Wall clock time and date at job start Tue Mar 31 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47033 * 2 1 4 4 N 1.46501 * 109.46845 * 240.00169 * 2 1 3 5 5 C 1.34770 * 120.00231 * 85.00439 * 4 2 1 6 6 O 1.21282 * 120.00149 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00235 * 179.97438 * 5 4 2 8 8 C 1.52990 * 109.47383 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.47524 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99188 * 0.02562 * 9 8 7 11 11 C 1.37867 * 120.00294 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00065 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 120.00246 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.46628 * 89.99598 * 13 11 9 15 15 H 1.48499 * 109.47305 * 209.99718 * 13 11 9 16 16 H 1.48501 * 109.46948 * 330.00322 * 13 11 9 17 17 C 1.50693 * 109.46838 * 119.99960 * 2 1 3 18 18 O 1.21283 * 120.00162 * 103.08322 * 17 2 1 19 19 N 1.34777 * 120.00223 * 282.80383 * 17 2 1 20 20 C 1.46924 * 120.63056 * 174.84475 * 19 17 2 21 21 C 1.53629 * 108.54347 * 126.37052 * 20 19 17 22 22 C 1.53036 * 109.24532 * 54.85127 * 21 20 19 23 23 C 1.53045 * 109.53645 * 298.51524 * 22 21 20 24 24 C 1.46929 * 120.62996 * 355.11861 * 19 17 2 25 25 H 1.09004 * 109.47218 * 174.29870 * 1 2 3 26 26 H 1.08995 * 109.47331 * 294.29908 * 1 2 3 27 27 H 1.09006 * 109.47040 * 54.30350 * 1 2 3 28 28 H 0.97006 * 119.99527 * 264.99211 * 4 2 1 29 29 H 1.09004 * 109.46717 * 300.00002 * 7 5 4 30 30 H 1.08998 * 109.46976 * 59.99066 * 7 5 4 31 31 H 1.09004 * 109.47562 * 299.99933 * 8 7 5 32 32 H 1.09008 * 109.47443 * 59.99934 * 8 7 5 33 33 H 0.97001 * 120.00317 * 180.02562 * 12 11 9 34 34 H 1.09003 * 109.58113 * 246.19728 * 20 19 17 35 35 H 1.08994 * 109.59003 * 6.62541 * 20 19 17 36 36 H 1.09003 * 109.62659 * 294.86073 * 21 20 19 37 37 H 1.08997 * 109.42966 * 174.72657 * 21 20 19 38 38 H 1.09000 * 109.46135 * 178.49511 * 22 21 20 39 39 H 1.08997 * 109.45786 * 58.53305 * 22 21 20 40 40 H 1.09006 * 109.49613 * 301.40862 * 23 22 21 41 41 H 1.09001 * 109.49736 * 181.31433 * 23 22 21 42 42 H 1.09004 * 109.58302 * 353.37609 * 24 19 17 43 43 H 1.08997 * 109.58529 * 113.79727 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1584 -2.4117 7 6 2.6499 -0.7285 -3.5875 8 6 2.7007 0.2543 -4.7588 9 6 3.2042 -0.4557 -5.9891 10 1 3.4616 -1.5035 -5.9403 11 6 3.3350 0.2318 -7.1769 12 7 3.7739 -0.3880 -8.2506 13 14 2.8890 2.0439 -7.2613 14 1 4.0855 2.8635 -6.9422 15 1 2.4135 2.3735 -8.6290 16 1 1.8134 2.3351 -6.2796 17 6 2.0323 -0.7104 1.2304 18 8 2.4585 -1.8426 1.1455 19 7 2.0130 -0.0855 2.4244 20 6 2.3928 -0.8012 3.6501 21 6 3.4879 0.0038 4.3664 22 6 2.9919 1.4323 4.6012 23 6 2.7046 2.1021 3.2554 24 6 1.6060 1.3226 2.5259 25 1 -0.3634 -1.0226 -0.1021 26 1 -0.3634 0.4229 0.9366 27 1 -0.3633 0.5997 -0.8346 28 1 2.2491 -1.6318 -1.1526 29 1 3.6492 -1.1204 -3.3979 30 1 1.9777 -1.5509 -3.8325 31 1 1.7013 0.6459 -4.9484 32 1 3.3728 1.0770 -4.5140 33 1 3.8663 0.0958 -9.0862 34 1 1.5234 -0.8994 4.3001 35 1 2.7731 -1.7898 3.3931 36 1 4.3870 0.0274 3.7506 37 1 3.7145 -0.4648 5.3241 38 1 3.7559 1.9992 5.1332 39 1 2.0790 1.4065 5.1962 40 1 3.6111 2.1060 2.6502 41 1 2.3736 3.1271 3.4225 42 1 1.4669 1.7357 1.5268 43 1 0.6737 1.3941 3.0861 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330890080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:56 Heat of formation + Delta-G solvation = -90.123773 kcal Electronic energy + Delta-G solvation = -22461.267161 eV Core-core repulsion = 19119.691891 eV Total energy + Delta-G solvation = -3341.575270 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.81321 -39.16978 -37.68381 -35.00984 -33.45575 -33.34878 -31.75460 -31.32684 -30.18631 -26.31168 -26.03457 -24.25131 -23.39959 -21.57173 -20.72614 -19.86779 -19.28303 -17.76359 -16.95911 -16.63688 -15.95494 -15.61025 -15.28484 -14.99481 -14.88895 -14.35732 -14.25104 -14.05603 -13.68037 -13.62117 -13.25277 -12.87909 -12.71960 -12.55396 -12.49291 -12.27461 -11.78638 -11.66518 -11.40100 -11.37674 -11.12466 -11.00688 -10.93943 -10.15896 -10.04141 -9.94908 -9.76965 -9.27347 -9.15038 -9.03157 -8.96606 -8.48489 -6.00473 -3.99134 2.28028 2.51753 3.09699 3.39193 3.44982 3.46667 3.56180 4.08084 4.30169 4.43572 4.49260 4.52724 4.63821 4.81944 4.86730 4.93971 5.05384 5.10314 5.30583 5.31605 5.34816 5.36820 5.41334 5.48705 5.53517 5.62610 5.65514 5.69825 5.89284 5.98464 6.11267 6.13722 6.14824 6.52239 6.72893 7.00422 7.38276 7.45813 7.76701 7.81219 7.82983 8.52141 8.63535 9.03047 9.62372 11.12445 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030460 B = 0.003212 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.010650 B = 8716.334063 C = 8995.104981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 H 0.109 0.891 4 N -0.727 5.727 5 C 0.515 3.485 6 O -0.542 6.542 7 C -0.121 4.121 8 C 0.002 3.998 9 C -0.524 4.524 10 H 0.073 0.927 11 C 0.068 3.932 12 N -0.904 5.904 13 Si 0.878 3.122 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.261 1.261 17 C 0.517 3.483 18 O -0.534 6.534 19 N -0.610 5.610 20 C 0.110 3.890 21 C -0.135 4.135 22 C -0.120 4.120 23 C -0.138 4.138 24 C 0.101 3.899 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.409 0.591 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.024 0.976 32 H 0.019 0.981 33 H 0.263 0.737 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 2.716 28.857 29.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.015 3.985 3 H 0.126 0.874 4 N -0.383 5.383 5 C 0.304 3.696 6 O -0.418 6.418 7 C -0.161 4.161 8 C -0.036 4.036 9 C -0.562 4.562 10 H 0.091 0.909 11 C -0.133 4.133 12 N -0.543 5.543 13 Si 0.705 3.295 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.185 1.185 17 C 0.304 3.696 18 O -0.411 6.411 19 N -0.345 5.345 20 C -0.012 4.012 21 C -0.174 4.174 22 C -0.158 4.158 23 C -0.176 4.176 24 C -0.022 4.022 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.246 0.754 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.289 2.980 28.564 29.202 hybrid contribution -0.041 0.548 -0.011 0.550 sum -5.330 3.528 28.553 29.260 Atomic orbital electron populations 1.22126 0.92831 1.03515 1.03187 1.20706 0.95781 0.98021 0.83973 0.87356 1.46058 1.68954 1.14862 1.08384 1.21594 0.76085 0.87478 0.84423 1.90635 1.49731 1.16442 1.85038 1.21674 1.01876 1.00666 0.91899 1.19370 0.97733 0.94379 0.92068 1.21125 1.44009 0.98396 0.92706 0.90895 1.24976 0.94463 0.98308 0.95542 1.69916 1.46857 1.36735 1.00786 0.86787 0.79758 0.85732 0.77218 1.20272 1.21476 1.18521 1.20774 0.77596 0.86647 0.84551 1.90684 1.46219 1.18865 1.85289 1.48046 1.67260 1.12291 1.06864 1.21709 0.97623 0.96906 0.84957 1.21993 0.98696 0.95875 1.00789 1.21519 1.01475 0.95801 0.96959 1.21940 0.99474 0.99291 0.96891 1.21913 0.97616 0.80287 1.02402 0.91595 0.91533 0.90312 0.75432 0.89454 0.89389 0.95787 0.96283 0.92738 0.91398 0.88834 0.91341 0.90690 0.91547 0.91699 0.91186 0.90332 0.89058 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.27 37.16 0.34 -1.34 16 2 C 0.12 1.55 2.13 -69.08 -0.15 1.41 16 3 H 0.11 1.38 5.92 -51.93 -0.31 1.07 16 4 N -0.73 -10.82 5.03 -54.94 -0.28 -11.09 16 5 C 0.52 9.54 7.79 -10.99 -0.09 9.46 16 6 O -0.54 -11.64 15.65 5.56 0.09 -11.55 16 7 C -0.12 -2.42 5.64 -27.89 -0.16 -2.58 16 8 C 0.00 0.06 3.33 -27.89 -0.09 -0.03 16 9 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 10 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 13 Si 0.88 22.67 27.47 -169.99 -4.67 18.01 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 17 C 0.52 6.31 6.96 -10.99 -0.08 6.23 16 18 O -0.53 -8.08 15.30 5.56 0.09 -7.99 16 19 N -0.61 -5.62 2.97 -172.51 -0.51 -6.14 16 20 C 0.11 0.87 6.47 -3.48 -0.02 0.85 16 21 C -0.14 -0.87 6.10 -26.39 -0.16 -1.03 16 22 C -0.12 -0.65 5.88 -26.69 -0.16 -0.80 16 23 C -0.14 -0.84 6.08 -26.61 -0.16 -1.00 16 24 C 0.10 0.69 5.50 -3.71 -0.02 0.67 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.54 7.24 -51.93 -0.38 0.16 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.41 5.73 7.72 -40.82 -0.32 5.42 16 29 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 32 H 0.02 0.49 7.53 -51.92 -0.39 0.10 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.89 7.00 -51.93 -0.36 0.53 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.65 5.34 -51.93 -0.28 0.38 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -34.96 343.32 -7.57 -42.53 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.06 Total: 0.36 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.17 Total: -1.77 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.01 Total: -44.75 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.17 Total: -19.55 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.67 Total: 18.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.96 -7.57 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330890080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.594 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds