Wall clock time and date at job start Tue Mar 31 2020 05:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.39877 * 2 1 4 4 C 1.47685 * 109.43509 * 119.88988 * 2 1 3 5 5 O 1.42415 * 113.58998 * 180.87082 * 4 2 1 6 6 C 1.40520 * 113.59056 * 272.12522 * 5 4 2 7 7 C 1.54299 * 109.80332 * 95.39752 * 6 5 4 8 8 N 1.48176 * 110.69137 * 320.64956 * 7 6 5 9 9 C 1.34783 * 118.51329 * 138.77208 * 8 7 6 10 10 O 1.21587 * 119.99966 * 175.95405 * 9 8 7 11 11 N 1.34781 * 119.99469 * 355.95385 * 9 8 7 12 12 C 1.46499 * 119.99579 * 185.83392 * 11 9 8 13 13 C 1.52992 * 109.47066 * 184.86494 * 12 11 9 14 14 C 1.50698 * 115.55389 * 306.04169 * 13 12 11 15 15 H 1.07999 * 120.00073 * 144.05502 * 14 13 12 16 16 C 1.37874 * 120.00097 * 324.06307 * 14 13 12 17 17 N 1.31518 * 119.99844 * 2.94231 * 16 14 13 18 18 Si 1.86799 * 120.00411 * 182.94127 * 16 14 13 19 19 H 1.48505 * 109.46719 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46891 * 119.99643 * 18 16 14 21 21 H 1.48491 * 109.47428 * 240.00191 * 18 16 14 22 22 C 1.53011 * 117.49911 * 160.37194 * 13 12 11 23 23 C 1.53001 * 117.49671 * 91.71571 * 13 12 11 24 24 C 1.44459 * 122.97622 * 318.79945 * 8 7 6 25 25 H 1.09004 * 109.46532 * 179.89577 * 1 2 3 26 26 H 1.08999 * 109.47181 * 299.89312 * 1 2 3 27 27 H 1.09002 * 109.46846 * 59.89701 * 1 2 3 28 28 H 1.08999 * 108.64626 * 301.94729 * 4 2 1 29 29 H 1.08996 * 108.64794 * 59.92406 * 4 2 1 30 30 H 1.08995 * 109.40760 * 335.31120 * 6 5 4 31 31 H 1.09003 * 109.40707 * 215.47304 * 6 5 4 32 32 H 1.08994 * 109.23380 * 80.96460 * 7 6 5 33 33 H 1.09003 * 109.23186 * 200.38094 * 7 6 5 34 34 H 0.96989 * 120.00200 * 5.84374 * 11 9 8 35 35 H 1.09000 * 109.47607 * 304.87111 * 12 11 9 36 36 H 1.09006 * 109.46882 * 64.86941 * 12 11 9 37 37 H 0.96998 * 120.00118 * 185.00099 * 17 16 14 38 38 H 1.08996 * 117.49609 * 0.02562 * 22 13 12 39 39 H 1.08999 * 117.49672 * 145.02363 * 22 13 12 40 40 H 1.09005 * 117.49561 * 214.97724 * 23 13 12 41 41 H 1.08992 * 117.50359 * 359.97438 * 23 13 12 42 42 H 1.08997 * 109.49761 * 208.86534 * 24 8 7 43 43 H 1.09002 * 109.49600 * 328.95594 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8921 1.0282 0.0000 4 6 2.0215 -0.6940 1.2074 5 8 3.4417 -0.7283 1.3068 6 6 4.0245 -1.8301 0.6581 7 6 4.4689 -1.4251 -0.7629 8 7 3.4707 -0.5255 -1.3872 9 6 3.9124 0.5298 -2.1000 10 8 3.1200 1.2429 -2.6848 11 7 5.2324 0.7944 -2.1643 12 6 5.7038 2.0110 -2.8306 13 6 7.2332 2.0106 -2.8704 14 6 7.9181 1.8261 -1.5408 15 1 8.8359 1.2601 -1.4800 16 6 7.3729 2.3797 -0.4018 17 7 6.2255 3.0193 -0.4659 18 14 8.2637 2.2212 1.2324 19 1 9.5250 1.4621 1.0369 20 1 8.5773 3.5742 1.7584 21 1 7.3976 1.5021 2.2007 22 6 7.9135 2.9207 -3.8952 23 6 7.9076 1.4041 -4.1026 24 6 2.0455 -0.7279 -1.2662 25 1 -0.3632 -1.0277 -0.0019 26 1 -0.3633 0.5122 0.8909 27 1 -0.3633 0.5154 -0.8891 28 1 1.6221 -0.1886 2.0867 29 1 1.6494 -1.7185 1.1963 30 1 3.2965 -2.6388 0.5931 31 1 4.8913 -2.1680 1.2260 32 1 5.4289 -0.9120 -0.7063 33 1 4.5762 -2.3209 -1.3746 34 1 5.8701 0.1794 -1.7697 35 1 5.3138 2.0426 -3.8479 36 1 5.3549 2.8850 -2.2804 37 1 5.8774 3.4707 0.3188 38 1 7.2714 3.5200 -4.5406 39 1 8.8565 3.3856 -3.6076 40 1 8.8468 0.8720 -3.9515 41 1 7.2618 1.0051 -4.8847 42 1 1.5447 -0.3250 -2.1465 43 1 1.8352 -1.7942 -1.1836 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334600095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:38 Heat of formation + Delta-G solvation = -36.839292 kcal Electronic energy + Delta-G solvation = -24063.175514 eV Core-core repulsion = 20723.910833 eV Total energy + Delta-G solvation = -3339.264681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11343 -38.33139 -36.69564 -35.00422 -34.28437 -32.74411 -32.08028 -29.18038 -26.88034 -26.12513 -25.58971 -24.43094 -22.30935 -21.19280 -20.64200 -19.21849 -18.82156 -17.72745 -16.89422 -16.16857 -15.80894 -15.46220 -14.88770 -14.70513 -14.34094 -13.94535 -13.75279 -13.40251 -13.26345 -12.98357 -12.72817 -12.36616 -12.05147 -11.88552 -11.78442 -11.42772 -11.32633 -11.06235 -11.02127 -10.72176 -10.67047 -10.47188 -10.46182 -10.20437 -9.69872 -9.51126 -9.13048 -8.89601 -8.80123 -8.25728 -8.18558 -7.55756 -5.94443 -4.14626 3.25130 3.33476 3.35406 3.37165 3.97715 4.12195 4.34303 4.71617 4.82248 4.91398 5.04084 5.14648 5.15473 5.29447 5.35551 5.49233 5.53061 5.59489 5.61229 5.72554 5.78045 5.94806 5.99419 6.09541 6.15330 6.22808 6.37145 6.44433 6.61049 6.67214 6.81563 6.93216 7.05725 7.21706 7.30823 7.43037 7.59736 7.69126 7.85804 8.04388 8.37490 8.81584 9.02380 9.48879 9.57055 10.94723 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016770 B = 0.006683 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.262017 B = 4188.624354 C = 5040.955214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.147 4.147 3 H 0.087 0.913 4 C 0.072 3.928 5 O -0.360 6.360 6 C 0.052 3.948 7 C 0.081 3.919 8 N -0.628 5.628 9 C 0.701 3.299 10 O -0.610 6.610 11 N -0.699 5.699 12 C 0.183 3.817 13 C 0.036 3.964 14 C -0.499 4.499 15 H 0.060 0.940 16 C 0.076 3.924 17 N -0.861 5.861 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.281 1.281 22 C -0.198 4.198 23 C -0.212 4.212 24 C 0.144 3.856 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.395 0.605 35 H 0.019 0.981 36 H 0.108 0.892 37 H 0.262 0.738 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.616 -10.525 2.568 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 H 0.105 0.895 4 C -0.005 4.005 5 O -0.277 6.277 6 C -0.026 4.026 7 C -0.043 4.043 8 N -0.366 5.366 9 C 0.402 3.598 10 O -0.491 6.491 11 N -0.352 5.352 12 C 0.059 3.941 13 C 0.036 3.964 14 C -0.536 4.536 15 H 0.078 0.922 16 C -0.129 4.129 17 N -0.497 5.497 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.207 1.207 22 C -0.237 4.237 23 C -0.249 4.249 24 C 0.019 3.981 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.231 0.769 35 H 0.037 0.963 36 H 0.125 0.875 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.224 -9.800 2.391 13.015 hybrid contribution 0.793 -0.427 0.941 1.303 sum -7.431 -10.227 3.332 13.073 Atomic orbital electron populations 1.21646 0.94092 1.01492 1.02341 1.21617 0.96031 1.02757 0.96348 0.89495 1.21546 0.81412 0.99452 0.98082 1.87534 1.19610 1.46904 1.73645 1.22854 0.98606 0.88537 0.92648 1.22675 0.93389 0.94326 0.93909 1.46780 1.05425 1.29207 1.55188 1.15964 0.83577 0.80516 0.79715 1.90802 1.55318 1.51390 1.51567 1.45025 1.03988 1.26217 1.59963 1.20909 0.92111 0.88058 0.93018 1.19257 0.90960 0.97157 0.89074 1.20513 1.08477 1.34903 0.89750 0.92175 1.24985 0.94176 0.94993 0.98729 1.69896 1.17168 1.32908 1.29717 0.86576 0.79694 0.78041 0.83998 1.19851 1.20968 1.20682 1.22930 1.02835 0.91637 1.06276 1.22938 1.02575 0.95983 1.03435 1.21140 0.80627 0.98380 0.97940 0.92873 0.92545 0.91881 0.90288 0.93779 0.93007 0.88940 0.89070 0.91685 0.76866 0.96322 0.87484 0.92780 0.91501 0.90265 0.90739 0.91422 0.89488 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.15 37.16 0.34 -1.16 16 2 C -0.15 -2.10 2.88 -92.20 -0.27 -2.37 16 3 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 4 C 0.07 0.95 5.26 34.59 0.18 1.13 16 5 O -0.36 -5.83 10.21 -34.08 -0.35 -6.18 16 6 C 0.05 0.67 6.50 37.84 0.25 0.92 16 7 C 0.08 1.20 6.49 -2.44 -0.02 1.18 16 8 N -0.63 -11.14 2.55 -177.66 -0.45 -11.59 16 9 C 0.70 15.65 8.21 -86.91 -0.71 14.94 16 10 O -0.61 -15.51 15.69 5.29 0.08 -15.43 16 11 N -0.70 -15.90 5.02 -65.23 -0.33 -16.22 16 12 C 0.18 4.52 4.64 -4.05 -0.02 4.50 16 13 C 0.04 0.88 2.06 -155.66 -0.32 0.55 16 14 C -0.50 -12.79 8.28 -34.44 -0.29 -13.07 16 15 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 16 C 0.08 1.97 5.31 -17.82 -0.09 1.88 16 17 N -0.86 -23.38 10.22 55.43 0.57 -22.81 16 18 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 C -0.20 -4.43 9.96 -26.69 -0.27 -4.69 16 23 C -0.21 -4.52 9.92 -26.69 -0.26 -4.79 16 24 C 0.14 2.17 4.77 -4.14 -0.02 2.15 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.47 7.27 -51.93 -0.38 0.09 16 30 H 0.05 0.53 7.20 -51.93 -0.37 0.16 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.53 5.62 -51.93 -0.29 1.23 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.39 8.59 5.30 -40.82 -0.22 8.38 16 35 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 36 H 0.11 3.00 5.94 -51.93 -0.31 2.70 16 37 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.09 1.44 7.16 -51.93 -0.37 1.07 16 43 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -30.45 338.31 -8.87 -39.32 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -6.97 Total: 11.29 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -1.50 Total: 1.15 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.21 Total: -50.63 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.27 Total: -21.60 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.45 -8.87 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334600095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.480 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds