Wall clock time and date at job start Tue Mar 31 2020 05:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21277 * 119.99973 * 2 1 4 4 N 1.34778 * 119.99675 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99557 * 179.97438 * 4 2 1 6 6 H 1.09003 * 109.46405 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47022 * 60.00535 * 5 4 2 8 8 C 1.52996 * 109.47202 * 64.99478 * 7 5 4 9 9 C 1.53781 * 113.61561 * 272.49919 * 8 7 5 10 10 C 1.53784 * 87.07712 * 220.01962 * 9 8 7 11 11 C 1.53774 * 87.08512 * 25.43141 * 10 9 8 12 12 C 1.50700 * 109.47299 * 300.00109 * 5 4 2 13 13 O 1.21283 * 119.99803 * 20.00031 * 12 5 4 14 14 N 1.34777 * 119.99675 * 200.27906 * 12 5 4 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 5 16 16 H 1.09001 * 109.47884 * 324.99780 * 15 14 12 17 17 C 1.53008 * 109.47335 * 84.99977 * 15 14 12 18 18 C 1.50701 * 109.47133 * 204.99448 * 15 14 12 19 19 H 1.08002 * 120.00022 * 0.02562 * 18 15 14 20 20 C 1.37879 * 120.00302 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99643 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 120.00038 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47579 * 59.99607 * 22 20 18 24 24 H 1.48496 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.46945 * 299.99598 * 22 20 18 26 26 H 1.09001 * 109.47143 * 269.99864 * 1 2 3 27 27 H 1.09004 * 109.47186 * 29.99367 * 1 2 3 28 28 H 1.08994 * 109.47428 * 149.99889 * 1 2 3 29 29 H 0.96995 * 120.00076 * 0.02562 * 4 2 1 30 30 H 1.08993 * 109.46630 * 184.99876 * 7 5 4 31 31 H 1.09001 * 109.46418 * 304.99573 * 7 5 4 32 32 H 1.09003 * 112.85033 * 43.80689 * 8 7 5 33 33 H 1.08998 * 113.61214 * 334.56664 * 9 8 7 34 34 H 1.08998 * 113.61697 * 105.47494 * 9 8 7 35 35 H 1.08994 * 113.61681 * 270.87846 * 10 9 8 36 36 H 1.09005 * 113.61155 * 139.98131 * 10 9 8 37 37 H 1.08994 * 113.61918 * 220.02001 * 11 10 9 38 38 H 1.09005 * 113.69090 * 89.12358 * 11 10 9 39 39 H 0.97000 * 119.99894 * 359.71837 * 14 12 5 40 40 H 1.08998 * 109.46811 * 299.99762 * 17 15 14 41 41 H 1.08994 * 109.47201 * 59.99659 * 17 15 14 42 42 H 1.08995 * 109.47273 * 180.02562 * 17 15 14 43 43 H 0.96996 * 119.99343 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0091 -2.1949 -0.0019 7 6 4.1564 -0.4463 1.2482 8 6 3.7520 -1.2368 2.4942 9 6 2.3589 -0.8692 3.0318 10 6 2.9611 -0.9785 4.4426 11 6 4.3220 -0.6607 3.8011 12 6 4.1478 -0.4565 -1.2316 13 8 3.4191 0.3051 -1.8315 14 7 5.4045 -0.6716 -1.6685 15 6 5.8904 0.0147 -2.8680 16 1 5.0735 0.1212 -3.5818 17 6 6.4171 1.3994 -2.4854 18 6 7.0011 -0.7902 -3.4922 19 1 7.3135 -1.7203 -3.0407 20 6 7.6185 -0.3394 -4.6396 21 7 7.2377 0.7929 -5.1897 22 14 8.9947 -1.3376 -5.4136 23 1 8.4830 -2.6811 -5.7857 24 1 9.4881 -0.6412 -6.6288 25 1 10.1075 -1.4836 -4.4411 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8901 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6959 -2.0072 -0.0013 30 1 5.2426 -0.3681 1.2041 31 1 3.7217 0.5522 1.2944 32 1 3.9100 -2.3097 2.3845 33 1 2.0421 0.1402 2.7693 34 1 1.5978 -1.6208 2.8225 35 1 2.9015 -1.9809 4.8663 36 1 2.6105 -0.2067 5.1279 37 1 5.1456 -1.2440 4.2127 38 1 4.5432 0.4054 3.7484 39 1 5.9872 -1.2807 -1.1885 40 1 5.6138 1.9816 -2.0340 41 1 7.2340 1.2930 -1.7718 42 1 6.7782 1.9102 -3.3780 43 1 7.6723 1.1101 -5.9968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331988110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:43 Heat of formation + Delta-G solvation = -64.448697 kcal Electronic energy + Delta-G solvation = -23308.154680 eV Core-core repulsion = 19967.692765 eV Total energy + Delta-G solvation = -3340.461915 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28332 -38.52972 -38.00351 -34.83941 -34.28041 -32.35521 -31.42421 -29.05201 -28.73840 -25.69362 -25.55961 -25.15876 -22.31986 -21.43155 -20.11336 -19.40838 -19.06152 -17.21651 -17.08702 -15.99888 -15.67837 -15.30920 -14.86855 -14.74715 -14.57860 -14.07857 -13.62600 -13.50767 -12.98814 -12.84735 -12.53380 -12.49103 -12.36008 -12.20347 -11.97866 -11.62991 -11.38562 -11.21132 -11.04380 -10.91191 -10.65159 -10.59469 -10.32996 -10.25373 -10.21037 -10.17243 -9.48179 -9.23822 -8.98172 -8.52503 -8.27924 -7.77342 -6.07172 -4.16648 3.03098 3.27551 3.32697 3.33730 3.37561 3.61152 4.19075 4.42258 4.55334 4.59696 4.70317 4.80500 4.99153 5.20225 5.24553 5.29389 5.37482 5.42383 5.45775 5.59195 5.63105 5.71016 5.78029 5.80458 5.83311 5.91464 5.97817 6.22975 6.28308 6.52578 6.70072 6.92371 7.09077 7.25097 7.57293 7.65097 7.76323 7.78092 7.99803 8.22509 8.64838 8.77137 8.86750 9.27942 9.51583 10.98631 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.004305 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.837975 B = 6502.542053 C = 7190.498753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.515 3.485 3 O -0.511 6.511 4 N -0.719 5.719 5 C 0.134 3.866 6 H 0.099 0.901 7 C -0.122 4.122 8 C -0.103 4.103 9 C -0.131 4.131 10 C -0.145 4.145 11 C -0.137 4.137 12 C 0.489 3.511 13 O -0.525 6.525 14 N -0.712 5.712 15 C 0.268 3.732 16 H 0.045 0.955 17 C -0.146 4.146 18 C -0.533 4.533 19 H 0.060 0.940 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.397 0.603 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.385 0.615 40 H 0.015 0.985 41 H 0.025 0.975 42 H 0.088 0.912 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.001 -7.372 16.694 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.301 3.699 3 O -0.385 6.385 4 N -0.372 5.372 5 C 0.025 3.975 6 H 0.117 0.883 7 C -0.161 4.161 8 C -0.121 4.121 9 C -0.168 4.168 10 C -0.182 4.182 11 C -0.175 4.175 12 C 0.271 3.729 13 O -0.401 6.401 14 N -0.362 5.362 15 C 0.166 3.834 16 H 0.063 0.937 17 C -0.204 4.204 18 C -0.571 4.571 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.729 3.271 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.231 0.769 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.217 0.783 40 H 0.034 0.966 41 H 0.044 0.956 42 H 0.106 0.894 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.050 -5.874 16.053 19.829 hybrid contribution 0.895 -1.318 -0.313 1.624 sum -9.155 -7.192 15.740 19.578 Atomic orbital electron populations 1.21860 0.92777 1.04586 1.03806 1.20462 0.89897 0.83765 0.75739 1.90728 1.70042 1.31140 1.46558 1.45616 1.05591 1.08692 1.77294 1.20916 0.81520 1.00381 0.94658 0.88326 1.21921 1.01390 1.01194 0.91581 1.22490 0.96499 0.99450 0.93672 1.22941 0.96527 1.01733 0.95599 1.22824 0.97243 1.01365 0.96802 1.22927 0.96759 1.01433 0.96363 1.20626 0.83092 0.83308 0.85857 1.90697 1.56099 1.36029 1.57296 1.46481 1.12626 1.46635 1.30430 1.18665 0.94370 0.89271 0.81092 0.93675 1.22056 0.97862 0.99055 1.01474 1.21193 1.18536 1.07120 1.10296 0.92218 1.24895 0.97134 0.95088 0.96625 1.69908 1.41607 1.20100 1.20460 0.86521 0.81937 0.80027 0.78653 1.20234 1.21162 1.20186 0.89604 0.89208 0.90718 0.76909 0.90672 0.88882 0.89511 0.90244 0.91981 0.90527 0.91851 0.91689 0.90115 0.78279 0.96563 0.95632 0.89370 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 10.30 36.01 0.37 -1.38 16 2 C 0.51 7.70 5.85 -10.98 -0.06 7.64 16 3 O -0.51 -10.37 12.96 -17.93 -0.23 -10.61 16 4 N -0.72 -9.04 4.34 -54.93 -0.24 -9.28 16 5 C 0.13 1.92 3.00 -69.08 -0.21 1.72 16 6 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 7 C -0.12 -1.65 4.41 -26.73 -0.12 -1.77 16 8 C -0.10 -1.04 3.52 -89.81 -0.32 -1.35 16 9 C -0.13 -1.25 6.39 -25.92 -0.17 -1.42 16 10 C -0.14 -1.25 8.08 -25.92 -0.21 -1.46 16 11 C -0.14 -1.32 7.64 -25.92 -0.20 -1.52 16 12 C 0.49 10.07 6.78 -10.98 -0.07 9.99 16 13 O -0.53 -13.33 13.34 -17.94 -0.24 -13.57 16 14 N -0.71 -15.20 5.07 -54.93 -0.28 -15.48 16 15 C 0.27 7.06 2.56 -69.08 -0.18 6.89 16 16 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 17 C -0.15 -3.83 9.26 37.16 0.34 -3.49 16 18 C -0.53 -14.38 8.73 -34.44 -0.30 -14.68 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 21 N -0.88 -25.50 11.32 55.43 0.63 -24.87 16 22 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.40 3.49 8.83 -40.82 -0.36 3.13 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.56 5.75 -51.93 -0.30 1.26 16 32 H 0.09 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.08 0.92 7.62 -51.93 -0.40 0.52 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 39 H 0.39 7.02 8.54 -40.82 -0.35 6.67 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -34.82 345.94 -8.52 -43.34 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.15 Total: 8.50 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.21 Total: 0.88 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.11 Total: -49.63 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.47 Total: -24.17 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.82 -8.52 -43.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331988110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.104 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds