Wall clock time and date at job start Tue Mar 31 2020 05:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47422 * 2 1 4 4 N 1.46499 * 109.47042 * 239.99438 * 2 1 3 5 5 C 1.34780 * 119.99881 * 85.00733 * 4 2 1 6 6 O 1.21288 * 119.99916 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00146 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.46878 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46900 * 299.99462 * 7 5 4 10 10 C 1.52997 * 109.47208 * 60.00117 * 7 5 4 11 11 C 1.50699 * 109.46848 * 120.00206 * 2 1 3 12 12 O 1.21286 * 120.00537 * 119.99833 * 11 2 1 13 13 N 1.34783 * 120.00071 * 299.99685 * 11 2 1 14 14 C 1.37100 * 120.00431 * 180.02562 * 13 11 2 15 15 H 1.08000 * 119.99790 * 222.93835 * 14 13 11 16 16 C 1.38949 * 119.99765 * 42.93545 * 14 13 11 17 17 N 1.31414 * 120.00228 * 18.91236 * 16 14 13 18 18 Si 1.86804 * 119.99624 * 198.91445 * 16 14 13 19 19 H 1.48497 * 109.47315 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46974 * 120.00270 * 18 16 14 21 21 H 1.48502 * 109.46796 * 240.00160 * 18 16 14 22 22 C 1.46503 * 119.99775 * 0.27645 * 13 11 2 23 23 C 1.52996 * 117.50107 * 187.31020 * 22 13 11 24 24 C 1.52997 * 117.49846 * 118.65002 * 22 13 11 25 25 H 1.09006 * 109.46858 * 60.00010 * 1 2 3 26 26 H 1.08995 * 109.47422 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47147 * 300.00033 * 1 2 3 28 28 H 0.97000 * 120.00715 * 265.00152 * 4 2 1 29 29 H 1.09006 * 109.47525 * 59.99880 * 8 7 5 30 30 H 1.09003 * 109.47019 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47340 * 299.99987 * 8 7 5 32 32 H 1.09001 * 109.47118 * 60.00214 * 9 7 5 33 33 H 1.09003 * 109.46915 * 180.02562 * 9 7 5 34 34 H 1.08997 * 109.47029 * 300.00024 * 9 7 5 35 35 H 1.08995 * 109.47435 * 59.99513 * 10 7 5 36 36 H 1.09002 * 109.47219 * 180.02562 * 10 7 5 37 37 H 1.09001 * 109.46721 * 299.99731 * 10 7 5 38 38 H 0.96996 * 119.99593 * 174.91085 * 17 16 14 39 39 H 1.09004 * 115.54891 * 332.98448 * 22 13 11 40 40 H 1.09002 * 117.49806 * 359.97438 * 23 22 13 41 41 H 1.09001 * 117.49671 * 145.02058 * 23 22 13 42 42 H 1.09000 * 117.50136 * 214.98332 * 24 22 13 43 43 H 1.09001 * 117.49830 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8584 1.1583 -2.4117 7 6 2.6500 -0.7287 -3.5874 8 6 2.7009 0.2542 -4.7587 9 6 4.0527 -1.2787 -3.3212 10 6 1.7064 -1.8829 -3.9314 11 6 2.0323 -0.7105 1.2304 12 8 2.7295 -1.6966 1.1193 13 7 1.7067 -0.2500 2.4546 14 6 2.1640 -0.8960 3.5741 15 1 1.5011 -1.0620 4.4104 16 6 3.4803 -1.3371 3.6326 17 7 4.3789 -0.8338 2.8164 18 14 3.9726 -2.6456 4.8715 19 1 2.7847 -3.0449 5.6682 20 1 4.5088 -3.8300 4.1539 21 1 5.0157 -2.1017 5.7777 22 6 0.8595 0.9377 2.5890 23 6 0.6654 1.5117 3.9938 24 6 -0.4827 0.7707 3.3041 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 2.2490 -1.6319 -1.1526 29 1 3.3729 1.0769 -4.5140 30 1 3.0650 -0.2594 -5.6485 31 1 1.7014 0.6457 -4.9482 32 1 4.0161 -1.9790 -2.4867 33 1 4.4166 -1.7920 -4.2112 34 1 4.7249 -0.4563 -3.0761 35 1 0.7071 -1.4911 -4.1210 36 1 2.0704 -2.3969 -4.8210 37 1 1.6698 -2.5832 -3.0970 38 1 5.3110 -1.0867 2.9058 39 1 0.9032 1.6427 1.7588 40 1 1.1677 1.0055 4.8182 41 1 0.5811 2.5944 4.0878 42 1 -1.3220 1.3661 2.9447 43 1 -0.7356 -0.2228 3.6742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331763988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:41 Heat of formation + Delta-G solvation = -42.951471 kcal Electronic energy + Delta-G solvation = -23728.507932 eV Core-core repulsion = 20388.978207 eV Total energy + Delta-G solvation = -3339.529725 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01974 -38.70867 -36.28417 -35.45234 -34.40207 -32.73519 -31.23791 -29.83177 -27.30884 -27.04442 -25.24488 -24.06319 -22.17678 -21.73543 -20.94206 -19.36625 -19.20872 -16.98849 -16.16414 -15.88523 -15.67891 -14.91928 -14.68415 -14.42299 -13.97130 -13.82338 -13.59500 -13.46577 -13.25024 -12.77174 -12.33422 -12.26525 -12.24095 -12.02253 -11.77242 -11.66146 -11.40440 -11.22467 -10.96476 -10.93259 -10.90096 -10.86528 -10.80542 -10.59901 -10.19347 -9.97018 -9.75424 -9.31404 -8.83723 -8.61289 -8.05000 -7.09605 -6.16324 -3.91521 3.00732 3.26196 3.35469 3.37583 3.54303 4.02070 4.22764 4.72520 4.74936 4.81054 4.86385 4.94085 5.18112 5.34381 5.50683 5.55672 5.57869 5.62264 5.68874 5.73624 5.76597 5.82686 5.84959 5.89236 5.94790 5.98243 6.09481 6.18386 6.20669 6.27861 6.31674 6.35613 6.41835 6.61349 6.71381 6.90647 6.93371 7.56910 7.99747 8.19581 8.63200 8.98479 9.06392 9.58356 10.17536 10.92291 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.005762 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.821698 B = 4858.026205 C = 5896.650454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 H 0.094 0.906 4 N -0.698 5.698 5 C 0.522 3.478 6 O -0.552 6.552 7 C -0.086 4.086 8 C -0.124 4.124 9 C -0.141 4.141 10 C -0.140 4.140 11 C 0.478 3.522 12 O -0.532 6.532 13 N -0.419 5.419 14 C -0.350 4.350 15 H 0.080 0.920 16 C 0.073 3.927 17 N -0.829 5.829 18 Si 0.913 3.087 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.286 1.286 22 C 0.071 3.929 23 C -0.175 4.175 24 C -0.206 4.206 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.406 0.594 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.264 0.736 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.513 0.582 -9.160 10.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 H 0.111 0.889 4 N -0.350 5.350 5 C 0.308 3.692 6 O -0.431 6.431 7 C -0.089 4.089 8 C -0.182 4.182 9 C -0.199 4.199 10 C -0.197 4.197 11 C 0.265 3.735 12 O -0.410 6.410 13 N -0.139 5.139 14 C -0.476 4.476 15 H 0.098 0.902 16 C -0.138 4.138 17 N -0.462 5.462 18 Si 0.740 3.260 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.212 1.212 22 C -0.035 4.035 23 C -0.213 4.213 24 C -0.245 4.245 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.243 0.757 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.143 0.835 -9.332 10.688 hybrid contribution 0.493 -0.874 0.724 1.238 sum -4.650 -0.040 -8.608 9.784 Atomic orbital electron populations 1.22298 0.94334 1.02489 1.02978 1.20757 0.94491 0.97655 0.85301 0.88861 1.45760 1.65938 1.14756 1.08554 1.20467 0.77273 0.87039 0.84433 1.90642 1.51053 1.16069 1.85303 1.20786 0.97217 0.96877 0.94036 1.21634 1.02797 0.98225 0.95542 1.21870 0.94185 1.01511 1.02336 1.21859 0.98824 0.96844 1.02192 1.19661 0.84304 0.85988 0.83546 1.90507 1.38125 1.27340 1.84984 1.42663 1.44721 1.21730 1.04785 1.18911 0.94847 1.37633 0.96222 0.90208 1.25234 0.95507 0.96858 0.96174 1.69853 1.01406 1.39302 1.35606 0.86140 0.78370 0.81644 0.79833 1.19568 1.20677 1.21199 1.21800 0.93995 0.92065 0.95683 1.23134 1.01869 0.98593 0.97659 1.23344 0.92403 1.02028 1.06714 0.92489 0.92535 0.89914 0.75676 0.92010 0.92353 0.92103 0.91552 0.91712 0.92040 0.92187 0.91599 0.91921 0.92601 0.87555 0.87429 0.89724 0.89642 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.11 37.16 0.34 -2.44 16 2 C 0.13 2.57 2.20 -69.08 -0.15 2.41 16 3 H 0.09 2.01 7.01 -51.93 -0.36 1.65 16 4 N -0.70 -12.91 4.74 -54.93 -0.26 -13.17 16 5 C 0.52 9.11 6.45 -10.99 -0.07 9.04 16 6 O -0.55 -11.20 15.65 5.55 0.09 -11.12 16 7 C -0.09 -1.14 0.87 -155.66 -0.14 -1.28 16 8 C -0.12 -1.51 7.76 37.16 0.29 -1.23 16 9 C -0.14 -1.80 8.37 37.16 0.31 -1.49 16 10 C -0.14 -1.54 8.37 37.16 0.31 -1.23 16 11 C 0.48 11.76 6.44 -10.98 -0.07 11.69 16 12 O -0.53 -14.82 13.49 5.55 0.07 -14.74 16 13 N -0.42 -10.18 2.85 -107.73 -0.31 -10.49 16 14 C -0.35 -9.27 7.84 -14.93 -0.12 -9.38 16 15 H 0.08 2.05 7.38 -52.49 -0.39 1.66 16 16 C 0.07 2.01 4.36 -17.47 -0.08 1.94 16 17 N -0.83 -24.12 11.66 55.50 0.65 -23.47 16 18 Si 0.91 21.47 29.60 -169.99 -5.03 16.44 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.07 1.39 4.30 -67.93 -0.29 1.10 16 23 C -0.17 -3.10 9.81 -26.70 -0.26 -3.36 16 24 C -0.21 -3.41 9.38 -26.70 -0.25 -3.66 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.35 4.34 -51.93 -0.23 1.12 16 28 H 0.41 7.39 6.63 -40.82 -0.27 7.12 16 29 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.07 0.90 7.56 -51.93 -0.39 0.51 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.70 7.56 -51.93 -0.39 0.31 16 38 H 0.26 7.37 8.32 -40.82 -0.34 7.03 16 39 H 0.11 1.95 6.24 -51.93 -0.32 1.63 16 40 H 0.11 2.11 6.82 -51.93 -0.35 1.76 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -32.30 344.05 -6.70 -39.00 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.92 Total: 10.25 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.18 Total: 2.12 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.08 Total: -47.13 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: 0.16 Total: -25.86 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.30 -6.70 -39.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331763988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.954 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds