Wall clock time and date at job start Tue Mar 31 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 N 1.46504 * 109.46822 * 184.99666 * 4 2 1 6 6 C 1.34773 * 119.99935 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00498 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00130 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.47367 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.46974 * 180.02562 * 9 8 6 11 11 H 1.07996 * 119.99906 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99773 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99947 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99910 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47264 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46864 * 120.00128 * 14 12 10 17 17 H 1.48497 * 109.47295 * 240.00053 * 14 12 10 18 18 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 19 19 C 1.45756 * 117.94496 * 239.99917 * 18 2 1 20 20 C 1.52919 * 110.48705 * 160.92138 * 19 18 2 21 21 C 1.53352 * 108.67299 * 50.75605 * 20 19 18 22 22 C 1.53066 * 108.42276 * 292.46435 * 21 20 19 23 23 C 1.33355 * 117.94942 * 59.73076 * 18 2 1 24 24 O 1.21278 * 118.24246 * 2.23277 * 23 18 2 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 29 29 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 30 30 H 0.96995 * 120.00028 * 0.02562 * 5 4 2 31 31 H 1.08994 * 109.47356 * 300.00782 * 8 6 5 32 32 H 1.09009 * 109.46639 * 60.00595 * 8 6 5 33 33 H 1.09006 * 109.46860 * 300.00639 * 9 8 6 34 34 H 1.08996 * 109.46735 * 60.00442 * 9 8 6 35 35 H 0.96995 * 119.99951 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.29745 * 281.23925 * 19 18 2 37 37 H 1.09004 * 109.30135 * 40.61216 * 19 18 2 38 38 H 1.09003 * 109.59823 * 170.50489 * 20 19 18 39 39 H 1.08997 * 109.60679 * 290.99444 * 20 19 18 40 40 H 1.08992 * 109.67488 * 52.19959 * 21 20 19 41 41 H 1.08999 * 109.67182 * 172.73616 * 21 20 19 42 42 H 1.09001 * 109.40001 * 169.02900 * 22 21 20 43 43 H 1.08997 * 109.40166 * 288.86164 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1729 -1.4292 -2.1908 7 8 3.5698 -1.8843 -3.1395 8 6 5.6749 -1.5368 -2.1308 9 6 6.1849 -2.2582 -3.3800 10 6 7.6868 -2.3663 -3.3197 11 1 8.2238 -1.9607 -2.4751 12 6 8.3753 -2.9822 -4.3433 13 7 7.7213 -3.4748 -5.3725 14 14 10.2370 -3.1156 -4.2689 15 1 10.7286 -2.4871 -3.0165 16 1 10.6319 -4.5470 -4.2920 17 1 10.8303 -2.4194 -5.4386 18 7 2.0184 -0.6907 1.1961 19 6 2.8531 0.0603 2.1255 20 6 2.8769 -0.6213 3.4942 21 6 3.2233 -2.1024 3.2992 22 6 2.0609 -2.7788 2.5682 23 6 1.6670 -1.9654 1.3691 24 8 0.9974 -2.4978 0.5094 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6053 -1.7198 -1.2952 29 1 1.7516 -0.1584 -2.1370 30 1 3.9824 -0.4628 -0.4317 31 1 6.1092 -0.5382 -2.0856 32 1 5.9637 -2.0992 -1.2428 33 1 5.7505 -3.2569 -3.4256 34 1 5.8961 -1.6955 -4.2677 35 1 8.2056 -3.9084 -6.0924 36 1 3.8685 0.1164 1.7332 37 1 2.4552 1.0695 2.2325 38 1 3.6307 -0.1494 4.1246 39 1 1.8971 -0.5336 3.9636 40 1 4.1323 -2.1914 2.7045 41 1 3.3713 -2.5755 4.2699 42 1 2.3651 -3.7756 2.2487 43 1 1.2075 -2.8591 3.2414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330886794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:06 Heat of formation + Delta-G solvation = -89.625230 kcal Electronic energy + Delta-G solvation = -22856.927546 eV Core-core repulsion = 19515.373895 eV Total energy + Delta-G solvation = -3341.553651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03674 -38.88518 -36.69292 -35.99843 -33.45104 -33.32771 -31.27212 -30.70735 -29.78441 -26.79956 -25.08185 -24.67859 -23.48019 -21.60229 -21.14281 -19.58951 -18.61983 -17.20438 -16.90524 -16.42479 -15.98530 -15.49071 -15.12423 -14.96764 -14.64289 -14.43869 -14.37587 -14.14358 -13.54797 -13.35584 -13.01260 -12.81531 -12.40798 -12.27114 -12.16034 -11.95220 -11.83069 -11.65436 -11.33879 -11.22493 -11.11036 -11.03524 -10.92016 -10.55501 -9.91601 -9.61442 -9.60119 -9.11784 -8.99641 -8.85814 -8.56329 -8.28747 -5.92757 -3.97150 2.53089 2.71101 3.34185 3.38679 3.40865 3.44134 3.67143 4.25532 4.33348 4.37407 4.47923 4.50087 4.71788 4.87230 5.02450 5.04268 5.09751 5.14199 5.36929 5.39125 5.42000 5.51191 5.54572 5.57946 5.60863 5.65098 5.77942 5.82558 6.07532 6.16871 6.27022 6.28913 6.42120 6.84918 6.94662 7.29919 7.78434 7.91582 7.99436 8.07299 8.11803 8.42793 8.90280 9.12200 9.66109 11.18300 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021757 B = 0.003690 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.643447 B = 7585.932270 C = 8226.101960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.133 3.867 3 H 0.090 0.910 4 C 0.101 3.899 5 N -0.740 5.740 6 C 0.508 3.492 7 O -0.534 6.534 8 C -0.128 4.128 9 C 0.037 3.963 10 C -0.526 4.526 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.889 5.889 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.602 5.602 19 C 0.110 3.890 20 C -0.134 4.134 21 C -0.126 4.126 22 C -0.135 4.135 23 C 0.518 3.482 24 O -0.539 6.539 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.390 0.610 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.260 0.740 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.360 9.732 21.980 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.030 3.970 3 H 0.108 0.892 4 C -0.024 4.024 5 N -0.394 5.394 6 C 0.296 3.704 7 O -0.409 6.409 8 C -0.168 4.168 9 C -0.001 4.001 10 C -0.564 4.564 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 N -0.336 5.336 19 C -0.013 4.013 20 C -0.172 4.172 21 C -0.163 4.163 22 C -0.175 4.175 23 C 0.307 3.693 24 O -0.417 6.417 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.224 0.776 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.119 0.881 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.121 9.005 20.662 26.081 hybrid contribution 1.313 0.223 0.457 1.408 sum -11.808 9.228 21.119 25.896 Atomic orbital electron populations 1.22130 0.93808 1.04684 1.01875 1.21375 0.95484 0.95869 0.84301 0.89230 1.21775 0.81390 1.03216 0.96028 1.46088 1.06829 1.62066 1.24410 1.21510 0.91370 0.76237 0.81313 1.90670 1.70655 1.46424 1.33120 1.21839 0.88396 1.02612 1.03975 1.18899 0.94859 0.95884 0.90462 1.21259 0.91990 1.37589 1.05572 0.92615 1.25032 0.98347 0.95569 0.95471 1.70013 1.35331 1.38341 1.09104 0.86540 0.85831 0.77711 0.77896 1.19785 1.21029 1.21025 1.47429 1.51315 1.11625 1.23276 1.21490 0.94966 0.95420 0.89384 1.21870 1.03019 0.96173 0.96147 1.21671 0.98330 0.95032 1.01296 1.21673 1.00089 1.00152 0.95572 1.20106 0.79619 0.81409 0.88157 1.90677 1.39123 1.69181 1.42707 0.92583 0.91421 0.89734 0.88959 0.91433 0.77648 0.90466 0.90566 0.95838 0.95822 0.93022 0.91496 0.90610 0.89675 0.91037 0.90696 0.90535 0.88102 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.08 37.16 0.34 -1.27 16 2 C 0.13 1.34 2.76 -67.93 -0.19 1.15 16 3 H 0.09 0.70 7.79 -51.93 -0.40 0.30 16 4 C 0.10 1.45 4.85 -4.04 -0.02 1.43 16 5 N -0.74 -11.38 5.39 -60.29 -0.32 -11.71 16 6 C 0.51 10.53 7.83 -10.98 -0.09 10.44 16 7 O -0.53 -13.62 15.98 5.56 0.09 -13.53 16 8 C -0.13 -2.72 5.64 -27.88 -0.16 -2.88 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.53 -15.22 9.11 -34.44 -0.31 -15.54 16 11 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.96 13.29 55.43 0.74 -27.22 16 14 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 N -0.60 -5.56 2.24 -167.37 -0.38 -5.94 16 19 C 0.11 0.65 6.12 -4.48 -0.03 0.62 16 20 C -0.13 -0.63 6.02 -26.59 -0.16 -0.79 16 21 C -0.13 -0.76 6.04 -26.52 -0.16 -0.92 16 22 C -0.14 -1.13 6.03 -28.11 -0.17 -1.30 16 23 C 0.52 6.00 6.88 -11.88 -0.08 5.92 16 24 O -0.54 -8.49 12.52 5.56 0.07 -8.42 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.04 5.99 -51.93 -0.31 0.73 16 28 H 0.09 1.66 6.01 -51.93 -0.31 1.35 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.39 4.77 7.45 -40.82 -0.30 4.47 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 33 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 36 H 0.07 0.37 7.58 -51.93 -0.39 -0.02 16 37 H 0.08 0.33 8.03 -51.93 -0.42 -0.09 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 40 H 0.07 0.53 8.13 -51.93 -0.42 0.10 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -37.22 344.98 -8.04 -45.26 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.17 Total: 0.10 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.24 Total: -0.63 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.04 Total: -44.87 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.16 Total: -21.95 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.22 -8.04 -45.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330886794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.363 kcal (2) G-P(sol) polarization free energy of solvation -37.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds