Wall clock time and date at job start Tue Mar 31 2020 05:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.50699 * 109.46636 * 174.99847 * 4 2 1 6 6 O 1.21280 * 120.00199 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99691 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99759 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47214 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99555 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99903 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99684 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00490 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47034 * 89.99900 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00271 * 13 11 9 16 16 H 1.48507 * 109.46906 * 330.00247 * 13 11 9 17 17 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 18 18 C 1.34784 * 119.99635 * 274.99773 * 17 2 1 19 19 O 1.21279 * 119.99925 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99961 * 180.02562 * 18 17 2 21 21 C 1.54274 * 110.03139 * 297.90611 * 20 18 17 22 22 C 1.54960 * 104.15934 * 217.13316 * 21 20 18 23 23 C 1.54890 * 102.77769 * 37.89262 * 22 21 20 24 24 C 1.53870 * 110.03530 * 180.69114 * 20 18 17 25 25 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 26 26 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 28 28 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 29 29 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 30 30 H 0.96994 * 119.99679 * 0.02562 * 7 5 4 31 31 H 1.08995 * 109.47725 * 300.00913 * 8 7 5 32 32 H 1.09002 * 109.47122 * 60.00751 * 8 7 5 33 33 H 0.97002 * 120.00509 * 179.97438 * 12 11 9 34 34 H 0.96995 * 120.00292 * 95.27206 * 17 2 1 35 35 H 1.08997 * 110.01573 * 59.29300 * 20 18 17 36 36 H 1.08999 * 110.48561 * 335.78565 * 21 20 18 37 37 H 1.09004 * 110.48438 * 98.42226 * 21 20 18 38 38 H 1.08994 * 110.72279 * 279.57290 * 22 21 20 39 39 H 1.09007 * 110.91921 * 156.29317 * 22 21 20 40 40 H 1.09000 * 110.48895 * 203.40575 * 23 22 21 41 41 H 1.08995 * 110.60291 * 80.81173 * 23 22 21 42 42 H 1.08993 * 110.03088 * 238.57172 * 24 20 18 43 43 H 1.09007 * 110.02608 * 359.97438 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 8 4.1450 -0.0211 -0.4441 7 7 4.2149 -1.1805 -2.3344 8 6 5.6748 -1.0766 -2.3965 9 6 6.1772 -1.7871 -3.6269 10 1 5.4787 -2.2676 -4.2960 11 6 7.5285 -1.8237 -3.8984 12 7 7.9668 -2.4434 -4.9724 13 14 8.7366 -0.9933 -2.7408 14 1 9.1717 -1.9611 -1.7019 15 1 9.9187 -0.5277 -3.5097 16 1 8.0799 0.1691 -2.0905 17 7 2.0184 -0.6907 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8591 1.1585 2.4114 20 6 2.6500 -0.7286 3.5874 21 6 1.6794 -1.8628 3.9766 22 6 1.6764 -1.8442 5.5261 23 6 1.7424 -0.3311 5.8506 24 6 2.6905 0.2447 4.7785 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.7516 -1.7715 -1.2057 29 1 1.6054 -0.2617 -2.1370 30 1 3.7325 -1.6557 -3.0289 31 1 5.9629 -0.0264 -2.4407 32 1 6.1098 -1.5355 -1.5086 33 1 8.9174 -2.4689 -5.1637 34 1 2.2528 -1.6308 1.1515 35 1 3.6444 -1.1350 3.4033 36 1 0.6804 -1.6592 3.5908 37 1 2.0443 -2.8210 3.6064 38 1 2.5509 -2.3623 5.9197 39 1 0.7595 -2.2839 5.9189 40 1 2.1530 -0.1724 6.8478 41 1 0.7545 0.1220 5.7693 42 1 3.7044 0.3100 5.1729 43 1 2.3468 1.2310 4.4665 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331202285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:42 Heat of formation + Delta-G solvation = -104.587060 kcal Electronic energy + Delta-G solvation = -22414.951330 eV Core-core repulsion = 19072.748885 eV Total energy + Delta-G solvation = -3342.202445 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.26563 -39.03927 -37.26820 -35.58588 -34.25988 -32.42433 -31.77491 -29.25386 -28.81528 -28.64615 -27.03775 -23.07097 -22.07937 -21.05147 -20.67067 -19.92312 -19.49645 -17.56538 -17.23081 -16.38261 -16.02340 -15.75553 -15.24940 -14.87987 -14.67049 -14.48694 -14.16001 -13.58828 -13.37977 -13.32874 -12.83051 -12.68274 -12.55344 -12.37737 -11.92752 -11.78030 -11.70596 -11.42751 -11.31442 -11.23420 -11.07957 -10.98328 -10.92669 -10.79033 -10.63600 -10.00249 -9.59376 -9.53389 -9.26880 -8.92490 -8.81034 -8.18312 -6.24970 -4.27457 2.80507 3.16427 3.24019 3.29984 3.31002 3.39750 3.90318 4.30383 4.32153 4.42663 4.58008 4.72494 5.04994 5.08092 5.10408 5.20113 5.22724 5.26819 5.33953 5.43984 5.45444 5.48854 5.51132 5.57168 5.63341 5.69685 5.72216 5.88506 5.99852 6.03273 6.12755 6.17565 6.24496 6.62289 6.77226 7.03424 7.18664 7.35942 7.62197 8.09598 8.38312 8.47757 8.71458 8.90018 9.35307 10.86975 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020146 B = 0.003671 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.519854 B = 7625.154552 C = 8422.680868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.158 3.842 3 H 0.095 0.905 4 C -0.153 4.153 5 C 0.494 3.506 6 O -0.548 6.548 7 N -0.707 5.707 8 C 0.221 3.779 9 C -0.544 4.544 10 H 0.079 0.921 11 C 0.078 3.922 12 N -0.892 5.892 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.261 1.261 17 N -0.711 5.711 18 C 0.528 3.472 19 O -0.544 6.544 20 C -0.115 4.115 21 C -0.114 4.114 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.119 4.119 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.396 0.604 31 H 0.024 0.976 32 H 0.019 0.981 33 H 0.268 0.732 34 H 0.397 0.603 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.000 -0.337 16.037 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.053 3.947 3 H 0.113 0.887 4 C -0.194 4.194 5 C 0.279 3.721 6 O -0.427 6.427 7 N -0.356 5.356 8 C 0.099 3.901 9 C -0.582 4.582 10 H 0.097 0.903 11 C -0.126 4.126 12 N -0.530 5.530 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.185 1.185 17 N -0.361 5.361 18 C 0.314 3.686 19 O -0.422 6.422 20 C -0.137 4.137 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.157 4.157 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.229 0.771 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.230 0.770 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.571 0.897 16.552 22.743 hybrid contribution 0.782 -0.467 -0.135 0.920 sum -14.790 0.430 16.417 22.101 Atomic orbital electron populations 1.22183 0.95112 1.02018 1.02655 1.20640 0.92984 0.98230 0.82861 0.88718 1.22061 0.94332 1.03094 0.99865 1.20496 0.89381 0.79782 0.82459 1.90697 1.70226 1.42867 1.38908 1.46215 1.09806 1.54524 1.25033 1.19467 0.75958 0.97233 0.97472 1.21093 0.93613 1.35970 1.07534 0.90276 1.24799 0.98156 0.94520 0.95149 1.69879 1.15139 1.42181 1.25753 0.86815 0.80908 0.80868 0.81085 1.19871 1.20854 1.18543 1.45822 1.67169 1.13728 1.09394 1.20390 0.76721 0.87023 0.84435 1.90629 1.50601 1.16030 1.84913 1.21950 1.00955 0.96984 0.93783 1.22360 0.99043 0.97305 0.96482 1.22508 1.01812 0.96706 0.95100 1.22358 0.99881 0.95299 0.98560 1.22153 0.99994 1.00170 0.93374 0.91529 0.92481 0.91957 0.88770 0.87694 0.77061 0.95808 0.96294 0.92232 0.76969 0.88337 0.91226 0.90918 0.91270 0.91476 0.91663 0.91655 0.91543 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.48 37.16 0.35 -1.24 16 2 C 0.16 2.00 2.14 -67.93 -0.15 1.86 16 3 H 0.09 1.53 7.39 -51.93 -0.38 1.14 16 4 C -0.15 -1.80 5.24 -27.88 -0.15 -1.95 16 5 C 0.49 8.74 7.69 -10.98 -0.08 8.65 16 6 O -0.55 -11.95 15.35 5.56 0.09 -11.86 16 7 N -0.71 -13.61 5.55 -61.47 -0.34 -13.96 16 8 C 0.22 5.34 4.50 -5.19 -0.02 5.32 16 9 C -0.54 -14.73 9.83 -34.44 -0.34 -15.07 16 10 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 11 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 12 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 13 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 17 N -0.71 -9.00 4.16 -53.80 -0.22 -9.23 16 18 C 0.53 7.53 6.97 -10.98 -0.08 7.46 16 19 O -0.54 -9.68 14.87 5.56 0.08 -9.59 16 20 C -0.12 -1.29 3.29 -90.65 -0.30 -1.59 16 21 C -0.11 -0.97 6.30 -25.03 -0.16 -1.13 16 22 C -0.12 -0.95 6.91 -24.70 -0.17 -1.12 16 23 C -0.12 -1.08 6.83 -25.07 -0.17 -1.25 16 24 C -0.12 -1.32 6.40 -25.61 -0.16 -1.48 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.40 6.62 8.32 -40.82 -0.34 6.28 16 31 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 32 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.40 4.26 8.59 -40.82 -0.35 3.91 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.20 6.39 -51.92 -0.33 0.87 16 LS Contribution 350.32 15.07 5.28 5.28 Total: -1.00 -33.92 350.32 -7.77 -41.68 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.23 Total: 5.96 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.52 Total: 0.53 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.21 Total: -48.72 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: 0.17 Total: -21.46 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.92 -7.77 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331202285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.905 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds