Wall clock time and date at job start Tue Mar 31 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 3 8 8 C 1.44575 * 118.64225 * 359.74047 * 7 5 4 9 9 C 1.54310 * 109.90605 * 270.84692 * 8 7 5 10 10 C 1.47090 * 110.29911 * 288.76388 * 9 8 7 11 11 C 1.52572 * 114.32691 * 62.72867 * 10 9 8 12 12 C 1.50878 * 109.35423 * 274.98360 * 11 10 9 13 13 C 1.47610 * 118.63934 * 180.02562 * 7 5 4 14 14 C 1.34781 * 119.99832 * 269.99624 * 3 2 1 15 15 O 1.21688 * 120.00263 * 180.02562 * 14 3 2 16 16 C 1.46375 * 119.99743 * 0.02562 * 14 3 2 17 17 H 1.08002 * 120.00388 * 359.97438 * 16 14 3 18 18 C 1.40050 * 119.99748 * 179.97438 * 16 14 3 19 19 N 1.30670 * 120.00094 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99943 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47091 * 60.00270 * 20 18 16 22 22 H 1.48505 * 109.47095 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47418 * 300.00209 * 20 18 16 24 24 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 25 25 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 26 26 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 28 28 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 29 29 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 30 30 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 31 31 H 1.08996 * 109.45489 * 30.75799 * 8 7 5 32 32 H 1.08998 * 109.44865 * 150.68295 * 8 7 5 33 33 H 1.08999 * 109.40443 * 168.46733 * 9 8 7 34 34 H 1.09003 * 109.28133 * 48.97585 * 9 8 7 35 35 H 1.09006 * 108.51267 * 301.47983 * 10 9 8 36 36 H 1.08993 * 108.51773 * 183.98817 * 10 9 8 37 37 H 1.08999 * 109.48584 * 155.02229 * 11 10 9 38 38 H 1.08998 * 109.48797 * 34.94798 * 11 10 9 39 39 H 1.09000 * 109.37039 * 331.69492 * 12 11 10 40 40 H 1.08999 * 109.36415 * 212.07744 * 12 11 10 41 41 H 1.08992 * 108.94482 * 258.55657 * 13 7 5 42 42 H 1.08994 * 108.94817 * 17.27503 * 13 7 5 43 43 H 0.97001 * 120.00200 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 8 0.0060 2.7177 1.0213 7 7 0.9951 3.4888 2.8514 8 6 2.2022 3.5406 3.6454 9 6 2.2255 2.3639 4.6434 10 6 1.2276 2.5741 5.7034 11 6 -0.2146 2.6230 5.2082 12 6 -0.5399 4.0244 4.7536 13 6 -0.2513 4.1723 3.2491 14 6 2.2430 2.0166 -1.1673 15 8 2.6490 3.1637 -1.1673 16 6 1.9985 1.3266 -2.4348 17 1 1.6386 0.3084 -2.4348 18 6 2.2315 1.9870 -3.6477 19 7 2.6675 3.2188 -3.6478 20 14 1.9203 1.1063 -5.2654 21 1 0.4927 0.7050 -5.3439 22 1 2.2408 2.0165 -6.3942 23 1 2.7793 -0.1025 -5.3443 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.0644 2.7986 1.1383 30 1 2.5506 1.3453 2.0283 31 1 3.0708 3.4721 2.9904 32 1 2.2355 4.4816 4.1944 33 1 3.2166 2.2880 5.0908 34 1 1.9998 1.4383 4.1139 35 1 1.4521 3.5135 6.2087 36 1 1.3173 1.7653 6.4285 37 1 -0.8868 2.3379 6.0175 38 1 -0.3361 1.9325 4.3736 39 1 0.0699 4.7358 5.3105 40 1 -1.5938 4.2298 4.9413 41 1 -0.1663 5.2318 3.0078 42 1 -1.0828 3.7473 2.6870 43 1 2.8284 3.6763 -4.4879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331858320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:29 Heat of formation + Delta-G solvation = -73.109845 kcal Electronic energy + Delta-G solvation = -23812.070810 eV Core-core repulsion = 20471.233319 eV Total energy + Delta-G solvation = -3340.837490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08857 -37.95607 -36.79178 -34.15680 -33.67731 -32.77067 -32.45044 -29.98828 -27.66782 -26.67002 -25.63554 -24.82986 -22.22229 -21.73828 -20.53781 -19.40956 -18.30281 -16.92958 -16.36897 -16.24387 -15.66727 -15.45817 -14.59768 -14.41632 -14.34312 -13.95474 -13.80815 -13.32906 -13.05576 -12.88613 -12.60601 -12.36164 -12.16876 -12.02464 -11.74391 -11.51620 -11.23085 -11.10734 -11.02258 -10.89892 -10.83447 -10.77377 -10.66988 -10.47663 -10.33806 -10.18976 -9.85942 -9.22692 -8.76951 -8.30168 -7.55162 -7.22669 -6.12821 -4.56192 3.20094 3.24327 3.24988 3.26259 3.31215 4.14332 4.50552 4.60071 4.64077 4.72093 4.81266 4.96589 5.07365 5.15875 5.32770 5.49782 5.54351 5.63378 5.67325 5.73277 5.82972 5.84005 5.89038 5.93027 6.00233 6.04416 6.06079 6.11010 6.17906 6.27701 6.29818 6.38738 6.46387 6.80412 6.89700 7.19084 7.51987 7.60161 7.79686 8.17643 8.38625 8.81106 9.09275 9.46869 10.64221 10.83066 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030303 B = 0.004554 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.791128 B = 6147.439662 C = 6299.441855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 N -0.625 5.625 4 C 0.112 3.888 5 C 0.492 3.508 6 O -0.516 6.516 7 N -0.615 5.615 8 C 0.112 3.888 9 C -0.141 4.141 10 C -0.114 4.114 11 C -0.116 4.116 12 C -0.129 4.129 13 C 0.112 3.888 14 C 0.564 3.436 15 O -0.578 6.578 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.087 3.913 19 N -0.768 5.768 20 Si 0.906 3.094 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.268 1.268 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 -2.692 17.535 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.003 3.997 3 N -0.362 5.362 4 C -0.016 4.016 5 C 0.279 3.721 6 O -0.389 6.389 7 N -0.352 5.352 8 C -0.012 4.012 9 C -0.179 4.179 10 C -0.152 4.152 11 C -0.154 4.154 12 C -0.167 4.167 13 C -0.010 4.010 14 C 0.370 3.630 15 O -0.461 6.461 16 C -0.573 4.573 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.730 3.270 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.193 1.193 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.271 -1.919 17.014 17.272 hybrid contribution -0.275 -0.374 -0.572 0.736 sum -2.546 -2.293 16.442 16.795 Atomic orbital electron populations 1.22175 0.97215 0.99315 1.03284 1.21186 0.93749 0.83916 1.00819 1.47876 1.71083 1.13156 1.04060 1.20957 0.94612 0.97218 0.88850 1.22028 0.91864 0.78477 0.79707 1.90654 1.35354 1.60511 1.52425 1.47789 1.11649 1.52682 1.23040 1.21407 0.87545 0.98362 0.93895 1.21243 0.99490 0.99616 0.97584 1.20426 0.94871 1.01727 0.98162 1.21054 0.96134 0.97322 1.00867 1.21750 1.01640 0.97496 0.95810 1.21686 0.87827 0.96709 0.94798 1.18199 0.77013 0.85623 0.82125 1.90582 1.50853 1.18485 1.86134 1.20927 1.46969 1.00386 0.89049 0.90974 1.25729 0.92873 0.94375 1.00248 1.70016 1.32310 1.10139 1.27234 0.86469 0.79554 0.79769 0.81187 1.19260 1.20625 1.19257 0.92910 0.91714 0.94176 0.90134 0.93698 0.88250 0.90166 0.90083 0.90862 0.90850 0.91606 0.92423 0.92704 0.92261 0.91483 0.91836 0.91100 0.92584 0.89550 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.50 37.16 0.35 -2.77 16 2 C 0.13 2.51 5.88 -4.04 -0.02 2.48 16 3 N -0.63 -14.65 2.02 -176.72 -0.36 -15.01 16 4 C 0.11 2.19 4.42 -5.19 -0.02 2.16 16 5 C 0.49 9.70 7.60 -10.98 -0.08 9.62 16 6 O -0.52 -12.33 13.30 5.56 0.07 -12.26 16 7 N -0.62 -9.29 2.25 -172.92 -0.39 -9.68 16 8 C 0.11 1.29 5.13 -4.38 -0.02 1.27 16 9 C -0.14 -1.33 5.61 -28.88 -0.16 -1.49 16 10 C -0.11 -1.00 5.15 -29.79 -0.15 -1.16 16 11 C -0.12 -1.15 5.51 -28.02 -0.15 -1.31 16 12 C -0.13 -1.28 5.71 -27.32 -0.16 -1.44 16 13 C 0.11 1.53 6.10 -2.96 -0.02 1.51 16 14 C 0.56 16.48 7.61 -12.99 -0.10 16.38 16 15 O -0.58 -19.05 14.60 5.20 0.08 -18.97 16 16 C -0.54 -15.47 8.74 -35.63 -0.31 -15.78 16 17 H 0.07 1.91 6.00 -52.49 -0.31 1.59 16 18 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 19 N -0.77 -23.55 11.83 55.55 0.66 -22.89 16 20 Si 0.91 20.66 29.56 -169.99 -5.02 15.63 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H 0.05 1.05 6.39 -51.93 -0.33 0.72 16 25 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.62 6.09 -51.93 -0.32 1.30 16 28 H 0.04 0.72 7.89 -51.93 -0.41 0.32 16 29 H 0.10 2.05 6.59 -51.93 -0.34 1.71 16 30 H 0.08 1.23 6.83 -51.93 -0.35 0.88 16 31 H 0.08 0.96 6.25 -51.93 -0.32 0.64 16 32 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.70 7.28 -51.93 -0.38 0.32 16 35 H 0.06 0.46 7.36 -51.93 -0.38 0.08 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.82 7.48 -51.93 -0.39 0.44 16 39 H 0.06 0.56 7.32 -51.93 -0.38 0.18 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.37 6.95 -51.93 -0.36 1.01 16 43 H 0.27 7.47 8.29 -40.82 -0.34 7.14 16 LS Contribution 333.11 15.07 5.02 5.02 Total: -1.00 -36.83 333.11 -7.69 -44.52 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.80 Total: 1.75 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -0.95 Total: 11.88 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.09 Total: -47.58 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: 0.15 Total: -31.23 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.83 -7.69 -44.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331858320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.588 kcal (2) G-P(sol) polarization free energy of solvation -36.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds