Wall clock time and date at job start Tue Mar 31 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 3 8 8 C 1.44575 * 118.64225 * 359.74047 * 7 5 4 9 9 C 1.54310 * 109.90605 * 270.84692 * 8 7 5 10 10 C 1.47090 * 110.29911 * 288.76388 * 9 8 7 11 11 C 1.52572 * 114.32691 * 62.72867 * 10 9 8 12 12 C 1.50878 * 109.35423 * 274.98360 * 11 10 9 13 13 C 1.47610 * 118.63934 * 180.02562 * 7 5 4 14 14 C 1.34781 * 119.99832 * 269.99624 * 3 2 1 15 15 O 1.21688 * 120.00263 * 180.02562 * 14 3 2 16 16 C 1.46375 * 119.99743 * 0.02562 * 14 3 2 17 17 H 1.08002 * 120.00388 * 359.97438 * 16 14 3 18 18 C 1.40050 * 119.99748 * 179.97438 * 16 14 3 19 19 N 1.30670 * 120.00094 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99943 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47091 * 60.00270 * 20 18 16 22 22 H 1.48505 * 109.47095 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47418 * 300.00209 * 20 18 16 24 24 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 25 25 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 26 26 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 28 28 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 29 29 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 30 30 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 31 31 H 1.08996 * 109.45489 * 30.75799 * 8 7 5 32 32 H 1.08998 * 109.44865 * 150.68295 * 8 7 5 33 33 H 1.08999 * 109.40443 * 168.46733 * 9 8 7 34 34 H 1.09003 * 109.28133 * 48.97585 * 9 8 7 35 35 H 1.09006 * 108.51267 * 301.47983 * 10 9 8 36 36 H 1.08993 * 108.51773 * 183.98817 * 10 9 8 37 37 H 1.08999 * 109.48584 * 155.02229 * 11 10 9 38 38 H 1.08998 * 109.48797 * 34.94798 * 11 10 9 39 39 H 1.09000 * 109.37039 * 331.69492 * 12 11 10 40 40 H 1.08999 * 109.36415 * 212.07744 * 12 11 10 41 41 H 1.08992 * 108.94482 * 258.55657 * 13 7 5 42 42 H 1.08994 * 108.94817 * 17.27503 * 13 7 5 43 43 H 0.97001 * 120.00200 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 8 0.0060 2.7177 1.0213 7 7 0.9951 3.4888 2.8514 8 6 2.2022 3.5406 3.6454 9 6 2.2255 2.3639 4.6434 10 6 1.2276 2.5741 5.7034 11 6 -0.2146 2.6230 5.2082 12 6 -0.5399 4.0244 4.7536 13 6 -0.2513 4.1723 3.2491 14 6 2.2430 2.0166 -1.1673 15 8 2.6490 3.1637 -1.1673 16 6 1.9985 1.3266 -2.4348 17 1 1.6386 0.3084 -2.4348 18 6 2.2315 1.9870 -3.6477 19 7 2.6675 3.2188 -3.6478 20 14 1.9203 1.1063 -5.2654 21 1 0.4927 0.7050 -5.3439 22 1 2.2408 2.0165 -6.3942 23 1 2.7793 -0.1025 -5.3443 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.0644 2.7986 1.1383 30 1 2.5506 1.3453 2.0283 31 1 3.0708 3.4721 2.9904 32 1 2.2355 4.4816 4.1944 33 1 3.2166 2.2880 5.0908 34 1 1.9998 1.4383 4.1139 35 1 1.4521 3.5135 6.2087 36 1 1.3173 1.7653 6.4285 37 1 -0.8868 2.3379 6.0175 38 1 -0.3361 1.9325 4.3736 39 1 0.0699 4.7358 5.3105 40 1 -1.5938 4.2298 4.9413 41 1 -0.1663 5.2318 3.0078 42 1 -1.0828 3.7473 2.6870 43 1 2.8284 3.6763 -4.4879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331858320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:29 Heat of formation + Delta-G solvation = -97.791378 kcal Electronic energy + Delta-G solvation = -23813.141081 eV Core-core repulsion = 20471.233319 eV Total energy + Delta-G solvation = -3341.907762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43697 -39.62252 -38.31543 -36.10824 -34.83302 -34.63787 -33.70989 -31.59540 -29.48675 -28.05294 -27.07694 -26.03900 -23.94338 -22.99114 -21.38690 -21.08338 -19.72965 -18.56215 -18.08138 -17.72171 -17.48080 -16.63697 -16.25008 -15.98016 -15.44755 -15.29791 -15.12193 -14.55637 -14.49177 -14.29851 -14.10229 -14.00677 -13.51450 -13.37373 -13.11395 -13.07377 -12.95732 -12.72706 -12.65965 -12.47821 -12.17747 -12.04649 -11.84202 -11.65775 -11.54523 -11.46936 -11.27670 -10.92864 -10.78873 -9.80555 -9.55153 -9.13115 -8.27241 -6.80598 1.37935 1.42167 1.52934 1.72018 2.00754 2.25446 2.51072 2.85687 3.55095 3.70270 3.92959 3.95579 4.00552 4.07502 4.16901 4.22195 4.30278 4.40145 4.46161 4.62841 4.67527 4.71810 4.74038 4.75010 4.89500 4.91247 4.98890 5.04290 5.14991 5.24289 5.28148 5.31528 5.36163 5.39026 5.51442 5.54743 5.76283 5.80391 6.12907 6.28789 6.52393 6.89772 7.32408 7.41271 8.49052 8.69508 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030303 B = 0.004554 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.791128 B = 6147.439662 C = 6299.441855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.122 3.878 3 N -0.629 5.629 4 C 0.112 3.888 5 C 0.486 3.514 6 O -0.571 6.571 7 N -0.604 5.604 8 C 0.100 3.900 9 C -0.133 4.133 10 C -0.114 4.114 11 C -0.116 4.116 12 C -0.117 4.117 13 C 0.108 3.892 14 C 0.547 3.453 15 O -0.631 6.631 16 C -0.564 4.564 17 H 0.090 0.910 18 C 0.027 3.973 19 N -0.823 5.823 20 Si 0.993 3.007 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.247 1.247 24 H 0.042 0.958 25 H 0.022 0.978 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 -4.467 19.517 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.001 4.001 3 N -0.363 5.363 4 C -0.016 4.016 5 C 0.274 3.726 6 O -0.449 6.449 7 N -0.338 5.338 8 C -0.022 4.022 9 C -0.171 4.171 10 C -0.152 4.152 11 C -0.154 4.154 12 C -0.155 4.155 13 C -0.014 4.014 14 C 0.354 3.646 15 O -0.519 6.519 16 C -0.600 4.600 17 H 0.108 0.892 18 C -0.187 4.187 19 N -0.453 5.453 20 Si 0.812 3.188 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.171 1.171 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.145 0.855 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.051 -3.725 19.099 19.567 hybrid contribution -0.346 0.212 -1.034 1.110 sum -2.397 -3.513 18.065 18.559 Atomic orbital electron populations 1.22029 0.97039 1.00908 1.00696 1.21434 0.93805 0.82077 1.02753 1.47679 1.70100 1.14512 1.04024 1.21156 0.94188 0.97920 0.88289 1.22023 0.91058 0.78931 0.80623 1.90631 1.36968 1.62846 1.54470 1.47819 1.13287 1.50780 1.21898 1.21759 0.85540 1.00818 0.94112 1.21204 1.01315 0.97577 0.97027 1.20431 0.93495 1.03191 0.98059 1.21070 0.97725 0.96288 1.00337 1.21711 1.02916 0.98334 0.92550 1.21817 0.86193 0.96002 0.97387 1.18552 0.76657 0.85245 0.84159 1.90522 1.53196 1.20632 1.87510 1.21453 1.47275 1.01422 0.89840 0.89204 1.26987 0.91774 0.95038 1.04915 1.70197 1.33871 1.12458 1.28739 0.85152 0.79891 0.78766 0.75000 1.18444 1.19887 1.17099 0.93870 0.95907 0.90296 0.90672 0.89118 0.89849 0.85549 0.90661 0.88631 0.88232 0.92853 0.90804 0.91284 0.90611 0.94382 0.89744 0.89821 0.92664 0.92576 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.71 9.50 71.98 0.68 -5.02 16 2 C 0.12 4.68 5.88 86.38 0.51 5.19 16 3 N -0.63 -30.01 2.02 -831.25 -1.68 -31.69 16 4 C 0.11 4.41 4.42 85.63 0.38 4.79 16 5 C 0.49 19.75 7.60 87.66 0.67 20.42 16 6 O -0.57 -28.79 13.30 -3.03 -0.04 -28.83 16 7 N -0.60 -18.22 2.25 -819.39 -1.85 -20.06 16 8 C 0.10 2.14 5.13 87.18 0.45 2.58 16 9 C -0.13 -2.10 5.61 29.20 0.16 -1.94 16 10 C -0.11 -1.58 5.15 28.61 0.15 -1.44 16 11 C -0.12 -2.03 5.51 29.76 0.16 -1.87 16 12 C -0.12 -2.09 5.71 30.21 0.17 -1.91 16 13 C 0.11 2.97 6.10 86.47 0.53 3.50 16 14 C 0.55 33.31 7.61 86.36 0.66 33.97 16 15 O -0.63 -43.91 14.60 -4.31 -0.06 -43.97 16 16 C -0.56 -33.36 8.74 24.83 0.22 -33.14 16 17 H 0.09 4.80 6.00 -2.91 -0.02 4.78 16 18 C 0.03 1.60 5.50 85.31 0.47 2.07 16 19 N -0.82 -52.46 11.83 21.84 0.26 -52.20 16 20 Si 0.99 42.85 29.56 68.60 2.03 44.88 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 23 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 24 H 0.04 1.73 6.39 -2.39 -0.02 1.72 16 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.07 2.95 6.09 -2.39 -0.01 2.94 16 28 H 0.09 2.65 7.89 -2.39 -0.02 2.63 16 29 H 0.08 3.56 6.59 -2.39 -0.02 3.55 16 30 H 0.13 3.67 6.83 -2.39 -0.02 3.65 16 31 H 0.08 1.71 6.25 -2.39 -0.01 1.70 16 32 H 0.10 1.64 8.06 -2.39 -0.02 1.62 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 0.99 7.28 -2.39 -0.02 0.98 16 35 H 0.07 0.83 7.36 -2.38 -0.02 0.81 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.04 0.89 7.48 -2.39 -0.02 0.88 16 39 H 0.08 1.19 7.32 -2.39 -0.02 1.18 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.06 1.89 6.95 -2.39 -0.02 1.87 16 43 H 0.27 15.79 8.29 -92.71 -0.77 15.02 16 Total: -1.00 -86.99 333.11 4.85 -82.13 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 1.00 Total: 22.55 kcal Atomic # 6 Polarization: 21.99 SS G_CDS: 5.20 Total: 27.19 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -3.27 Total: -103.95 kcal Atomic # 8 Polarization: -72.70 SS G_CDS: -0.10 Total: -72.80 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -86.99 4.85 -82.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331858320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.658 kcal (2) G-P(sol) polarization free energy of solvation -86.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds