Wall clock time and date at job start Tue Mar 31 2020 05:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46507 * 2 1 4 4 C 1.50696 * 109.47139 * 119.99646 * 2 1 3 5 5 H 1.08004 * 119.99880 * 119.99936 * 4 2 1 6 6 C 1.37871 * 120.00325 * 300.00661 * 4 2 1 7 7 N 1.31519 * 119.99897 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00255 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47053 * 89.99740 * 8 6 4 10 10 H 1.48502 * 109.46980 * 209.99714 * 8 6 4 11 11 H 1.48502 * 109.47016 * 329.99518 * 8 6 4 12 12 N 1.46499 * 109.47448 * 240.00074 * 2 1 3 13 13 C 1.46496 * 119.99927 * 299.99833 * 12 2 1 14 14 C 1.34775 * 120.00050 * 119.99480 * 12 2 1 15 15 O 1.21285 * 119.99949 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00239 * 179.97438 * 14 12 2 17 17 N 1.46500 * 109.47216 * 180.02562 * 16 14 12 18 18 C 1.47190 * 119.79088 * 89.99992 * 17 16 14 19 19 C 1.52991 * 108.66335 * 108.04122 * 18 17 16 20 20 C 1.51772 * 110.88240 * 86.46983 * 19 18 17 21 21 C 1.51794 * 113.70513 * 293.06474 * 20 19 18 22 22 C 1.52820 * 110.87643 * 66.88363 * 21 20 19 23 23 C 1.33371 * 119.78169 * 269.97830 * 17 16 14 24 24 O 1.21280 * 119.89329 * 0.27972 * 23 17 16 25 25 H 1.08996 * 109.47841 * 299.99778 * 1 2 3 26 26 H 1.09001 * 109.47149 * 60.00528 * 1 2 3 27 27 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 28 28 H 0.97009 * 119.99685 * 180.02562 * 7 6 4 29 29 H 1.08994 * 109.47313 * 270.00158 * 13 12 2 30 30 H 1.09004 * 109.47137 * 30.00199 * 13 12 2 31 31 H 1.09004 * 109.46849 * 149.99624 * 13 12 2 32 32 H 1.09002 * 109.46665 * 60.00202 * 16 14 12 33 33 H 1.08996 * 109.46890 * 300.00600 * 16 14 12 34 34 H 1.09000 * 109.60390 * 348.29052 * 18 17 16 35 35 H 1.08995 * 109.60592 * 227.79274 * 18 17 16 36 36 H 1.09006 * 109.19526 * 326.10350 * 19 18 17 37 37 H 1.08998 * 109.19018 * 206.83312 * 19 18 17 38 38 H 1.09002 * 108.61650 * 54.11569 * 20 19 18 39 39 H 1.08998 * 108.61318 * 172.01884 * 20 19 18 40 40 H 1.08996 * 109.22574 * 187.06474 * 21 20 19 41 41 H 1.09001 * 109.22029 * 306.41420 * 21 20 19 42 42 H 1.09007 * 109.68899 * 155.30403 * 22 21 20 43 43 H 1.08998 * 109.82911 * 34.74740 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5458 4.4124 10 1 1.3430 -0.9492 5.1120 11 1 2.4858 -2.5662 3.7120 12 7 2.0184 -0.6906 -1.1961 13 6 1.6646 -2.0931 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0865 1.1255 -1.8912 16 6 3.2961 -0.7460 -3.3135 17 7 4.1103 0.1747 -4.1107 18 6 5.5595 0.2657 -3.8694 19 6 6.2929 -0.3903 -5.0409 20 6 6.5100 0.6030 -6.1677 21 6 5.2260 1.0509 -6.8422 22 6 4.3668 1.8754 -5.8844 23 6 3.5337 0.9248 -5.0507 24 8 2.3381 0.8455 -5.2381 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7093 1.1618 3.4844 29 1 2.4158 -2.7376 -0.9716 30 1 0.6905 -2.3002 -0.9847 31 1 1.6239 -2.2851 -2.5002 32 1 2.4486 -1.0890 -3.9069 33 1 3.9018 -1.6021 -3.0164 34 1 5.8095 -0.2537 -2.9444 35 1 5.8527 1.3128 -3.7946 36 1 5.7013 -1.2279 -5.4104 37 1 7.2593 -0.7592 -4.6972 38 1 7.0161 1.4805 -5.7654 39 1 7.1547 0.1436 -6.9170 40 1 5.4712 1.6589 -7.7129 41 1 4.6650 0.1736 -7.1643 42 1 3.7109 2.5341 -6.4539 43 1 5.0066 2.4700 -5.2324 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331862952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:59 Heat of formation + Delta-G solvation = -73.341303 kcal Electronic energy + Delta-G solvation = -23358.774868 eV Core-core repulsion = 20017.927341 eV Total energy + Delta-G solvation = -3340.847527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47302 -38.69046 -36.68198 -35.39538 -34.42577 -32.83896 -31.16444 -29.94107 -28.23976 -26.14281 -25.69949 -25.16699 -23.93018 -21.36646 -20.73129 -19.03085 -18.11214 -17.22523 -16.84386 -16.58369 -16.00127 -15.38970 -14.80177 -14.60328 -14.29844 -14.10267 -14.08009 -13.59508 -13.49450 -12.94334 -12.68482 -12.52369 -12.41215 -12.20287 -11.79153 -11.57852 -11.51769 -11.37079 -11.05350 -11.01642 -10.96165 -10.82065 -10.79786 -10.66342 -10.22475 -10.14717 -9.60973 -9.34957 -9.12247 -8.45959 -8.32021 -7.55324 -6.05481 -4.13811 2.78245 3.05213 3.27003 3.33092 3.34725 3.41861 4.07021 4.38003 4.41142 4.57695 4.64727 4.66862 5.04872 5.19216 5.20765 5.25360 5.28540 5.35487 5.37311 5.49842 5.56318 5.66657 5.72219 5.75918 5.80413 5.86092 5.98584 6.07401 6.07954 6.30390 6.45290 6.81197 6.88196 7.10320 7.46932 7.50996 7.55354 7.73615 8.04360 8.21913 8.33859 8.56460 8.85293 9.08464 9.52662 10.99741 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028338 B = 0.004146 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.842468 B = 6752.130222 C = 7090.316009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.062 0.938 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.593 5.593 13 C 0.085 3.915 14 C 0.489 3.511 15 O -0.546 6.546 16 C 0.093 3.907 17 N -0.587 5.587 18 C 0.114 3.886 19 C -0.140 4.140 20 C -0.122 4.122 21 C -0.112 4.112 22 C -0.136 4.136 23 C 0.521 3.479 24 O -0.550 6.550 25 H 0.093 0.907 26 H 0.012 0.988 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.417 -4.417 -16.082 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.325 5.325 13 C -0.059 4.059 14 C 0.275 3.725 15 O -0.424 6.424 16 C -0.033 4.033 17 N -0.319 5.319 18 C -0.009 4.009 19 C -0.178 4.178 20 C -0.159 4.159 21 C -0.149 4.149 22 C -0.176 4.176 23 C 0.309 3.691 24 O -0.427 6.427 25 H 0.112 0.888 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.843 -3.728 -15.918 19.083 hybrid contribution 0.300 -0.587 1.073 1.259 sum 10.142 -4.315 -14.845 18.489 Atomic orbital electron populations 1.22090 0.98264 0.99338 1.00878 1.18921 0.90880 0.94474 0.79905 0.92035 1.21311 1.31773 1.12922 0.90298 0.92331 1.24905 0.94974 0.95006 0.98959 1.69895 1.36344 1.22642 1.23702 0.86495 0.78611 0.79834 0.82419 1.20664 1.21129 1.19933 1.48230 1.48966 1.11675 1.23622 1.21577 1.01823 0.83198 0.99278 1.20787 0.79655 0.87592 0.84514 1.90635 1.58320 1.16902 1.76534 1.21457 0.97251 0.92248 0.92365 1.47380 1.08343 1.41284 1.34881 1.21812 0.78718 1.02120 0.98249 1.21833 1.01076 0.99013 0.95905 1.21182 0.97380 0.99501 0.97858 1.21176 0.95876 1.00007 0.97888 1.21934 0.99577 0.97707 0.98426 1.20455 0.88072 0.80622 0.79945 1.90705 1.15436 1.67267 1.69332 0.88838 0.96920 0.95108 0.92709 0.93221 0.90724 0.93019 0.87524 0.88182 0.89538 0.90312 0.91193 0.90505 0.91692 0.91780 0.90841 0.91625 0.88640 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 8.95 37.16 0.33 -3.34 16 2 C 0.26 6.79 2.63 -69.08 -0.18 6.61 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.29 8.37 -34.44 -0.29 -14.58 16 5 H 0.06 1.56 7.65 -52.48 -0.40 1.16 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.59 -13.01 2.75 -175.27 -0.48 -13.49 16 13 C 0.09 1.45 9.48 59.84 0.57 2.01 16 14 C 0.49 10.49 7.74 -10.99 -0.09 10.41 16 15 O -0.55 -13.95 15.76 5.55 0.09 -13.86 16 16 C 0.09 1.47 4.35 -5.19 -0.02 1.45 16 17 N -0.59 -8.66 1.94 -174.61 -0.34 -8.99 16 18 C 0.11 1.26 5.88 -3.67 -0.02 1.24 16 19 C -0.14 -1.11 5.73 -27.36 -0.16 -1.27 16 20 C -0.12 -0.87 5.28 -27.97 -0.15 -1.01 16 21 C -0.11 -0.94 5.64 -27.44 -0.15 -1.10 16 22 C -0.14 -1.55 5.56 -27.62 -0.15 -1.70 16 23 C 0.52 8.34 6.78 -11.26 -0.08 8.26 16 24 O -0.55 -11.14 16.60 5.56 0.09 -11.05 16 25 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.29 6.43 -51.93 -0.33 0.96 16 31 H 0.05 0.70 6.44 -51.93 -0.33 0.36 16 32 H 0.11 1.67 6.64 -51.93 -0.34 1.32 16 33 H 0.10 1.24 7.99 -51.93 -0.42 0.82 16 34 H 0.09 0.95 7.92 -51.93 -0.41 0.54 16 35 H 0.08 0.86 6.71 -51.93 -0.35 0.51 16 36 H 0.07 0.59 8.05 -51.93 -0.42 0.18 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.43 7.89 -51.93 -0.41 0.02 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.61 7.86 -51.93 -0.41 0.21 16 42 H 0.10 1.07 8.13 -51.93 -0.42 0.64 16 43 H 0.09 0.94 6.79 -51.93 -0.35 0.59 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -34.90 338.10 -7.29 -42.20 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.87 Total: 0.26 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -0.48 Total: 8.64 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.19 Total: -47.34 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: 0.18 Total: -24.91 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.90 -7.29 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331862952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.145 kcal (2) G-P(sol) polarization free energy of solvation -34.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds