Wall clock time and date at job start Tue Mar 31 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 120.00516 * 2 1 4 4 N 1.34777 * 119.99824 * 179.97438 * 2 1 3 5 5 C 1.46504 * 120.00158 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47434 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.46938 * 59.99939 * 5 4 2 8 8 C 1.52999 * 109.47200 * 65.00110 * 7 5 4 9 9 C 1.53778 * 113.61540 * 272.49433 * 8 7 5 10 10 C 1.53778 * 87.08290 * 220.02119 * 9 8 7 11 11 C 1.53781 * 113.61264 * 174.99747 * 8 7 5 12 12 C 1.50706 * 109.47162 * 300.00251 * 5 4 2 13 13 O 1.21281 * 119.99912 * 19.99727 * 12 5 4 14 14 N 1.34767 * 119.99889 * 200.00133 * 12 5 4 15 15 C 1.46506 * 120.00003 * 179.97438 * 14 12 5 16 16 H 1.09004 * 109.47073 * 34.99607 * 15 14 12 17 17 C 1.53002 * 109.47035 * 274.99925 * 15 14 12 18 18 C 1.50703 * 109.47289 * 154.99668 * 15 14 12 19 19 H 1.07994 * 119.99399 * 0.02562 * 18 15 14 20 20 C 1.37874 * 119.99789 * 179.97438 * 18 15 14 21 21 N 1.31518 * 120.00144 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99733 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.46762 * 60.00562 * 22 20 18 24 24 H 1.48506 * 109.46725 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47116 * 300.00217 * 22 20 18 26 26 H 1.09002 * 109.47298 * 240.00141 * 1 2 3 27 27 H 1.09000 * 109.47100 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47360 * 120.00023 * 1 2 3 29 29 H 0.96994 * 120.00373 * 359.97438 * 4 2 1 30 30 H 1.08999 * 109.47097 * 185.00206 * 7 5 4 31 31 H 1.09008 * 109.47308 * 305.00000 * 7 5 4 32 32 H 1.08998 * 112.84755 * 43.80604 * 8 7 5 33 33 H 1.08997 * 113.61539 * 334.56890 * 9 8 7 34 34 H 1.09009 * 113.61126 * 105.47127 * 9 8 7 35 35 H 1.09009 * 113.61018 * 270.88534 * 10 9 8 36 36 H 1.08999 * 113.61639 * 139.98318 * 10 9 8 37 37 H 1.09000 * 113.61520 * 254.52592 * 11 8 7 38 38 H 1.08998 * 113.61576 * 25.35161 * 11 8 7 39 39 H 0.96996 * 120.00319 * 359.97438 * 14 12 5 40 40 H 1.09004 * 109.46930 * 299.99770 * 17 15 14 41 41 H 1.09004 * 109.47059 * 59.99372 * 17 15 14 42 42 H 1.08992 * 109.47060 * 179.97438 * 17 15 14 43 43 H 0.96997 * 119.99752 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 1 4.0092 -2.1950 0.0019 7 6 4.1553 -0.4458 1.2504 8 6 3.7501 -1.2356 2.4965 9 6 2.3567 -0.8677 3.0329 10 6 2.9577 -0.9762 4.4442 11 6 4.3192 -0.6588 3.8035 12 6 4.1487 -0.4571 -1.2294 13 8 3.4206 0.3042 -1.8302 14 7 5.4075 -0.6682 -1.6620 15 6 5.8962 0.0218 -2.8585 16 1 5.4615 1.0203 -2.9051 17 6 5.4919 -0.7692 -4.1042 18 6 7.3981 0.1301 -2.7977 19 1 7.9348 -0.2748 -1.9526 20 6 8.0868 0.7453 -3.8215 21 7 7.4331 1.2380 -4.8508 22 14 9.9484 0.8802 -3.7457 23 1 10.5410 -0.4798 -3.6813 24 1 10.4437 1.5795 -4.9587 25 1 10.3403 1.6488 -2.5371 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5138 -0.8899 29 1 1.6959 -2.0072 0.0013 30 1 5.2417 -0.3676 1.2071 31 1 3.7207 0.5529 1.2959 32 1 3.9082 -2.3086 2.3874 33 1 2.0400 0.1415 2.7697 34 1 1.5956 -1.6194 2.8234 35 1 2.8978 -1.9787 4.8683 36 1 2.6067 -0.2042 5.1289 37 1 5.1424 -1.2420 4.2161 38 1 4.5403 0.4071 3.7505 39 1 5.9899 -1.2768 -1.1813 40 1 5.9266 -1.7677 -4.0575 41 1 4.4056 -0.8476 -4.1481 42 1 5.8551 -0.2557 -4.9943 43 1 7.9177 1.6711 -5.5709 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331988086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:41 Heat of formation + Delta-G solvation = -64.570747 kcal Electronic energy + Delta-G solvation = -23301.182439 eV Core-core repulsion = 19960.715232 eV Total energy + Delta-G solvation = -3340.467207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.27674 -38.51820 -38.00344 -34.84131 -34.27859 -32.34960 -31.41731 -29.06560 -28.72470 -25.68393 -25.56211 -25.16497 -22.33222 -21.40694 -20.11376 -19.38920 -19.06879 -17.21539 -17.08000 -15.99839 -15.67635 -15.27915 -14.86107 -14.73706 -14.59262 -13.93698 -13.83864 -13.44663 -12.96285 -12.80288 -12.58168 -12.47881 -12.29457 -12.24800 -11.96630 -11.66868 -11.35172 -11.21007 -11.03103 -10.89541 -10.68161 -10.60372 -10.30184 -10.27008 -10.19551 -10.17981 -9.47479 -9.23427 -8.98986 -8.50444 -8.30783 -7.76734 -6.06623 -4.15749 3.04322 3.28728 3.33835 3.35039 3.36636 3.60391 4.20946 4.42098 4.56839 4.61314 4.71767 4.82022 4.98997 5.20285 5.25233 5.32211 5.37446 5.43123 5.46487 5.60282 5.63897 5.72906 5.79411 5.82500 5.84262 5.92124 5.99437 6.24722 6.30546 6.54434 6.70723 6.88118 7.01298 7.21744 7.56321 7.64366 7.75825 7.78249 7.99103 8.21555 8.65315 8.77465 8.87168 9.28029 9.52335 10.99334 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.004563 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.230815 B = 6134.847254 C = 7106.869818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.514 3.486 3 O -0.510 6.510 4 N -0.720 5.720 5 C 0.135 3.865 6 H 0.098 0.902 7 C -0.123 4.123 8 C -0.103 4.103 9 C -0.131 4.131 10 C -0.145 4.145 11 C -0.137 4.137 12 C 0.489 3.511 13 O -0.526 6.526 14 N -0.712 5.712 15 C 0.267 3.733 16 H 0.047 0.953 17 C -0.145 4.145 18 C -0.532 4.532 19 H 0.060 0.940 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.901 3.099 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.397 0.603 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.385 0.615 40 H 0.025 0.975 41 H 0.012 0.988 42 H 0.089 0.911 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.793 -9.273 15.252 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.301 3.699 3 O -0.383 6.383 4 N -0.373 5.373 5 C 0.026 3.974 6 H 0.116 0.884 7 C -0.162 4.162 8 C -0.121 4.121 9 C -0.168 4.168 10 C -0.182 4.182 11 C -0.175 4.175 12 C 0.271 3.729 13 O -0.401 6.401 14 N -0.362 5.362 15 C 0.165 3.835 16 H 0.065 0.935 17 C -0.203 4.203 18 C -0.570 4.570 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.522 5.522 22 Si 0.729 3.271 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.230 0.770 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.217 0.783 40 H 0.044 0.956 41 H 0.031 0.969 42 H 0.107 0.893 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.850 -7.793 14.595 19.786 hybrid contribution 1.125 -0.765 0.098 1.364 sum -9.725 -8.558 14.693 19.588 Atomic orbital electron populations 1.21896 0.92768 1.05061 1.03463 1.20462 0.89903 0.83766 0.75798 1.90737 1.70087 1.31131 1.46338 1.45576 1.05582 1.08680 1.77452 1.20910 0.81474 1.00319 0.94699 0.88382 1.21931 1.01525 1.01195 0.91517 1.22488 0.96486 0.99411 0.93713 1.22942 0.96500 1.01739 0.95613 1.22825 0.97265 1.01343 0.96798 1.22928 0.96733 1.01476 0.96339 1.20628 0.83204 0.83304 0.85742 1.90696 1.56003 1.35900 1.57536 1.46475 1.12298 1.46733 1.30652 1.18678 0.93385 0.92142 0.79322 0.93529 1.22060 0.96429 0.99056 1.02786 1.21187 0.90909 1.38923 1.06016 0.92198 1.24889 0.98760 0.94970 0.95112 1.69900 1.35625 1.37599 1.09047 0.86519 0.84884 0.78228 0.77512 1.20202 1.21166 1.20193 0.90128 0.89381 0.89873 0.76955 0.90540 0.88859 0.89548 0.90213 0.92034 0.90549 0.91850 0.91692 0.90079 0.78285 0.95611 0.96894 0.89268 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.32 36.00 0.37 -1.39 16 2 C 0.51 7.71 5.85 -10.99 -0.06 7.65 16 3 O -0.51 -10.44 12.94 -17.93 -0.23 -10.67 16 4 N -0.72 -9.01 4.34 -54.93 -0.24 -9.25 16 5 C 0.14 1.93 3.00 -69.08 -0.21 1.73 16 6 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 7 C -0.12 -1.69 4.41 -26.73 -0.12 -1.81 16 8 C -0.10 -1.06 3.52 -89.81 -0.32 -1.37 16 9 C -0.13 -1.27 6.39 -25.92 -0.17 -1.44 16 10 C -0.14 -1.27 8.08 -25.92 -0.21 -1.48 16 11 C -0.14 -1.36 7.64 -25.92 -0.20 -1.55 16 12 C 0.49 10.07 6.78 -10.99 -0.07 9.99 16 13 O -0.53 -13.33 13.34 -17.93 -0.24 -13.57 16 14 N -0.71 -15.19 5.07 -54.92 -0.28 -15.47 16 15 C 0.27 7.02 2.56 -69.08 -0.18 6.85 16 16 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 17 C -0.14 -3.70 9.26 37.16 0.34 -3.36 16 18 C -0.53 -14.43 8.73 -34.44 -0.30 -14.73 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 20 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 21 N -0.88 -25.57 11.32 55.43 0.63 -24.94 16 22 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.40 3.44 8.83 -40.82 -0.36 3.08 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 1.60 5.75 -51.92 -0.30 1.30 16 32 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 33 H 0.08 0.94 7.62 -51.93 -0.40 0.54 16 34 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 35 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.39 7.01 8.54 -40.82 -0.35 6.66 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -34.93 345.92 -8.52 -43.45 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.14 Total: 8.42 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.21 Total: 0.80 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.11 Total: -49.66 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.47 Total: -24.24 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.93 -8.52 -43.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331988086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.118 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds