Wall clock time and date at job start Tue Mar 31 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47033 * 2 1 4 4 N 1.46501 * 109.46845 * 240.00169 * 2 1 3 5 5 C 1.34770 * 120.00231 * 85.00439 * 4 2 1 6 6 O 1.21282 * 120.00149 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00235 * 179.97438 * 5 4 2 8 8 C 1.52990 * 109.47383 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.47524 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99188 * 0.02562 * 9 8 7 11 11 C 1.37867 * 120.00294 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00065 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 120.00246 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.46628 * 89.99598 * 13 11 9 15 15 H 1.48499 * 109.47305 * 209.99718 * 13 11 9 16 16 H 1.48501 * 109.46948 * 330.00322 * 13 11 9 17 17 C 1.50693 * 109.46838 * 119.99960 * 2 1 3 18 18 O 1.21283 * 120.00162 * 103.08322 * 17 2 1 19 19 N 1.34777 * 120.00223 * 282.80383 * 17 2 1 20 20 C 1.46924 * 120.63056 * 174.84475 * 19 17 2 21 21 C 1.53629 * 108.54347 * 126.37052 * 20 19 17 22 22 C 1.53036 * 109.24532 * 54.85127 * 21 20 19 23 23 C 1.53045 * 109.53645 * 298.51524 * 22 21 20 24 24 C 1.46929 * 120.62996 * 355.11861 * 19 17 2 25 25 H 1.09004 * 109.47218 * 174.29870 * 1 2 3 26 26 H 1.08995 * 109.47331 * 294.29908 * 1 2 3 27 27 H 1.09006 * 109.47040 * 54.30350 * 1 2 3 28 28 H 0.97006 * 119.99527 * 264.99211 * 4 2 1 29 29 H 1.09004 * 109.46717 * 300.00002 * 7 5 4 30 30 H 1.08998 * 109.46976 * 59.99066 * 7 5 4 31 31 H 1.09004 * 109.47562 * 299.99933 * 8 7 5 32 32 H 1.09008 * 109.47443 * 59.99934 * 8 7 5 33 33 H 0.97001 * 120.00317 * 180.02562 * 12 11 9 34 34 H 1.09003 * 109.58113 * 246.19728 * 20 19 17 35 35 H 1.08994 * 109.59003 * 6.62541 * 20 19 17 36 36 H 1.09003 * 109.62659 * 294.86073 * 21 20 19 37 37 H 1.08997 * 109.42966 * 174.72657 * 21 20 19 38 38 H 1.09000 * 109.46135 * 178.49511 * 22 21 20 39 39 H 1.08997 * 109.45786 * 58.53305 * 22 21 20 40 40 H 1.09006 * 109.49613 * 301.40862 * 23 22 21 41 41 H 1.09001 * 109.49736 * 181.31433 * 23 22 21 42 42 H 1.09004 * 109.58302 * 353.37609 * 24 19 17 43 43 H 1.08997 * 109.58529 * 113.79727 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1584 -2.4117 7 6 2.6499 -0.7285 -3.5875 8 6 2.7007 0.2543 -4.7588 9 6 3.2042 -0.4557 -5.9891 10 1 3.4616 -1.5035 -5.9403 11 6 3.3350 0.2318 -7.1769 12 7 3.7739 -0.3880 -8.2506 13 14 2.8890 2.0439 -7.2613 14 1 4.0855 2.8635 -6.9422 15 1 2.4135 2.3735 -8.6290 16 1 1.8134 2.3351 -6.2796 17 6 2.0323 -0.7104 1.2304 18 8 2.4585 -1.8426 1.1455 19 7 2.0130 -0.0855 2.4244 20 6 2.3928 -0.8012 3.6501 21 6 3.4879 0.0038 4.3664 22 6 2.9919 1.4323 4.6012 23 6 2.7046 2.1021 3.2554 24 6 1.6060 1.3226 2.5259 25 1 -0.3634 -1.0226 -0.1021 26 1 -0.3634 0.4229 0.9366 27 1 -0.3633 0.5997 -0.8346 28 1 2.2491 -1.6318 -1.1526 29 1 3.6492 -1.1204 -3.3979 30 1 1.9777 -1.5509 -3.8325 31 1 1.7013 0.6459 -4.9484 32 1 3.3728 1.0770 -4.5140 33 1 3.8663 0.0958 -9.0862 34 1 1.5234 -0.8994 4.3001 35 1 2.7731 -1.7898 3.3931 36 1 4.3870 0.0274 3.7506 37 1 3.7145 -0.4648 5.3241 38 1 3.7559 1.9992 5.1332 39 1 2.0790 1.4065 5.1962 40 1 3.6111 2.1060 2.6502 41 1 2.3736 3.1271 3.4225 42 1 1.4669 1.7357 1.5268 43 1 0.6737 1.3941 3.0861 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330890080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:55 Heat of formation + Delta-G solvation = -114.331238 kcal Electronic energy + Delta-G solvation = -22462.316875 eV Core-core repulsion = 19119.691891 eV Total energy + Delta-G solvation = -3342.624984 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.76185 -40.47580 -38.48376 -36.23614 -35.50133 -34.11891 -33.38743 -32.28781 -31.30800 -28.02765 -26.91688 -25.11532 -24.15936 -23.08451 -21.67734 -21.27928 -20.13138 -19.30575 -18.41493 -17.80285 -17.22511 -16.75102 -16.35270 -16.19704 -16.15157 -15.47619 -15.12895 -14.96622 -14.90759 -14.61226 -14.50891 -14.33389 -14.02561 -13.59483 -13.42278 -13.34817 -13.20939 -12.90988 -12.71309 -12.23792 -12.12141 -11.96490 -11.89371 -11.75748 -11.66590 -11.51938 -11.40284 -10.93263 -10.81723 -10.77578 -10.23841 -9.74465 -8.30696 -6.34377 1.33013 1.35131 1.36483 1.51824 1.59894 1.70290 2.29057 2.36221 3.04801 3.24232 3.74044 3.89452 3.92634 3.95591 4.03080 4.06188 4.10417 4.33526 4.37927 4.47081 4.47758 4.55980 4.60607 4.70562 4.81351 4.88503 4.90678 4.97481 5.02304 5.10663 5.13878 5.21997 5.27434 5.38016 5.42833 5.44602 5.50431 5.61139 6.19685 6.23752 6.46156 6.72030 6.92167 7.19792 7.30909 8.85224 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030460 B = 0.003212 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.010650 B = 8716.334063 C = 8995.104981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.121 3.879 3 H 0.109 0.891 4 N -0.714 5.714 5 C 0.523 3.477 6 O -0.574 6.574 7 C -0.118 4.118 8 C 0.008 3.992 9 C -0.532 4.532 10 H 0.046 0.954 11 C 0.011 3.989 12 N -0.946 5.946 13 Si 0.943 3.057 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.257 1.257 17 C 0.515 3.485 18 O -0.571 6.571 19 N -0.603 5.603 20 C 0.106 3.894 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.137 4.137 24 C 0.094 3.906 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.064 0.936 28 H 0.414 0.586 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.015 0.985 32 H 0.011 0.989 33 H 0.267 0.733 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.509 4.179 31.404 32.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.013 3.987 3 H 0.126 0.874 4 N -0.368 5.368 5 C 0.312 3.688 6 O -0.453 6.453 7 C -0.158 4.158 8 C -0.030 4.030 9 C -0.570 4.570 10 H 0.064 0.936 11 C -0.186 4.186 12 N -0.586 5.586 13 Si 0.767 3.233 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.181 1.181 17 C 0.303 3.697 18 O -0.451 6.451 19 N -0.335 5.335 20 C -0.015 4.015 21 C -0.170 4.170 22 C -0.154 4.154 23 C -0.175 4.175 24 C -0.028 4.028 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.252 0.748 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.450 4.443 31.175 32.144 hybrid contribution 0.344 0.021 -0.716 0.795 sum -6.105 4.464 30.459 31.384 Atomic orbital electron populations 1.22072 0.91093 1.03467 1.04262 1.20906 0.97109 0.97633 0.83090 0.87381 1.45871 1.67680 1.15013 1.08268 1.21104 0.75978 0.86845 0.84899 1.90622 1.51493 1.17564 1.85605 1.21506 1.03173 0.99887 0.91231 1.19210 0.96509 0.94873 0.92422 1.21440 1.43555 0.97581 0.94402 0.93552 1.25859 0.94507 1.03027 0.95243 1.70037 1.48287 1.38736 1.01557 0.85764 0.79774 0.80142 0.77655 1.19325 1.20385 1.18114 1.20666 0.77576 0.86199 0.85257 1.90671 1.48183 1.20363 1.85869 1.48151 1.65842 1.13231 1.06308 1.21860 0.98996 0.96031 0.84639 1.21974 0.97292 0.96773 1.00950 1.21522 1.02424 0.94737 0.96730 1.21949 0.98370 1.00327 0.96872 1.22172 0.99056 0.78681 1.02886 0.91663 0.88473 0.91695 0.74820 0.88441 0.88039 0.96651 0.97025 0.92363 0.89069 0.90968 0.93403 0.89002 0.90861 0.90036 0.93159 0.88479 0.89436 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.27 71.98 0.67 -2.28 16 2 C 0.12 2.88 2.13 44.24 0.09 2.98 16 3 H 0.11 2.64 5.92 -2.39 -0.01 2.62 16 4 N -0.71 -20.73 5.03 -446.11 -2.24 -22.97 16 5 C 0.52 19.06 7.79 87.66 0.68 19.74 16 6 O -0.57 -24.29 15.65 -3.04 -0.05 -24.33 16 7 C -0.12 -4.68 5.64 29.85 0.17 -4.52 16 8 C 0.01 0.39 3.33 29.85 0.10 0.49 16 9 C -0.53 -31.29 9.66 25.60 0.25 -31.04 16 10 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16 11 C 0.01 0.67 5.47 84.65 0.46 1.13 16 12 N -0.95 -60.04 13.96 21.44 0.30 -59.74 16 13 Si 0.94 46.83 27.47 68.60 1.88 48.72 16 14 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 15 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.26 -12.53 6.54 99.48 0.65 -11.88 16 17 C 0.52 12.07 6.96 87.65 0.61 12.68 16 18 O -0.57 -17.15 15.30 -3.04 -0.05 -17.19 16 19 N -0.60 -10.02 2.97 -818.08 -2.43 -12.45 16 20 C 0.11 1.49 6.47 86.51 0.56 2.05 16 21 C -0.13 -1.44 6.10 30.82 0.19 -1.26 16 22 C -0.12 -0.92 5.88 30.62 0.18 -0.74 16 23 C -0.14 -1.33 6.08 30.67 0.19 -1.14 16 24 C 0.09 1.02 5.50 86.36 0.47 1.50 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 26 H 0.10 1.28 7.24 -2.39 -0.02 1.26 16 27 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.41 11.36 7.72 -92.70 -0.72 10.64 16 29 H 0.10 3.64 8.14 -2.38 -0.02 3.62 16 30 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 31 H 0.02 0.79 7.16 -2.38 -0.02 0.77 16 32 H 0.01 0.59 7.53 -2.38 -0.02 0.57 16 33 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.35 7.00 -2.39 -0.02 1.33 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.09 1.05 5.34 -2.38 -0.01 1.04 16 43 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -76.01 343.32 2.27 -73.74 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.23 Total: 14.63 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 4.62 Total: -0.40 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -4.37 Total: -95.16 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.09 Total: -41.53 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.88 Total: 48.72 kcal Total: -76.01 2.27 -73.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330890080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.590 kcal (2) G-P(sol) polarization free energy of solvation -76.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds