60012 -13.29572 -13.24968 -13.13715 -12.52566 -12.39096 -12.09894 -11.89208 -11.72948 -11.15009 -11.10849 -11.07695 -11.02228 -10.93421 -10.87810 -10.67252 -10.60764 -10.44615 -10.28035 -10.18753 -9.49726 -9.20415 -8.99287 -8.53866 -8.35588 -7.79403 -6.08299 -4.17768 2.97649 3.26787 3.29648 3.32296 3.33442 3.59530 4.18162 4.41903 4.68027 4.69273 4.81737 5.04574 5.17246 5.23503 5.30924 5.38138 5.47291 5.51162 5.55747 5.63358 5.73209 5.78501 5.84281 5.88782 5.94419 6.05844 6.16309 6.32519 6.43400 6.55851 6.69668 6.90108 7.05351 7.22551 7.54718 7.62531 7.73272 7.75352 7.97749 8.20730 8.59466 8.74172 8.84574 9.23423 9.50088 10.97517 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.005129 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.919326 B = 5457.760844 C = 6376.524877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.516 3.484 3 O -0.514 6.514 4 N -0.722 5.722 5 C 0.138 3.862 6 H 0.097 0.903 7 C 0.491 3.509 8 O -0.530 6.530 9 N -0.710 5.710 10 C 0.266 3.734 11 H 0.047 0.953 12 C -0.145 4.145 13 C -0.533 4.533 14 H 0.059 0.941 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.901 3.099 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.101 4.101 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.123 4.123 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.399 0.601 30 H 0.385 0.615 31 H 0.025 0.975 32 H 0.088 0.912 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.246 -6.193 -16.516 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.302 3.698 3 O -0.388 6.388 4 N -0.375 5.375 5 C 0.029 3.971 6 H 0.115 0.885 7 C 0.273 3.727 8 O -0.406 6.406 9 N -0.360 5.360 10 C 0.165 3.835 11 H 0.064 0.936 12 C -0.204 4.204 13 C -0.571 4.571 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.728 3.272 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.121 4.121 22 C -0.145 4.145 23 C -0.162 4.162 24 C -0.160 4.160 25 C -0.161 4.161 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.232 0.768 30 H 0.218 0.782 31 H 0.045 0.955 32 H 0.107 0.893 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.291 -4.679 -15.877 18.086 hybrid contribution 0.734 -1.412 0.457 1.656 sum -6.558 -6.091 -15.419 17.828 Atomic orbital electron populations 1.21852 0.92517 1.03961 1.04596 1.20534 0.90041 0.83688 0.75503 1.90685 1.70032 1.31206 1.46877 1.45665 1.06099 1.08901 1.76855 1.21090 0.81339 1.00340 0.94325 0.88516 1.20633 0.82509 0.82940 0.86585 1.90688 1.52436 1.34523 1.62924 1.46600 1.20287 1.41305 1.27783 1.18680 0.94665 0.90330 0.79853 0.93557 1.22059 0.98049 0.98567 1.01701 1.21178 1.27980 1.02084 1.05881 0.92253 1.24890 0.96502 0.95294 0.97027 1.69904 1.43585 1.19194 1.19382 0.86522 0.80942 0.80679 0.79007 1.20177 1.21159 1.20251 1.22136 0.94960 1.02373 0.92595 1.22305 0.97479 1.00414 0.94345 1.22501 0.95032 1.01233 0.97449 1.22354 0.97900 1.00546 0.95224 1.22261 0.94476 1.01937 0.97415 0.89032 0.89379 0.90829 0.76776 0.78198 0.95535 0.89327 0.96724 0.92571 0.87756 0.91894 0.92131 0.91698 0.91928 0.91846 0.91721 0.91382 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 10.31 36.01 0.37 -1.38 16 2 C 0.52 7.84 6.67 -10.98 -0.07 7.77 16 3 O -0.51 -10.42 13.12 -16.45 -0.22 -10.63 16 4 N -0.72 -9.33 4.75 -54.93 -0.26 -9.59 16 5 C 0.14 2.04 2.27 -69.08 -0.16 1.88 16 6 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 7 C 0.49 10.09 6.47 -10.99 -0.07 10.02 16 8 O -0.53 -13.42 13.74 -16.46 -0.23 -13.64 16 9 N -0.71 -14.95 4.44 -54.94 -0.24 -15.20 16 10 C 0.27 6.95 2.60 -69.09 -0.18 6.77 16 11 H 0.05 1.41 7.51 -51.93 -0.39 1.02 16 12 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 13 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 14 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 15 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 16 N -0.88 -25.36 11.32 55.43 0.63 -24.73 16 17 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 C -0.10 -1.44 2.10 -89.50 -0.19 -1.63 16 22 C -0.11 -1.19 5.93 -25.03 -0.15 -1.34 16 23 C -0.12 -1.26 6.91 -24.70 -0.17 -1.43 16 24 C -0.12 -1.31 6.83 -25.08 -0.17 -1.49 16 25 C -0.12 -1.67 6.05 -25.62 -0.16 -1.83 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.40 3.55 8.83 -40.82 -0.36 3.19 16 30 H 0.38 6.98 7.07 -40.82 -0.29 6.69 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.10 1.90 5.96 -51.93 -0.31 1.59 16 36 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.98 5.40 -51.93 -0.28 0.70 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -34.48 340.10 -8.18 -42.65 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.97 Total: 9.15 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.99 Total: 1.08 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.12 Total: -49.52 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.44 Total: -24.28 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.48 -8.18 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330639010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.679 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds