Wall clock time and date at job start Tue Mar 31 2020 05:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21273 * 119.99543 * 2 1 4 4 N 1.34779 * 119.99648 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99738 * 184.62520 * 4 2 1 6 6 H 1.08993 * 109.47281 * 183.78817 * 5 4 2 7 7 C 1.50696 * 109.47280 * 63.78679 * 5 4 2 8 8 O 1.21285 * 119.99862 * 333.54662 * 7 5 4 9 9 N 1.34778 * 120.00331 * 153.55088 * 7 5 4 10 10 C 1.46497 * 120.00160 * 175.17889 * 9 7 5 11 11 H 1.08997 * 109.47378 * 34.99597 * 10 9 7 12 12 C 1.53002 * 109.46956 * 274.99632 * 10 9 7 13 13 C 1.50695 * 109.47228 * 154.99837 * 10 9 7 14 14 H 1.08006 * 120.00226 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00352 * 179.97438 * 13 10 9 16 16 N 1.31518 * 119.99611 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 120.00416 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46949 * 59.99940 * 17 15 13 19 19 H 1.48497 * 109.47332 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47302 * 300.00504 * 17 15 13 21 21 C 1.53005 * 109.46968 * 303.78632 * 5 4 2 22 22 C 1.54266 * 110.03281 * 302.47096 * 21 5 4 23 23 C 1.54964 * 104.15776 * 217.13551 * 22 21 5 24 24 C 1.54888 * 102.77754 * 37.88777 * 23 22 21 25 25 C 1.53872 * 110.03123 * 185.25318 * 21 5 4 26 26 H 1.09003 * 109.47060 * 269.99857 * 1 2 3 27 27 H 1.08992 * 109.47035 * 30.00195 * 1 2 3 28 28 H 1.08999 * 109.46791 * 150.00180 * 1 2 3 29 29 H 0.97002 * 120.00123 * 4.62639 * 4 2 1 30 30 H 0.96996 * 119.99447 * 355.17325 * 9 7 5 31 31 H 1.08997 * 109.47049 * 300.00167 * 12 10 9 32 32 H 1.08998 * 109.47219 * 179.97438 * 12 10 9 33 33 H 1.09005 * 109.47232 * 60.00068 * 12 10 9 34 34 H 0.96996 * 119.99813 * 180.02562 * 16 15 13 35 35 H 1.09003 * 110.01699 * 63.85969 * 21 5 4 36 36 H 1.08999 * 110.48838 * 335.78434 * 22 21 5 37 37 H 1.09001 * 110.48461 * 98.42841 * 22 21 5 38 38 H 1.08997 * 110.72349 * 279.57417 * 23 22 21 39 39 H 1.09002 * 110.92042 * 156.29472 * 23 22 21 40 40 H 1.09001 * 110.48722 * 203.39834 * 24 23 22 41 41 H 1.09003 * 110.59560 * 80.81993 * 24 23 22 42 42 H 1.09006 * 110.03135 * 238.57147 * 25 21 5 43 43 H 1.09003 * 110.03532 * 359.94892 * 25 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6423 -1.1693 0.1028 6 1 4.0109 -2.1916 0.0197 7 6 4.0536 -0.5938 1.4335 8 8 3.3286 0.1939 2.0036 9 7 5.2270 -0.9542 1.9900 10 6 5.6760 -0.3166 3.2301 11 1 4.8138 -0.1023 3.8614 12 6 6.4022 0.9887 2.8984 13 6 6.6150 -1.2424 3.9595 14 1 6.8538 -2.2090 3.5410 15 6 7.1702 -0.8552 5.1607 16 7 6.8798 0.3221 5.6701 17 14 8.3335 -2.0030 6.0653 18 1 9.5080 -2.2960 5.2051 19 1 8.7888 -1.3567 7.3223 20 1 7.6281 -3.2694 6.3877 21 6 4.2337 -0.3206 -1.0246 22 6 3.7698 -0.8621 -2.3926 23 6 5.0046 -0.6795 -3.3110 24 6 6.1858 -1.0186 -2.3683 25 6 5.7691 -0.4197 -1.0091 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6982 -2.0060 -0.0669 30 1 5.7740 -1.6359 1.5694 31 1 7.2645 0.7744 2.2671 32 1 6.7360 1.4634 3.8211 33 1 5.7230 1.6584 2.3708 34 1 7.2707 0.5947 6.5150 35 1 3.9253 0.7186 -0.9104 36 1 3.5045 -1.9165 -2.3156 37 1 2.9262 -0.2819 -2.7665 38 1 5.0746 0.3497 -3.6631 39 1 4.9702 -1.3724 -4.1518 40 1 7.1045 -0.5528 -2.7249 41 1 6.3135 -2.0980 -2.2865 42 1 6.2060 0.5716 -0.8882 43 1 6.0931 -1.0716 -0.1978 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330639010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:38 Heat of formation + Delta-G solvation = -113.599896 kcal Electronic energy + Delta-G solvation = -23673.757517 eV Core-core repulsion = 20331.164246 eV Total energy + Delta-G solvation = -3342.593271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.68458 -39.66184 -38.67583 -36.70743 -35.33436 -34.31963 -32.14837 -30.79077 -29.60308 -29.32697 -27.36343 -26.33871 -23.24320 -22.06515 -21.36033 -21.12547 -20.49165 -18.85565 -18.37997 -17.43581 -17.14557 -16.97195 -16.41387 -16.24772 -15.68088 -15.44659 -15.08553 -14.74512 -14.47633 -14.39648 -14.16778 -13.73093 -13.47857 -13.14450 -13.03162 -12.93495 -12.90982 -12.74902 -12.29869 -12.19325 -12.15559 -12.07891 -11.88832 -11.87767 -11.65479 -11.42379 -11.12103 -10.95252 -10.60592 -10.44145 -9.82229 -9.69450 -8.17181 -6.35764 1.44481 1.47304 1.55132 1.72872 1.89699 2.30844 2.41474 2.75317 3.12801 3.65963 3.72562 3.77190 4.07559 4.10790 4.16585 4.36655 4.55425 4.56208 4.68494 4.69409 4.71421 4.77188 4.84759 4.87953 4.93287 5.05382 5.08284 5.09431 5.13742 5.28939 5.36633 5.40580 5.48344 5.49826 5.58552 5.61716 5.67678 5.90775 6.08557 6.72519 6.73093 6.99407 7.32587 7.50713 7.63176 8.89147 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.005129 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.919326 B = 5457.760844 C = 6376.524877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.502 3.498 3 O -0.574 6.574 4 N -0.708 5.708 5 C 0.147 3.853 6 H 0.141 0.859 7 C 0.483 3.517 8 O -0.583 6.583 9 N -0.702 5.702 10 C 0.275 3.725 11 H -0.009 1.009 12 C -0.129 4.129 13 C -0.544 4.544 14 H 0.077 0.923 15 C 0.012 3.988 16 N -0.921 5.921 17 Si 0.976 3.024 18 H -0.262 1.262 19 H -0.288 1.288 20 H -0.269 1.269 21 C -0.098 4.098 22 C -0.098 4.098 23 C -0.121 4.121 24 C -0.115 4.115 25 C -0.126 4.126 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.117 0.883 29 H 0.422 0.578 30 H 0.403 0.597 31 H 0.041 0.959 32 H 0.065 0.935 33 H -0.001 1.001 34 H 0.265 0.735 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.039 0.961 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 -9.792 -18.512 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.291 3.709 3 O -0.452 6.452 4 N -0.362 5.362 5 C 0.038 3.962 6 H 0.159 0.841 7 C 0.269 3.731 8 O -0.463 6.463 9 N -0.354 5.354 10 C 0.171 3.829 11 H 0.009 0.991 12 C -0.188 4.188 13 C -0.582 4.582 14 H 0.095 0.905 15 C -0.188 4.188 16 N -0.559 5.559 17 Si 0.800 3.200 18 H -0.186 1.186 19 H -0.214 1.214 20 H -0.194 1.194 21 C -0.118 4.118 22 C -0.135 4.135 23 C -0.158 4.158 24 C -0.153 4.153 25 C -0.164 4.164 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.136 0.864 29 H 0.260 0.740 30 H 0.239 0.761 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.058 0.942 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.044 -8.356 -17.924 20.993 hybrid contribution 0.605 -0.220 1.100 1.274 sum -6.438 -8.576 -16.824 19.951 Atomic orbital electron populations 1.21855 0.88651 1.06328 1.05171 1.21496 0.92059 0.83262 0.74061 1.90679 1.71623 1.33450 1.49481 1.45590 1.05413 1.09645 1.75601 1.21087 0.82698 1.02061 0.90355 0.84100 1.21774 0.81375 0.81904 0.88081 1.90665 1.53956 1.36841 1.64814 1.46335 1.21067 1.41524 1.26437 1.18236 0.92530 0.90863 0.81294 0.99110 1.21865 0.98112 0.98338 1.00445 1.21506 1.27793 1.02684 1.06258 0.90524 1.25873 0.98191 0.96802 0.97945 1.70076 1.44804 1.21274 1.19779 0.85343 0.78836 0.78368 0.77455 1.18649 1.21392 1.19355 1.22033 0.95401 0.99879 0.94444 1.22261 0.97671 1.01639 0.91945 1.22501 0.93971 1.01465 0.97873 1.22341 0.98233 1.01628 0.93053 1.22268 0.93988 1.00621 0.99538 0.89115 0.89184 0.86401 0.73988 0.76093 0.93985 0.91669 0.98206 0.92628 0.92455 0.89059 0.92758 0.92749 0.89180 0.91481 0.89477 0.94229 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 10.31 71.24 0.73 -2.33 16 2 C 0.50 15.17 6.67 87.66 0.58 15.76 16 3 O -0.57 -24.47 13.12 18.04 0.24 -24.23 16 4 N -0.71 -17.03 4.75 -446.10 -2.12 -19.15 16 5 C 0.15 4.15 2.27 44.25 0.10 4.25 16 6 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 7 C 0.48 20.31 6.47 87.66 0.57 20.87 16 8 O -0.58 -31.19 13.74 18.00 0.25 -30.94 16 9 N -0.70 -29.97 4.44 -446.11 -1.98 -31.95 16 10 C 0.27 14.85 2.60 44.24 0.12 14.97 16 11 H -0.01 -0.58 7.51 -2.39 -0.02 -0.60 16 12 C -0.13 -6.98 9.26 71.98 0.67 -6.32 16 13 C -0.54 -29.22 8.73 25.60 0.22 -28.99 16 14 H 0.08 3.76 7.74 -2.91 -0.02 3.74 16 15 C 0.01 0.63 5.30 84.65 0.45 1.08 16 16 N -0.92 -54.42 11.32 21.45 0.24 -54.18 16 17 Si 0.98 42.27 29.54 68.60 2.03 44.30 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 21 C -0.10 -2.74 2.10 -10.07 -0.02 -2.76 16 22 C -0.10 -1.89 5.93 31.69 0.19 -1.71 16 23 C -0.12 -2.07 6.91 31.91 0.22 -1.85 16 24 C -0.12 -2.14 6.83 31.67 0.22 -1.92 16 25 C -0.13 -3.34 6.05 31.32 0.19 -3.16 16 26 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.42 6.02 8.83 -92.71 -0.82 5.20 16 30 H 0.40 14.14 7.07 -92.71 -0.66 13.49 16 31 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 3.84 6.07 -2.39 -0.01 3.82 16 33 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 34 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 35 H 0.06 2.21 5.96 -2.39 -0.01 2.19 16 36 H 0.09 1.29 7.85 -2.39 -0.02 1.27 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.07 1.79 5.40 -2.39 -0.01 1.78 16 Total: -1.00 -81.82 340.10 2.43 -79.39 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.46 Total: 28.85 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 4.23 Total: 7.90 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -3.86 Total: -105.27 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: 0.48 Total: -55.17 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -81.82 2.43 -79.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330639010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.206 kcal (2) G-P(sol) polarization free energy of solvation -81.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds