Wall clock time and date at job start Tue Mar 31 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46878 * 2 1 4 4 N 1.46499 * 109.47080 * 239.99265 * 2 1 3 5 5 C 1.34775 * 119.99299 * 85.00358 * 4 2 1 6 6 O 1.21276 * 120.00699 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99599 * 179.97438 * 5 4 2 8 8 C 1.55238 * 110.58096 * 294.87565 * 7 5 4 9 9 C 1.54894 * 102.58338 * 203.33573 * 8 7 5 10 10 C 1.54266 * 104.31305 * 37.93170 * 9 8 7 11 11 C 1.53869 * 106.60031 * 336.32486 * 10 9 8 12 12 C 1.50705 * 109.46744 * 119.99575 * 2 1 3 13 13 O 1.21283 * 119.99988 * 120.00720 * 12 2 1 14 14 N 1.34773 * 120.00202 * 299.99745 * 12 2 1 15 15 C 1.46506 * 119.99813 * 0.02562 * 14 12 2 16 16 C 1.46494 * 120.00120 * 180.02562 * 14 12 2 17 17 C 1.50700 * 109.47303 * 90.00025 * 16 14 12 18 18 H 1.07993 * 120.00012 * 0.02562 * 17 16 14 19 19 C 1.37877 * 120.00090 * 180.02562 * 17 16 14 20 20 N 1.31521 * 119.99899 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99994 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47269 * 59.99657 * 21 19 17 23 23 H 1.48500 * 109.46897 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46903 * 299.99673 * 21 19 17 25 25 H 1.09000 * 109.47261 * 300.00416 * 1 2 3 26 26 H 1.08993 * 109.47204 * 60.00734 * 1 2 3 27 27 H 1.09006 * 109.47290 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00025 * 264.99975 * 4 2 1 29 29 H 1.09006 * 110.43428 * 57.45967 * 7 5 4 30 30 H 1.08996 * 110.89448 * 85.05138 * 8 7 5 31 31 H 1.08993 * 110.76342 * 321.56803 * 8 7 5 32 32 H 1.09002 * 110.48891 * 279.18596 * 9 8 7 33 33 H 1.08998 * 110.48494 * 156.67683 * 9 8 7 34 34 H 1.09001 * 110.03084 * 95.60669 * 10 9 8 35 35 H 1.08996 * 110.03108 * 216.98559 * 10 9 8 36 36 H 1.08999 * 110.04012 * 119.28327 * 11 10 9 37 37 H 1.09006 * 110.02998 * 240.67078 * 11 10 9 38 38 H 1.08999 * 109.47232 * 89.99894 * 15 14 12 39 39 H 1.08999 * 109.46700 * 210.00097 * 15 14 12 40 40 H 1.08994 * 109.47121 * 329.99350 * 15 14 12 41 41 H 1.09005 * 109.47230 * 210.00259 * 16 14 12 42 42 H 1.09001 * 109.46963 * 329.99858 * 16 14 12 43 43 H 0.96998 * 119.99388 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3570 6 8 1.8582 1.1582 -2.4117 7 6 2.6499 -0.7288 -3.5874 8 6 4.1205 -1.1856 -3.3910 9 6 4.6330 -1.3088 -4.8475 10 6 3.9719 -0.1265 -5.5856 11 6 2.7111 0.2423 -4.7844 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6964 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 0.8640 0.9411 2.5889 16 6 2.1954 -0.9400 3.6508 17 6 3.5228 -0.3560 4.0607 18 1 3.9585 0.4490 3.4878 19 6 4.1809 -0.8495 5.1673 20 7 3.6499 -1.8296 5.8653 21 14 5.8259 -0.1251 5.6758 22 1 5.6598 1.3205 5.9722 23 1 6.3213 -0.8249 6.8883 24 1 6.8040 -0.2947 4.5714 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.2490 -1.6319 -1.1524 29 1 2.0135 -1.5825 -3.8208 30 1 4.1637 -2.1493 -2.8835 31 1 4.6889 -0.4337 -2.8437 32 1 4.3169 -2.2561 -5.2843 33 1 5.7188 -1.2189 -4.8787 34 1 4.6551 0.7223 -5.6183 35 1 3.6983 -0.4243 -6.5978 36 1 2.7822 1.2700 -4.4282 37 1 1.8247 0.1239 -5.4078 38 1 -0.1838 0.6429 2.6224 39 1 1.1218 1.4667 3.5083 40 1 1.0273 1.5997 1.7360 41 1 1.4774 -0.8148 4.4614 42 1 2.3168 -2.0013 3.4338 43 1 4.1128 -2.1765 6.6439 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330653027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:37 Heat of formation + Delta-G solvation = -85.792938 kcal Electronic energy + Delta-G solvation = -22740.233172 eV Core-core repulsion = 19398.845702 eV Total energy + Delta-G solvation = -3341.387471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34773 -39.09128 -37.18445 -35.09004 -34.74786 -32.72088 -31.05502 -29.03175 -28.75162 -27.57504 -26.20527 -24.31097 -22.86143 -21.44302 -20.57443 -19.81370 -18.78161 -17.56946 -16.60748 -16.29294 -16.01537 -15.58173 -15.27451 -14.93542 -14.60251 -14.32778 -13.88320 -13.64350 -13.50825 -13.17730 -12.83098 -12.38529 -12.18564 -12.04669 -11.97535 -11.57623 -11.44119 -11.39398 -11.28876 -11.24373 -11.13861 -10.93601 -10.91976 -10.60405 -10.58407 -10.20078 -9.72570 -9.68469 -9.20992 -8.85864 -8.46948 -7.75062 -6.08331 -4.13399 2.67063 3.12008 3.25173 3.30391 3.34432 3.38896 3.93150 4.33299 4.41643 4.42280 4.61250 4.87529 5.05631 5.17837 5.22334 5.26186 5.29992 5.31307 5.34262 5.41315 5.48886 5.55012 5.70998 5.72061 5.76562 5.81830 5.89613 5.94650 6.01876 6.09057 6.14031 6.20407 6.27621 6.48580 6.96758 7.35998 7.43650 7.61928 7.87374 8.17812 8.22726 8.34048 8.80241 8.95815 9.51811 10.99754 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019963 B = 0.003981 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.230514 B = 7030.920146 C = 7870.802618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 H 0.108 0.892 4 N -0.707 5.707 5 C 0.522 3.478 6 O -0.546 6.546 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.125 4.125 11 C -0.111 4.111 12 C 0.502 3.498 13 O -0.539 6.539 14 N -0.594 5.594 15 C 0.077 3.923 16 C 0.246 3.754 17 C -0.529 4.529 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.409 0.591 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.034 0.966 42 H 0.045 0.955 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.916 2.561 -18.336 19.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 H 0.125 0.875 4 N -0.359 5.359 5 C 0.309 3.691 6 O -0.424 6.424 7 C -0.134 4.134 8 C -0.153 4.153 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.149 4.149 12 C 0.287 3.713 13 O -0.417 6.417 14 N -0.326 5.326 15 C -0.067 4.067 16 C 0.127 3.873 17 C -0.568 4.568 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.246 0.754 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.730 2.759 -18.214 19.019 hybrid contribution 0.985 -0.036 0.526 1.117 sum -3.745 2.724 -17.688 18.284 Atomic orbital electron populations 1.22345 0.93452 1.03052 1.03774 1.20804 0.95358 0.98032 0.84459 0.87475 1.45788 1.66709 1.14913 1.08528 1.20532 0.76977 0.87172 0.84438 1.90656 1.50579 1.16078 1.85103 1.22217 0.98423 0.99482 0.93306 1.22568 0.93260 1.02035 0.97464 1.22351 1.00295 0.98534 0.94904 1.22149 0.96927 0.98319 0.98834 1.22064 0.97848 1.00384 0.94629 1.20250 0.81193 0.85233 0.84592 1.90656 1.38112 1.26909 1.86058 1.48080 1.49262 1.28157 1.07074 1.21878 0.93862 0.88056 1.02905 1.19330 0.94317 0.93693 0.79977 1.21388 1.04867 1.19179 1.11381 0.92489 1.24930 0.97981 0.94914 0.96188 1.69922 1.39079 1.25999 1.18341 0.86545 0.83797 0.79099 0.77921 1.20194 1.21120 1.20176 0.89857 0.91488 0.92070 0.75378 0.88233 0.90451 0.90774 0.91416 0.91387 0.91728 0.91831 0.89756 0.91615 0.93035 0.90520 0.92035 0.94757 0.93742 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.12 37.16 0.34 -1.84 16 2 C 0.12 1.94 2.18 -69.08 -0.15 1.79 16 3 H 0.11 1.76 6.84 -51.93 -0.36 1.40 16 4 N -0.71 -10.33 4.94 -54.93 -0.27 -10.60 16 5 C 0.52 7.36 7.10 -10.98 -0.08 7.29 16 6 O -0.55 -9.24 15.09 5.56 0.08 -9.16 16 7 C -0.11 -1.21 3.25 -89.92 -0.29 -1.50 16 8 C -0.12 -1.18 6.34 -24.55 -0.16 -1.33 16 9 C -0.12 -1.03 6.82 -25.07 -0.17 -1.20 16 10 C -0.12 -1.05 6.80 -25.62 -0.17 -1.22 16 11 C -0.11 -1.13 6.18 -25.62 -0.16 -1.29 16 12 C 0.50 10.17 7.14 -10.98 -0.08 10.09 16 13 O -0.54 -12.87 15.42 5.56 0.09 -12.78 16 14 N -0.59 -12.30 2.86 -182.95 -0.52 -12.83 16 15 C 0.08 1.19 8.80 59.85 0.53 1.72 16 16 C 0.25 6.31 5.16 -5.20 -0.03 6.29 16 17 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 18 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 21 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H 0.08 0.98 4.53 -51.93 -0.24 0.75 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.41 5.79 7.79 -40.82 -0.32 5.47 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 1.03 6.85 -51.93 -0.36 0.67 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 39 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 40 H 0.06 0.82 6.01 -51.93 -0.31 0.51 16 41 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 42 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -33.12 346.18 -7.46 -40.58 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.93 Total: 3.19 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -0.84 Total: 5.21 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.06 Total: -49.03 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.17 Total: -21.94 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.12 -7.46 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330653027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.212 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds