Wall clock time and date at job start Tue Mar 31 2020 05:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46507 * 2 1 4 4 C 1.50696 * 109.47139 * 119.99646 * 2 1 3 5 5 H 1.08004 * 119.99880 * 119.99936 * 4 2 1 6 6 C 1.37871 * 120.00325 * 300.00661 * 4 2 1 7 7 N 1.31519 * 119.99897 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00255 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47053 * 89.99740 * 8 6 4 10 10 H 1.48502 * 109.46980 * 209.99714 * 8 6 4 11 11 H 1.48502 * 109.47016 * 329.99518 * 8 6 4 12 12 N 1.46499 * 109.47448 * 240.00074 * 2 1 3 13 13 C 1.46496 * 119.99927 * 299.99833 * 12 2 1 14 14 C 1.34775 * 120.00050 * 119.99480 * 12 2 1 15 15 O 1.21285 * 119.99949 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00239 * 179.97438 * 14 12 2 17 17 N 1.46500 * 109.47216 * 180.02562 * 16 14 12 18 18 C 1.47190 * 119.79088 * 89.99992 * 17 16 14 19 19 C 1.52991 * 108.66335 * 108.04122 * 18 17 16 20 20 C 1.51772 * 110.88240 * 86.46983 * 19 18 17 21 21 C 1.51794 * 113.70513 * 293.06474 * 20 19 18 22 22 C 1.52820 * 110.87643 * 66.88363 * 21 20 19 23 23 C 1.33371 * 119.78169 * 269.97830 * 17 16 14 24 24 O 1.21280 * 119.89329 * 0.27972 * 23 17 16 25 25 H 1.08996 * 109.47841 * 299.99778 * 1 2 3 26 26 H 1.09001 * 109.47149 * 60.00528 * 1 2 3 27 27 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 28 28 H 0.97009 * 119.99685 * 180.02562 * 7 6 4 29 29 H 1.08994 * 109.47313 * 270.00158 * 13 12 2 30 30 H 1.09004 * 109.47137 * 30.00199 * 13 12 2 31 31 H 1.09004 * 109.46849 * 149.99624 * 13 12 2 32 32 H 1.09002 * 109.46665 * 60.00202 * 16 14 12 33 33 H 1.08996 * 109.46890 * 300.00600 * 16 14 12 34 34 H 1.09000 * 109.60390 * 348.29052 * 18 17 16 35 35 H 1.08995 * 109.60592 * 227.79274 * 18 17 16 36 36 H 1.09006 * 109.19526 * 326.10350 * 19 18 17 37 37 H 1.08998 * 109.19018 * 206.83312 * 19 18 17 38 38 H 1.09002 * 108.61650 * 54.11569 * 20 19 18 39 39 H 1.08998 * 108.61318 * 172.01884 * 20 19 18 40 40 H 1.08996 * 109.22574 * 187.06474 * 21 20 19 41 41 H 1.09001 * 109.22029 * 306.41420 * 21 20 19 42 42 H 1.09007 * 109.68899 * 155.30403 * 22 21 20 43 43 H 1.08998 * 109.82911 * 34.74740 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5458 4.4124 10 1 1.3430 -0.9492 5.1120 11 1 2.4858 -2.5662 3.7120 12 7 2.0184 -0.6906 -1.1961 13 6 1.6646 -2.0931 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0865 1.1255 -1.8912 16 6 3.2961 -0.7460 -3.3135 17 7 4.1103 0.1747 -4.1107 18 6 5.5595 0.2657 -3.8694 19 6 6.2929 -0.3903 -5.0409 20 6 6.5100 0.6030 -6.1677 21 6 5.2260 1.0509 -6.8422 22 6 4.3668 1.8754 -5.8844 23 6 3.5337 0.9248 -5.0507 24 8 2.3381 0.8455 -5.2381 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7093 1.1618 3.4844 29 1 2.4158 -2.7376 -0.9716 30 1 0.6905 -2.3002 -0.9847 31 1 1.6239 -2.2851 -2.5002 32 1 2.4486 -1.0890 -3.9069 33 1 3.9018 -1.6021 -3.0164 34 1 5.8095 -0.2537 -2.9444 35 1 5.8527 1.3128 -3.7946 36 1 5.7013 -1.2279 -5.4104 37 1 7.2593 -0.7592 -4.6972 38 1 7.0161 1.4805 -5.7654 39 1 7.1547 0.1436 -6.9170 40 1 5.4712 1.6589 -7.7129 41 1 4.6650 0.1736 -7.1643 42 1 3.7109 2.5341 -6.4539 43 1 5.0066 2.4700 -5.2324 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331862952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:58 Heat of formation + Delta-G solvation = -96.280012 kcal Electronic energy + Delta-G solvation = -23359.769565 eV Core-core repulsion = 20017.927341 eV Total energy + Delta-G solvation = -3341.842224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.69816 -40.30344 -37.71920 -37.17617 -35.55803 -34.79596 -32.05903 -31.74603 -29.53043 -27.63327 -27.30941 -26.77949 -24.84805 -23.10402 -21.46990 -20.46697 -19.52952 -18.56392 -18.30423 -18.18377 -17.50738 -17.05953 -16.27286 -16.19338 -15.61157 -15.21191 -15.01463 -14.73064 -14.50776 -14.37434 -14.23917 -14.08896 -13.55721 -13.48293 -13.21119 -13.13565 -12.93761 -12.88907 -12.69801 -12.62607 -12.37379 -12.19776 -12.10366 -11.72329 -11.60176 -11.46471 -11.21867 -10.98089 -10.77394 -10.54055 -9.69464 -9.34953 -8.14960 -6.32572 1.41700 1.42732 1.52795 1.54830 1.75933 1.94415 2.36184 2.56553 3.12832 3.48887 3.71929 3.86874 3.91806 3.96932 4.14978 4.24151 4.34273 4.42101 4.49297 4.54186 4.61269 4.66504 4.77106 4.83101 4.83519 4.92657 5.00234 5.03447 5.07507 5.13826 5.25831 5.29662 5.39261 5.44267 5.48801 5.58933 5.65541 6.00411 6.13727 6.37852 6.75567 6.79084 7.13694 7.30263 7.45856 8.89759 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028338 B = 0.004146 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.842468 B = 6752.130222 C = 7090.316009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.003 0.997 4 C -0.535 4.535 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.969 3.031 9 H -0.281 1.281 10 H -0.282 1.282 11 H -0.258 1.258 12 N -0.601 5.601 13 C 0.080 3.920 14 C 0.477 3.523 15 O -0.599 6.599 16 C 0.104 3.896 17 N -0.588 5.588 18 C 0.106 3.894 19 C -0.130 4.130 20 C -0.121 4.121 21 C -0.105 4.105 22 C -0.132 4.132 23 C 0.508 3.492 24 O -0.604 6.604 25 H 0.068 0.932 26 H 0.011 0.989 27 H 0.050 0.950 28 H 0.264 0.736 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.143 0.857 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.602 -6.735 -17.033 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.021 0.979 4 C -0.573 4.573 5 H 0.084 0.916 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.794 3.206 9 H -0.207 1.207 10 H -0.208 1.208 11 H -0.182 1.182 12 N -0.332 5.332 13 C -0.062 4.062 14 C 0.265 3.735 15 O -0.481 6.481 16 C -0.023 4.023 17 N -0.318 5.318 18 C -0.016 4.016 19 C -0.168 4.168 20 C -0.158 4.158 21 C -0.143 4.143 22 C -0.172 4.172 23 C 0.298 3.702 24 O -0.486 6.486 25 H 0.087 0.913 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.160 0.840 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.066 -6.096 -16.890 21.634 hybrid contribution -0.390 0.188 1.366 1.433 sum 11.677 -5.908 -15.524 20.304 Atomic orbital electron populations 1.21894 0.97603 1.00135 0.99567 1.18507 0.91349 0.92130 0.82033 0.97860 1.21556 1.31889 1.13069 0.90831 0.91647 1.25814 0.95031 0.95650 1.02257 1.70053 1.37421 1.24109 1.24425 0.85389 0.77715 0.79282 0.78219 1.20683 1.20781 1.18228 1.48260 1.48918 1.13592 1.22427 1.21861 1.01973 0.80283 1.02060 1.21875 0.78740 0.87224 0.85650 1.90599 1.60192 1.19425 1.77922 1.21454 0.98382 0.92809 0.89623 1.47637 1.09774 1.40608 1.33813 1.22112 0.76811 1.02637 1.00018 1.21772 1.01537 0.98768 0.94729 1.21200 0.96809 0.99822 0.98017 1.21187 0.95797 0.99451 0.97845 1.21993 0.99485 0.97165 0.98518 1.21355 0.87878 0.80768 0.80224 1.90665 1.17818 1.69024 1.71086 0.91304 0.97016 0.93082 0.92688 0.91469 0.91235 0.89182 0.87106 0.83978 0.89484 0.90480 0.91417 0.88112 0.90816 0.89613 0.88618 0.92572 0.88943 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.85 8.95 71.98 0.64 -6.21 16 2 C 0.26 14.23 2.63 44.24 0.12 14.35 16 3 H 0.00 0.22 6.90 -2.39 -0.02 0.21 16 4 C -0.53 -29.39 8.37 25.60 0.21 -29.18 16 5 H 0.07 3.42 7.65 -2.91 -0.02 3.40 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -54.33 11.32 21.45 0.24 -54.08 16 8 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 12 N -0.60 -26.46 2.75 -826.81 -2.28 -28.73 16 13 C 0.08 2.56 9.48 127.77 1.21 3.77 16 14 C 0.48 20.75 7.74 87.66 0.68 21.43 16 15 O -0.60 -32.08 15.76 -3.04 -0.05 -32.13 16 16 C 0.10 3.15 4.35 85.63 0.37 3.52 16 17 N -0.59 -16.86 1.94 -825.50 -1.60 -18.46 16 18 C 0.11 2.16 5.88 86.24 0.51 2.66 16 19 C -0.13 -1.64 5.73 30.19 0.17 -1.46 16 20 C -0.12 -1.29 5.28 29.79 0.16 -1.14 16 21 C -0.11 -1.52 5.64 30.14 0.17 -1.35 16 22 C -0.13 -2.89 5.56 30.02 0.17 -2.72 16 23 C 0.51 16.28 6.78 88.11 0.60 16.88 16 24 O -0.60 -25.18 16.60 -3.03 -0.05 -25.23 16 25 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 26 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 2.35 6.66 -2.38 -0.02 2.33 16 28 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 2.29 6.43 -2.39 -0.02 2.27 16 31 H 0.09 2.17 6.44 -2.38 -0.02 2.16 16 32 H 0.11 3.31 6.64 -2.39 -0.02 3.30 16 33 H 0.14 3.07 7.99 -2.39 -0.02 3.05 16 34 H 0.09 1.76 7.92 -2.39 -0.02 1.74 16 35 H 0.08 1.59 6.71 -2.39 -0.02 1.58 16 36 H 0.07 0.92 8.05 -2.38 -0.02 0.91 16 37 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.70 7.89 -2.39 -0.02 0.68 16 39 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 0.94 7.86 -2.39 -0.02 0.92 16 42 H 0.09 2.05 8.13 -2.38 -0.02 2.03 16 43 H 0.10 1.98 6.79 -2.39 -0.02 1.97 16 Total: -1.00 -80.79 338.10 4.74 -76.05 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.99 Total: 15.83 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 5.46 Total: 21.66 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -3.64 Total: -101.28 kcal Atomic # 8 Polarization: -57.26 SS G_CDS: -0.10 Total: -57.35 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -80.79 4.74 -76.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331862952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.231 kcal (2) G-P(sol) polarization free energy of solvation -80.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds