Wall clock time and date at job start Tue Mar 31 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47278 * 2 1 4 4 N 1.46497 * 109.47015 * 119.99811 * 2 1 3 5 5 C 1.34783 * 120.00348 * 274.99613 * 4 2 1 6 6 O 1.21280 * 119.99634 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00064 * 180.02562 * 5 4 2 8 8 C 1.55243 * 110.46964 * 294.81263 * 7 5 4 9 9 C 1.54885 * 102.58910 * 203.39585 * 8 7 5 10 10 C 1.54271 * 104.31015 * 37.93290 * 9 8 7 11 11 C 1.53869 * 106.60004 * 336.32309 * 10 9 8 12 12 C 1.50697 * 109.47322 * 240.00228 * 2 1 3 13 13 O 1.21283 * 119.99914 * 254.24807 * 12 2 1 14 14 N 1.34771 * 120.00449 * 74.24828 * 12 2 1 15 15 C 1.46505 * 119.99644 * 3.63740 * 14 12 2 16 16 C 1.46494 * 120.00193 * 183.63371 * 14 12 2 17 17 C 1.50702 * 109.47045 * 90.00415 * 16 14 12 18 18 H 1.07995 * 120.00112 * 359.97438 * 17 16 14 19 19 C 1.37878 * 119.99970 * 180.02562 * 17 16 14 20 20 N 1.31517 * 119.99931 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00068 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46793 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47338 * 119.99573 * 21 19 17 24 24 H 1.48506 * 109.47225 * 240.00017 * 21 19 17 25 25 H 1.09006 * 109.46884 * 176.04246 * 1 2 3 26 26 H 1.08997 * 109.47581 * 296.03971 * 1 2 3 27 27 H 1.08997 * 109.47403 * 56.04770 * 1 2 3 28 28 H 0.97002 * 120.00264 * 95.00790 * 4 2 1 29 29 H 1.08991 * 110.43598 * 57.46634 * 7 5 4 30 30 H 1.09004 * 110.89583 * 85.10350 * 8 7 5 31 31 H 1.08999 * 110.76715 * 321.62923 * 8 7 5 32 32 H 1.08996 * 110.48659 * 279.19173 * 9 8 7 33 33 H 1.08997 * 110.48703 * 156.67367 * 9 8 7 34 34 H 1.08997 * 110.03327 * 95.61153 * 10 9 8 35 35 H 1.09005 * 110.03126 * 216.99104 * 10 9 8 36 36 H 1.09003 * 110.03270 * 119.29059 * 11 10 9 37 37 H 1.09001 * 110.03452 * 240.66553 * 11 10 9 38 38 H 1.09000 * 109.47658 * 84.66140 * 15 14 12 39 39 H 1.09001 * 109.46876 * 204.66073 * 15 14 12 40 40 H 1.09004 * 109.46951 * 324.65839 * 15 14 12 41 41 H 1.09009 * 109.47092 * 209.99793 * 16 14 12 42 42 H 1.08997 * 109.47505 * 329.99930 * 16 14 12 43 43 H 0.97004 * 119.99657 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1585 2.4117 7 6 2.6499 -0.7285 3.5875 8 6 1.6416 -1.8213 4.0337 9 6 1.9714 -1.9911 5.5375 10 6 2.2796 -0.5600 6.0243 11 6 2.7109 0.2427 4.7845 12 6 2.0323 -0.7103 -1.2304 13 8 2.5033 -1.8241 -1.1378 14 7 1.9583 -0.1080 -2.4338 15 6 1.4635 1.2672 -2.5353 16 6 2.3726 -0.8283 -3.6402 17 6 1.1905 -1.5638 -4.2171 18 1 0.2271 -1.5013 -3.7331 19 6 1.3392 -2.3174 -5.3620 20 7 2.5126 -2.3940 -5.9511 21 14 -0.1259 -3.2297 -6.0766 22 1 -1.3223 -2.9830 -5.2323 23 1 -0.3851 -2.7462 -7.4565 24 1 0.1651 -4.6856 -6.1087 25 1 -0.3633 -1.0253 -0.0709 26 1 -0.3634 0.4511 0.9233 27 1 -0.3634 0.5739 -0.8524 28 1 2.2490 -1.6317 1.1527 29 1 3.6307 -1.1655 3.4005 30 1 1.8127 -2.7522 3.4931 31 1 0.6156 -1.4784 3.8996 32 1 2.8422 -2.6338 5.6668 33 1 1.1140 -2.3996 6.0723 34 1 1.3874 -0.1154 6.4652 35 1 3.0870 -0.5804 6.7563 36 1 2.0281 1.0770 4.6237 37 1 3.7279 0.6128 4.9145 38 1 2.2817 1.9626 -2.3483 39 1 1.0640 1.4367 -3.5352 40 1 0.6764 1.4255 -1.7980 41 1 2.7525 -0.1183 -4.3750 42 1 3.1561 -1.5423 -3.3861 43 1 2.6171 -2.9239 -6.7568 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330653028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:39 Heat of formation + Delta-G solvation = -110.578187 kcal Electronic energy + Delta-G solvation = -22680.224268 eV Core-core repulsion = 19337.762028 eV Total energy + Delta-G solvation = -3342.462240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59853 -40.48312 -38.09597 -36.77545 -36.06021 -34.73764 -32.31084 -30.02557 -29.57655 -29.39034 -27.57383 -25.92999 -24.42373 -22.65324 -21.30335 -20.88962 -20.14132 -18.75846 -18.69076 -17.79701 -17.32185 -16.77760 -16.47271 -16.33736 -16.09688 -15.78816 -15.31290 -14.74482 -14.34139 -14.25458 -14.23620 -14.17249 -13.60428 -13.47392 -13.32246 -13.04056 -12.87157 -12.77511 -12.64978 -12.44941 -12.22065 -12.17448 -12.05049 -11.96909 -11.68804 -11.68336 -11.27089 -10.86757 -10.72865 -10.65549 -10.21494 -9.50149 -8.23500 -6.38300 1.37764 1.39510 1.51155 1.53153 1.65595 1.87788 2.36337 2.49974 3.06773 3.42846 3.53609 3.63815 3.81669 3.99735 4.04951 4.22985 4.30158 4.48366 4.53840 4.58108 4.60413 4.62316 4.66955 4.71397 4.81552 4.88103 4.95713 4.97403 5.12069 5.15335 5.20223 5.21951 5.27867 5.30600 5.42529 5.50434 5.52235 5.78209 6.03227 6.46632 6.60053 6.71789 7.14348 7.19658 7.35838 8.84101 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029251 B = 0.003500 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.994535 B = 7998.699363 C = 8347.121738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.135 3.865 3 H 0.113 0.887 4 N -0.710 5.710 5 C 0.522 3.478 6 O -0.574 6.574 7 C -0.112 4.112 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.121 4.121 11 C -0.112 4.112 12 C 0.498 3.502 13 O -0.585 6.585 14 N -0.601 5.601 15 C 0.067 3.933 16 C 0.258 3.742 17 C -0.542 4.542 18 H 0.057 0.943 19 C 0.008 3.992 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.265 1.265 23 H -0.271 1.271 24 H -0.282 1.282 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.412 0.588 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.025 0.975 42 H 0.002 0.998 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 4.907 20.661 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.026 3.974 3 H 0.130 0.870 4 N -0.362 5.362 5 C 0.311 3.689 6 O -0.454 6.454 7 C -0.133 4.133 8 C -0.152 4.152 9 C -0.156 4.156 10 C -0.159 4.159 11 C -0.150 4.150 12 C 0.285 3.715 13 O -0.466 6.466 14 N -0.331 5.331 15 C -0.075 4.075 16 C 0.137 3.863 17 C -0.580 4.580 18 H 0.075 0.925 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.793 3.207 22 H -0.189 1.189 23 H -0.196 1.196 24 H -0.208 1.208 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.249 0.751 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.043 0.957 42 H 0.020 0.980 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.816 5.125 20.556 21.371 hybrid contribution -0.177 -0.921 -1.109 1.453 sum -2.993 4.204 19.446 20.119 Atomic orbital electron populations 1.22099 0.91484 1.03140 1.04124 1.20709 0.96667 0.97341 0.82693 0.86969 1.45911 1.66861 1.15069 1.08406 1.21126 0.76289 0.86798 0.84704 1.90641 1.51972 1.17363 1.85412 1.22319 1.01739 0.97756 0.91530 1.22578 0.97786 0.97236 0.97561 1.22353 1.02385 0.96927 0.93980 1.22141 1.01747 0.95147 0.96827 1.22067 1.02386 0.97734 0.92791 1.20997 0.78783 0.86201 0.85490 1.90615 1.47895 1.21593 1.86451 1.48074 1.62586 1.15671 1.06799 1.22158 1.00242 0.80620 1.04483 1.18845 0.94896 0.91330 0.81247 1.21719 0.96197 1.30204 1.09907 0.92455 1.25865 0.99020 0.97124 0.97131 1.70063 1.24757 1.41546 1.20462 0.85345 0.78984 0.77976 0.78365 1.18913 1.19639 1.20782 0.92504 0.90158 0.89410 0.75085 0.86755 0.89918 0.91725 0.90279 0.90408 0.91596 0.90394 0.91865 0.91058 0.91175 0.90448 0.88963 0.95659 0.98010 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.22 71.98 0.66 -3.36 16 2 C 0.13 4.16 2.15 44.24 0.10 4.26 16 3 H 0.11 3.33 6.90 -2.39 -0.02 3.31 16 4 N -0.71 -20.12 5.01 -446.11 -2.24 -22.36 16 5 C 0.52 13.92 7.10 87.66 0.62 14.54 16 6 O -0.57 -18.48 15.08 -3.03 -0.05 -18.53 16 7 C -0.11 -2.18 3.26 -10.34 -0.03 -2.21 16 8 C -0.11 -1.83 6.34 32.01 0.20 -1.63 16 9 C -0.12 -1.48 6.82 31.67 0.22 -1.26 16 10 C -0.12 -1.63 6.80 31.32 0.21 -1.41 16 11 C -0.11 -2.04 6.18 31.32 0.19 -1.84 16 12 C 0.50 20.37 6.97 87.66 0.61 20.98 16 13 O -0.58 -28.63 15.42 -3.04 -0.05 -28.67 16 14 N -0.60 -25.22 2.86 -851.12 -2.43 -27.65 16 15 C 0.07 2.02 9.85 127.77 1.26 3.28 16 16 C 0.26 13.72 5.16 85.64 0.44 14.16 16 17 C -0.54 -30.51 9.39 25.60 0.24 -30.27 16 18 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 19 C 0.01 0.43 5.46 84.65 0.46 0.89 16 20 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 21 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 25 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 27 H 0.09 2.14 5.83 -2.39 -0.01 2.13 16 28 H 0.41 11.62 7.72 -92.71 -0.72 10.91 16 29 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.08 1.22 8.14 -2.38 -0.02 1.21 16 31 H 0.06 1.15 8.06 -2.39 -0.02 1.13 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.06 1.44 6.85 -2.39 -0.02 1.42 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 2.38 8.03 -2.39 -0.02 2.37 16 40 H 0.09 2.26 4.58 -2.38 -0.01 2.25 16 41 H 0.03 1.37 8.07 -2.38 -0.02 1.35 16 42 H 0.00 0.11 7.37 -2.39 -0.02 0.09 16 43 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -71.91 348.17 3.02 -68.88 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.28 Total: 21.31 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 5.19 Total: 16.13 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -4.38 Total: -105.18 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -0.09 Total: -47.20 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -71.91 3.02 -68.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330653028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.696 kcal (2) G-P(sol) polarization free energy of solvation -71.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds