Wall clock time and date at job start Tue Mar 31 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47278 * 2 1 4 4 N 1.46497 * 109.47015 * 119.99811 * 2 1 3 5 5 C 1.34783 * 120.00348 * 274.99613 * 4 2 1 6 6 O 1.21280 * 119.99634 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00064 * 180.02562 * 5 4 2 8 8 C 1.55243 * 110.46964 * 294.81263 * 7 5 4 9 9 C 1.54885 * 102.58910 * 203.39585 * 8 7 5 10 10 C 1.54271 * 104.31015 * 37.93290 * 9 8 7 11 11 C 1.53869 * 106.60004 * 336.32309 * 10 9 8 12 12 C 1.50697 * 109.47322 * 240.00228 * 2 1 3 13 13 O 1.21283 * 119.99914 * 254.24807 * 12 2 1 14 14 N 1.34771 * 120.00449 * 74.24828 * 12 2 1 15 15 C 1.46505 * 119.99644 * 3.63740 * 14 12 2 16 16 C 1.46494 * 120.00193 * 183.63371 * 14 12 2 17 17 C 1.50702 * 109.47045 * 90.00415 * 16 14 12 18 18 H 1.07995 * 120.00112 * 359.97438 * 17 16 14 19 19 C 1.37878 * 119.99970 * 180.02562 * 17 16 14 20 20 N 1.31517 * 119.99931 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00068 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46793 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47338 * 119.99573 * 21 19 17 24 24 H 1.48506 * 109.47225 * 240.00017 * 21 19 17 25 25 H 1.09006 * 109.46884 * 176.04246 * 1 2 3 26 26 H 1.08997 * 109.47581 * 296.03971 * 1 2 3 27 27 H 1.08997 * 109.47403 * 56.04770 * 1 2 3 28 28 H 0.97002 * 120.00264 * 95.00790 * 4 2 1 29 29 H 1.08991 * 110.43598 * 57.46634 * 7 5 4 30 30 H 1.09004 * 110.89583 * 85.10350 * 8 7 5 31 31 H 1.08999 * 110.76715 * 321.62923 * 8 7 5 32 32 H 1.08996 * 110.48659 * 279.19173 * 9 8 7 33 33 H 1.08997 * 110.48703 * 156.67367 * 9 8 7 34 34 H 1.08997 * 110.03327 * 95.61153 * 10 9 8 35 35 H 1.09005 * 110.03126 * 216.99104 * 10 9 8 36 36 H 1.09003 * 110.03270 * 119.29059 * 11 10 9 37 37 H 1.09001 * 110.03452 * 240.66553 * 11 10 9 38 38 H 1.09000 * 109.47658 * 84.66140 * 15 14 12 39 39 H 1.09001 * 109.46876 * 204.66073 * 15 14 12 40 40 H 1.09004 * 109.46951 * 324.65839 * 15 14 12 41 41 H 1.09009 * 109.47092 * 209.99793 * 16 14 12 42 42 H 1.08997 * 109.47505 * 329.99930 * 16 14 12 43 43 H 0.97004 * 119.99657 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1585 2.4117 7 6 2.6499 -0.7285 3.5875 8 6 1.6416 -1.8213 4.0337 9 6 1.9714 -1.9911 5.5375 10 6 2.2796 -0.5600 6.0243 11 6 2.7109 0.2427 4.7845 12 6 2.0323 -0.7103 -1.2304 13 8 2.5033 -1.8241 -1.1378 14 7 1.9583 -0.1080 -2.4338 15 6 1.4635 1.2672 -2.5353 16 6 2.3726 -0.8283 -3.6402 17 6 1.1905 -1.5638 -4.2171 18 1 0.2271 -1.5013 -3.7331 19 6 1.3392 -2.3174 -5.3620 20 7 2.5126 -2.3940 -5.9511 21 14 -0.1259 -3.2297 -6.0766 22 1 -1.3223 -2.9830 -5.2323 23 1 -0.3851 -2.7462 -7.4565 24 1 0.1651 -4.6856 -6.1087 25 1 -0.3633 -1.0253 -0.0709 26 1 -0.3634 0.4511 0.9233 27 1 -0.3634 0.5739 -0.8524 28 1 2.2490 -1.6317 1.1527 29 1 3.6307 -1.1655 3.4005 30 1 1.8127 -2.7522 3.4931 31 1 0.6156 -1.4784 3.8996 32 1 2.8422 -2.6338 5.6668 33 1 1.1140 -2.3996 6.0723 34 1 1.3874 -0.1154 6.4652 35 1 3.0870 -0.5804 6.7563 36 1 2.0281 1.0770 4.6237 37 1 3.7279 0.6128 4.9145 38 1 2.2817 1.9626 -2.3483 39 1 1.0640 1.4367 -3.5352 40 1 0.6764 1.4255 -1.7980 41 1 2.7525 -0.1183 -4.3750 42 1 3.1561 -1.5423 -3.3861 43 1 2.6171 -2.9239 -6.7568 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330653028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:39 Heat of formation + Delta-G solvation = -88.969975 kcal Electronic energy + Delta-G solvation = -22679.287265 eV Core-core repulsion = 19337.762028 eV Total energy + Delta-G solvation = -3341.525237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.35870 -39.08011 -37.21779 -35.09906 -34.68752 -32.69690 -31.07767 -29.03036 -28.79779 -27.71817 -26.07782 -24.33118 -22.87622 -21.51183 -20.58255 -19.80539 -18.74271 -17.59754 -16.59165 -16.40142 -16.06383 -15.50908 -15.14676 -14.97678 -14.61993 -14.52596 -13.93362 -13.57766 -13.36391 -13.30617 -12.80594 -12.41233 -12.17760 -12.06109 -11.93387 -11.59284 -11.49636 -11.39821 -11.32754 -11.30431 -11.22914 -10.97469 -10.90104 -10.63254 -10.61669 -10.21247 -9.74049 -9.66601 -9.23831 -8.86090 -8.48710 -7.74181 -6.09373 -4.14618 2.64915 3.09425 3.24096 3.26520 3.34483 3.38887 3.94798 4.29196 4.37836 4.40046 4.56831 4.88010 5.03635 5.16589 5.23808 5.25454 5.26266 5.29646 5.31634 5.37724 5.44381 5.53784 5.64246 5.71651 5.77214 5.85446 5.89330 5.92368 5.96363 6.08908 6.13179 6.17631 6.32849 6.48597 6.97037 7.37003 7.44079 7.61058 7.86517 8.16821 8.21910 8.33121 8.79424 8.95300 9.50687 10.98756 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029251 B = 0.003500 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.994535 B = 7998.699363 C = 8347.121738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 H 0.104 0.896 4 N -0.708 5.708 5 C 0.522 3.478 6 O -0.547 6.547 7 C -0.114 4.114 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.124 4.124 11 C -0.112 4.112 12 C 0.504 3.496 13 O -0.542 6.542 14 N -0.594 5.594 15 C 0.072 3.928 16 C 0.244 3.756 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.410 0.590 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.045 0.955 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 4.776 19.348 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.014 3.986 3 H 0.122 0.878 4 N -0.361 5.361 5 C 0.309 3.691 6 O -0.424 6.424 7 C -0.135 4.135 8 C -0.153 4.153 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.150 4.150 12 C 0.289 3.711 13 O -0.420 6.420 14 N -0.325 5.325 15 C -0.072 4.072 16 C 0.125 3.875 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.727 3.273 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.248 0.752 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.511 4.957 19.221 19.907 hybrid contribution -0.635 -0.925 -0.711 1.329 sum -2.146 4.032 18.510 19.065 Atomic orbital electron populations 1.22134 0.93138 1.03299 1.03011 1.20831 0.95647 0.97771 0.84381 0.87779 1.45841 1.66727 1.15005 1.08561 1.20536 0.77199 0.87102 0.84312 1.90656 1.50706 1.16084 1.84983 1.22227 1.00855 0.97366 0.93088 1.22559 0.98757 0.97670 0.96264 1.22350 1.01475 0.96984 0.95294 1.22150 1.01179 0.95317 0.97568 1.22066 1.02562 0.98236 0.92099 1.20228 0.79767 0.86554 0.84554 1.90645 1.46138 1.19525 1.85677 1.48083 1.62518 1.14003 1.07928 1.21884 0.98588 0.83153 1.03554 1.19360 0.96433 0.92080 0.79645 1.21457 0.95885 1.29726 1.09596 0.92322 1.24946 0.96113 0.96341 0.96723 1.69946 1.22627 1.40755 1.19928 0.86429 0.82510 0.79653 0.78747 1.19779 1.20921 1.20858 0.91695 0.91442 0.90455 0.75245 0.88071 0.90555 0.90890 0.91347 0.91436 0.91754 0.91793 0.89747 0.91549 0.93460 0.90242 0.91802 0.94775 0.93683 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.22 37.15 0.34 -1.90 16 2 C 0.12 1.95 2.15 -69.09 -0.15 1.80 16 3 H 0.10 1.63 6.90 -51.93 -0.36 1.27 16 4 N -0.71 -10.28 5.01 -54.94 -0.28 -10.55 16 5 C 0.52 7.19 7.10 -10.98 -0.08 7.11 16 6 O -0.55 -9.03 15.08 5.56 0.08 -8.95 16 7 C -0.11 -1.18 3.26 -89.92 -0.29 -1.48 16 8 C -0.11 -1.02 6.34 -24.55 -0.16 -1.17 16 9 C -0.12 -0.92 6.82 -25.07 -0.17 -1.09 16 10 C -0.12 -0.97 6.80 -25.61 -0.17 -1.15 16 11 C -0.11 -1.09 6.18 -25.62 -0.16 -1.25 16 12 C 0.50 10.24 6.97 -10.99 -0.08 10.17 16 13 O -0.54 -12.90 15.42 5.56 0.09 -12.81 16 14 N -0.59 -12.41 2.86 -182.95 -0.52 -12.93 16 15 C 0.07 1.14 9.85 59.85 0.59 1.73 16 16 C 0.24 6.28 5.16 -5.20 -0.03 6.26 16 17 C -0.53 -14.68 9.39 -34.44 -0.32 -15.00 16 18 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 21 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.04 5.83 -51.93 -0.30 0.73 16 28 H 0.41 5.84 7.72 -40.82 -0.31 5.52 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.98 6.85 -51.93 -0.36 0.63 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 40 H 0.06 0.86 4.58 -51.93 -0.24 0.62 16 41 H 0.03 0.89 8.07 -51.92 -0.42 0.47 16 42 H 0.05 1.31 7.37 -51.93 -0.38 0.93 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -32.80 348.17 -7.42 -40.21 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.98 Total: 3.15 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -0.77 Total: 5.65 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.06 Total: -49.00 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.17 Total: -21.76 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.80 -7.42 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330653028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.756 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds