Wall clock time and date at job start Tue Mar 31 2020 05:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47655 * 2 1 4 4 C 1.50703 * 109.47073 * 239.99759 * 2 1 3 5 5 H 1.08002 * 120.00184 * 245.45935 * 4 2 1 6 6 C 1.37879 * 120.00087 * 65.45540 * 4 2 1 7 7 N 1.31513 * 119.99578 * 9.62308 * 6 4 2 8 8 Si 1.86796 * 120.00091 * 189.61927 * 6 4 2 9 9 H 1.48500 * 109.47049 * 84.99714 * 8 6 4 10 10 H 1.48500 * 109.47236 * 204.99398 * 8 6 4 11 11 H 1.48502 * 109.47328 * 324.99945 * 8 6 4 12 12 N 1.46502 * 109.47068 * 120.00220 * 2 1 3 13 13 C 1.46495 * 120.00499 * 59.99621 * 12 2 1 14 14 C 1.34772 * 119.99695 * 239.99761 * 12 2 1 15 15 O 1.21280 * 120.00201 * 359.97438 * 14 12 2 16 16 C 1.50707 * 120.00004 * 179.97438 * 14 12 2 17 17 N 1.46503 * 109.47100 * 180.02562 * 16 14 12 18 18 C 1.47192 * 119.78935 * 89.99750 * 17 16 14 19 19 C 1.52987 * 108.66129 * 108.04273 * 18 17 16 20 20 C 1.51777 * 110.88390 * 86.47059 * 19 18 17 21 21 C 1.51792 * 113.70275 * 293.06257 * 20 19 18 22 22 C 1.52816 * 110.87698 * 66.88763 * 21 20 19 23 23 C 1.33372 * 119.78584 * 269.97699 * 17 16 14 24 24 O 1.21283 * 119.88877 * 0.28792 * 23 17 16 25 25 H 1.09003 * 109.46956 * 63.28546 * 1 2 3 26 26 H 1.09000 * 109.47364 * 183.28974 * 1 2 3 27 27 H 1.09000 * 109.46726 * 303.29296 * 1 2 3 28 28 H 0.97002 * 119.99478 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.47173 * 270.00296 * 13 12 2 30 30 H 1.09007 * 109.46873 * 29.99915 * 13 12 2 31 31 H 1.08995 * 109.47904 * 150.00126 * 13 12 2 32 32 H 1.09000 * 109.46924 * 60.00181 * 16 14 12 33 33 H 1.08991 * 109.47023 * 299.99669 * 16 14 12 34 34 H 1.08995 * 109.60449 * 348.29284 * 18 17 16 35 35 H 1.08992 * 109.60631 * 227.79736 * 18 17 16 36 36 H 1.09005 * 109.19474 * 326.10806 * 19 18 17 37 37 H 1.09003 * 109.19605 * 206.83592 * 19 18 17 38 38 H 1.08994 * 108.61848 * 54.11425 * 20 19 18 39 39 H 1.09004 * 108.61328 * 172.01633 * 20 19 18 40 40 H 1.08991 * 109.22463 * 187.06266 * 21 20 19 41 41 H 1.08996 * 109.22583 * 306.41216 * 21 20 19 42 42 H 1.08996 * 109.69404 * 155.30365 * 22 21 20 43 43 H 1.09002 * 109.83380 * 34.73997 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5786 -1.6371 -1.1338 6 6 1.7945 -0.1775 -2.4796 7 7 1.3003 1.0359 -2.5936 8 14 2.1742 -1.1789 -4.0101 9 1 1.0213 -2.0609 -4.3233 10 1 2.4213 -0.2628 -5.1524 11 1 3.3820 -2.0093 -3.7713 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0357 2.0833 15 8 3.0866 1.1253 1.8911 16 6 3.2951 -0.7459 3.3141 17 7 4.1086 0.1750 4.1117 18 6 3.4714 1.0036 5.1481 19 6 3.8742 0.4645 6.5220 20 6 5.1901 1.0693 6.9760 21 6 6.3799 0.6426 6.1356 22 6 6.2731 1.2013 4.7172 23 6 5.4219 0.2570 3.8945 24 8 5.9361 -0.4266 3.0347 25 1 -0.3633 0.4620 -0.9180 26 1 -0.3634 -1.0260 0.0590 27 1 -0.3633 0.5641 0.8590 28 1 1.1333 1.4109 -3.4724 29 1 0.7375 -2.1443 1.9994 30 1 1.5294 -2.5969 0.4708 31 1 2.4627 -2.5819 1.9864 32 1 3.9004 -1.6026 3.0177 33 1 2.4471 -1.0880 3.9073 34 1 2.3879 0.9556 5.0397 35 1 3.8060 2.0360 5.0479 36 1 3.9783 -0.6191 6.4653 37 1 3.0975 0.7116 7.2458 38 1 5.1065 2.1552 6.9349 39 1 5.3705 0.7740 8.0097 40 1 7.2957 1.0135 6.5956 41 1 6.4166 -0.4458 6.0917 42 1 7.2670 1.2767 4.2763 43 1 5.8076 2.1866 4.7419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331862950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:57 Heat of formation + Delta-G solvation = -74.452295 kcal Electronic energy + Delta-G solvation = -23369.121829 eV Core-core repulsion = 20028.226126 eV Total energy + Delta-G solvation = -3340.895703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45313 -38.67944 -36.66519 -35.38028 -34.41375 -32.78234 -31.15589 -30.01005 -28.27747 -26.12862 -25.70134 -25.12750 -23.92434 -21.40412 -20.73038 -19.04459 -18.09963 -17.20800 -16.83263 -16.57128 -15.96159 -15.38722 -14.77642 -14.61982 -14.28758 -14.07318 -14.03848 -13.58017 -13.48946 -12.84370 -12.80662 -12.43082 -12.37770 -12.18901 -11.76759 -11.69465 -11.52459 -11.43301 -11.04465 -10.96795 -10.95499 -10.87140 -10.79985 -10.70429 -10.25611 -10.14449 -9.57314 -9.32930 -9.16888 -8.39518 -8.31049 -7.56603 -6.04986 -4.09228 2.81195 3.06971 3.30267 3.36670 3.38629 3.43670 4.08527 4.38770 4.44864 4.57797 4.65389 4.66432 5.05342 5.18686 5.21179 5.26772 5.28338 5.36194 5.36360 5.51495 5.55793 5.67682 5.71978 5.76611 5.81915 5.87012 5.99421 6.01474 6.07170 6.36340 6.46810 6.68798 6.76291 7.00724 7.36978 7.52349 7.58105 7.73235 7.96913 8.21315 8.37547 8.56401 8.89703 9.10131 9.55551 11.02502 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028873 B = 0.004185 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.521972 B = 6689.017725 C = 7013.162597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.256 3.744 3 H 0.069 0.931 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.593 5.593 13 C 0.081 3.919 14 C 0.489 3.511 15 O -0.544 6.544 16 C 0.094 3.906 17 N -0.589 5.589 18 C 0.115 3.885 19 C -0.140 4.140 20 C -0.121 4.121 21 C -0.112 4.112 22 C -0.136 4.136 23 C 0.520 3.480 24 O -0.545 6.545 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.014 0.986 28 H 0.263 0.737 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 -2.448 20.261 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.156 3.844 3 H 0.086 0.914 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.325 5.325 13 C -0.063 4.063 14 C 0.274 3.726 15 O -0.422 6.422 16 C -0.033 4.033 17 N -0.321 5.321 18 C -0.008 4.008 19 C -0.178 4.178 20 C -0.159 4.159 21 C -0.150 4.150 22 C -0.176 4.176 23 C 0.308 3.692 24 O -0.423 6.423 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.391 -2.050 19.550 19.947 hybrid contribution -0.004 -0.572 -0.983 1.137 sum 3.386 -2.623 18.567 19.055 Atomic orbital electron populations 1.21999 0.98599 0.98797 1.00316 1.18927 0.90305 0.95101 0.80082 0.91366 1.21286 1.36380 1.08611 0.90422 0.92199 1.24898 0.95133 0.94628 0.98958 1.69977 1.44548 1.13723 1.24023 0.86565 0.78704 0.80043 0.82463 1.20491 1.21207 1.19917 1.48213 1.49197 1.11511 1.23576 1.21628 0.98657 0.83454 1.02541 1.20797 0.79335 0.87602 0.84819 1.90639 1.57693 1.17179 1.76656 1.21450 0.96224 0.93433 0.92180 1.47377 1.07109 1.41575 1.35998 1.21790 0.98489 0.94833 0.85706 1.21836 0.97642 1.01557 0.96796 1.21179 0.94189 1.01103 0.99425 1.21175 0.98731 1.01442 0.93614 1.21932 1.00839 0.99031 0.95829 1.20461 0.82174 0.83343 0.83214 1.90729 1.72555 1.45273 1.33706 0.90620 0.94946 0.96661 0.92727 0.93837 0.90002 0.92836 0.87435 0.88333 0.89706 0.90341 0.91186 0.90561 0.91707 0.91791 0.90841 0.91614 0.88612 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.12 37.16 0.34 -2.94 16 2 C 0.26 6.71 2.50 -69.08 -0.17 6.53 16 3 H 0.07 2.11 6.84 -51.93 -0.36 1.75 16 4 C -0.53 -14.77 8.01 -34.44 -0.28 -15.04 16 5 H 0.06 1.66 7.16 -52.49 -0.38 1.28 16 6 C 0.07 1.88 5.17 -17.82 -0.09 1.79 16 7 N -0.89 -25.97 12.16 55.43 0.67 -25.30 16 8 Si 0.89 21.62 29.55 -169.99 -5.02 16.60 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.59 -12.97 2.75 -175.26 -0.48 -13.45 16 13 C 0.08 1.36 9.16 59.84 0.55 1.91 16 14 C 0.49 10.52 7.74 -10.98 -0.09 10.44 16 15 O -0.54 -13.99 15.76 5.56 0.09 -13.91 16 16 C 0.09 1.48 4.35 -5.19 -0.02 1.46 16 17 N -0.59 -8.72 1.94 -174.60 -0.34 -9.06 16 18 C 0.11 1.23 5.88 -3.67 -0.02 1.21 16 19 C -0.14 -1.08 5.73 -27.36 -0.16 -1.23 16 20 C -0.12 -0.86 5.28 -27.96 -0.15 -1.00 16 21 C -0.11 -0.96 5.64 -27.44 -0.15 -1.12 16 22 C -0.14 -1.59 5.56 -27.62 -0.15 -1.75 16 23 C 0.52 8.56 6.78 -11.25 -0.08 8.48 16 24 O -0.55 -11.53 16.60 5.55 0.09 -11.44 16 25 H 0.07 1.96 6.84 -51.93 -0.36 1.60 16 26 H 0.03 0.69 7.56 -51.93 -0.39 0.30 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.47 6.92 -51.92 -0.36 1.11 16 31 H 0.05 0.75 6.44 -51.93 -0.33 0.41 16 32 H 0.11 1.74 6.64 -51.93 -0.34 1.40 16 33 H 0.10 1.17 7.99 -51.93 -0.42 0.75 16 34 H 0.08 0.87 7.92 -51.93 -0.41 0.46 16 35 H 0.08 0.84 6.71 -51.93 -0.35 0.49 16 36 H 0.07 0.58 8.05 -51.93 -0.42 0.17 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.42 7.89 -51.93 -0.41 0.01 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.63 7.86 -51.93 -0.41 0.22 16 42 H 0.10 1.12 8.13 -51.93 -0.42 0.69 16 43 H 0.09 0.96 6.79 -51.93 -0.35 0.61 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -35.89 339.79 -7.29 -43.18 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.95 Total: -0.49 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -0.47 Total: 8.74 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.15 Total: -47.80 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: 0.18 Total: -25.35 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.89 -7.29 -43.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331862950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.267 kcal (2) G-P(sol) polarization free energy of solvation -35.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds