Wall clock time and date at job start Tue Mar 31 2020 05:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.43420 * 2 1 4 4 C 1.47691 * 109.43514 * 240.13224 * 2 1 3 5 5 O 1.42487 * 113.66434 * 179.11596 * 4 2 1 6 6 C 1.40524 * 113.54176 * 87.77939 * 5 4 2 7 7 C 1.54284 * 109.86438 * 264.69764 * 6 5 4 8 8 N 1.48175 * 110.70085 * 39.38941 * 7 6 5 9 9 C 1.34781 * 118.51281 * 221.23143 * 8 7 6 10 10 O 1.21587 * 119.99930 * 174.80651 * 9 8 7 11 11 N 1.34771 * 120.00104 * 354.80105 * 9 8 7 12 12 C 1.46491 * 120.00350 * 184.93081 * 11 9 8 13 13 C 1.52998 * 109.47432 * 185.01468 * 12 11 9 14 14 C 1.50699 * 115.55284 * 272.80020 * 13 12 11 15 15 H 1.07991 * 120.00308 * 143.58609 * 14 13 12 16 16 C 1.37879 * 119.99730 * 323.58769 * 14 13 12 17 17 N 1.31515 * 119.99919 * 171.01279 * 16 14 13 18 18 Si 1.86804 * 120.00143 * 351.01363 * 16 14 13 19 19 H 1.48502 * 109.47184 * 95.86397 * 18 16 14 20 20 H 1.48496 * 109.47176 * 215.86383 * 18 16 14 21 21 H 1.48497 * 109.47144 * 335.86418 * 18 16 14 22 22 C 1.53001 * 117.49930 * 127.09348 * 13 12 11 23 23 C 1.53001 * 117.50095 * 58.47057 * 13 12 11 24 24 C 1.44467 * 122.97619 * 41.20181 * 8 7 6 25 25 H 1.09004 * 109.46475 * 300.08123 * 1 2 3 26 26 H 1.08998 * 109.47180 * 60.08218 * 1 2 3 27 27 H 1.08998 * 109.47111 * 180.08577 * 1 2 3 28 28 H 1.08998 * 108.64337 * 300.21442 * 4 2 1 29 29 H 1.09000 * 108.64206 * 58.04427 * 4 2 1 30 30 H 1.09004 * 109.40035 * 144.57811 * 6 5 4 31 31 H 1.09004 * 109.40750 * 24.82174 * 6 5 4 32 32 H 1.08997 * 109.23507 * 279.07077 * 7 6 5 33 33 H 1.09005 * 109.23215 * 159.69978 * 7 6 5 34 34 H 0.97006 * 119.99870 * 4.92948 * 11 9 8 35 35 H 1.09001 * 109.47004 * 305.01210 * 12 11 9 36 36 H 1.09001 * 109.47752 * 65.01167 * 12 11 9 37 37 H 0.97009 * 120.00001 * 179.97438 * 17 16 14 38 38 H 1.08995 * 117.49893 * 359.97438 * 22 13 12 39 39 H 1.09005 * 117.50165 * 145.02430 * 22 13 12 40 40 H 1.08999 * 117.50314 * 214.98371 * 23 13 12 41 41 H 1.09005 * 117.49304 * 359.97438 * 23 13 12 42 42 H 1.08996 * 109.49220 * 151.14078 * 24 8 7 43 43 H 1.08996 * 109.51605 * 31.07072 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0215 -0.6936 -1.2078 5 8 3.4423 -0.7285 -1.3090 6 6 4.0244 -1.8301 -0.6591 7 6 4.4688 -1.4257 0.7619 8 7 3.4707 -0.5263 1.3868 9 6 3.9126 0.5286 2.0999 10 8 3.1203 1.3366 2.5447 11 7 5.2326 0.6878 2.3201 12 6 5.7056 1.7719 3.1844 13 6 7.2351 1.8078 3.1670 14 6 7.9177 0.9166 4.1724 15 1 8.8387 0.4161 3.9128 16 6 7.3663 0.7403 5.4238 17 7 7.8587 -0.1681 6.2373 18 14 5.9198 1.7919 5.9637 19 1 4.6533 1.0585 5.7115 20 1 6.0386 2.0904 7.4134 21 1 5.9174 3.0625 5.1952 22 6 7.9067 3.1415 2.8337 23 6 7.9218 2.0014 1.8135 24 6 2.0454 -0.7285 1.2658 25 1 -0.3632 0.5151 0.8893 26 1 -0.3633 0.5125 -0.8907 27 1 -0.3633 -1.0276 0.0015 28 1 1.6473 -1.7173 -1.1982 29 1 1.6219 -0.1879 -2.0868 30 1 4.8910 -2.1690 -1.2269 31 1 3.2963 -2.6387 -0.5945 32 1 5.4288 -0.9126 0.7056 33 1 4.5768 -2.3218 1.3731 34 1 5.8696 0.0845 1.9063 35 1 5.3157 2.7227 2.8210 36 1 5.3578 1.6024 4.2035 37 1 7.4710 -0.2919 7.1179 38 1 7.2589 3.9933 2.6265 39 1 8.8425 3.3747 3.3418 40 1 8.8674 1.4844 1.6504 41 1 7.2839 2.1027 0.9355 42 1 1.5449 -0.3259 2.1464 43 1 1.8346 -1.7947 1.1832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334600098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:41 Heat of formation + Delta-G solvation = -25.609526 kcal Electronic energy + Delta-G solvation = -23726.176394 eV Core-core repulsion = 20387.398672 eV Total energy + Delta-G solvation = -3338.777722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49133 -38.77267 -37.14896 -35.29318 -34.65263 -33.15272 -32.25569 -29.47067 -27.69750 -26.39583 -26.02278 -24.55763 -22.65809 -21.52153 -20.90228 -19.52041 -19.15979 -18.11202 -17.22861 -16.45804 -16.01118 -15.99201 -15.50856 -15.17602 -14.57154 -14.18552 -14.08863 -13.65844 -13.51409 -13.23131 -12.95769 -12.86828 -12.43612 -12.22886 -12.09229 -11.99673 -11.66118 -11.36472 -11.03536 -10.92171 -10.72625 -10.61552 -10.43927 -10.09660 -9.88655 -9.64883 -9.45066 -9.28926 -8.96634 -8.57086 -8.44182 -8.03677 -6.20756 -4.17075 2.93777 3.31313 3.40668 3.43596 3.59205 3.70941 4.25697 4.34223 4.56327 4.65894 4.78646 4.86906 4.89625 5.06046 5.14298 5.26512 5.32911 5.36697 5.41744 5.49184 5.56085 5.64278 5.68262 5.76653 5.89769 5.91769 6.00241 6.15594 6.17434 6.21408 6.43014 6.48266 6.68977 6.78283 6.89508 7.07832 7.12961 7.14046 7.24964 7.65881 8.39181 8.42106 8.82041 9.04088 9.42797 10.90337 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021611 B = 0.005333 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.323349 B = 5249.357591 C = 5604.592972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.145 4.145 3 H 0.085 0.915 4 C 0.069 3.931 5 O -0.365 6.365 6 C 0.051 3.949 7 C 0.080 3.920 8 N -0.624 5.624 9 C 0.701 3.299 10 O -0.598 6.598 11 N -0.724 5.724 12 C 0.168 3.832 13 C -0.008 4.008 14 C -0.486 4.486 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.888 5.888 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.299 1.299 21 H -0.264 1.264 22 C -0.197 4.197 23 C -0.187 4.187 24 C 0.141 3.859 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.399 0.601 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.267 0.733 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.196 -4.504 -14.462 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 H 0.103 0.897 4 C -0.007 4.007 5 O -0.282 6.282 6 C -0.028 4.028 7 C -0.044 4.044 8 N -0.362 5.362 9 C 0.402 3.598 10 O -0.477 6.477 11 N -0.380 5.380 12 C 0.045 3.955 13 C -0.010 4.010 14 C -0.523 4.523 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.524 5.524 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.228 1.228 21 H -0.189 1.189 22 C -0.235 4.235 23 C -0.225 4.225 24 C 0.016 3.984 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.236 0.764 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.648 -3.898 -14.019 18.639 hybrid contribution -0.523 0.013 0.366 0.639 sum -12.171 -3.885 -13.653 18.698 Atomic orbital electron populations 1.21652 0.93791 1.01792 1.02478 1.21590 0.96350 1.02461 0.96145 0.89651 1.21593 0.81142 0.99897 0.98079 1.87486 1.19905 1.47145 1.73712 1.22888 0.98968 0.88667 0.92236 1.22732 0.92524 0.94898 0.94244 1.46820 1.05931 1.28404 1.55036 1.16008 0.83187 0.81536 0.79067 1.90859 1.54967 1.44426 1.57498 1.45351 1.04927 1.35302 1.52377 1.21290 0.93991 0.88023 0.92203 1.19582 0.89140 0.96588 0.95671 1.20317 1.09739 1.26452 0.95757 0.90222 1.25004 0.96857 0.94256 0.96470 1.69896 1.42134 1.31462 1.08932 0.86782 0.82247 0.82094 0.76358 1.20768 1.22791 1.18883 1.23138 1.03293 0.92404 1.04684 1.22769 1.02362 1.04469 0.92862 1.21246 0.79938 0.99001 0.98170 0.91783 0.92403 0.92647 0.93405 0.90055 0.88531 0.92577 0.89543 0.90757 0.76360 0.92798 0.93043 0.92361 0.91137 0.89279 0.89699 0.90824 0.89465 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.15 37.16 0.34 -0.90 16 2 C -0.15 -1.69 2.88 -92.20 -0.27 -1.96 16 3 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 4 C 0.07 0.71 5.26 34.59 0.18 0.89 16 5 O -0.37 -4.48 10.22 -34.09 -0.35 -4.83 16 6 C 0.05 0.50 6.49 37.83 0.25 0.74 16 7 C 0.08 0.97 6.39 -2.45 -0.02 0.96 16 8 N -0.62 -9.74 2.55 -177.67 -0.45 -10.20 16 9 C 0.70 14.19 8.20 -86.92 -0.71 13.48 16 10 O -0.60 -14.11 15.77 5.29 0.08 -14.02 16 11 N -0.72 -14.83 5.29 -65.23 -0.35 -15.18 16 12 C 0.17 3.89 4.35 -4.05 -0.02 3.88 16 13 C -0.01 -0.20 1.34 -155.66 -0.21 -0.40 16 14 C -0.49 -13.17 9.59 -34.44 -0.33 -13.50 16 15 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 16 C 0.08 2.20 5.44 -17.82 -0.10 2.10 16 17 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 18 Si 0.89 22.99 24.33 -169.99 -4.14 18.86 16 19 H -0.28 -7.43 6.94 56.52 0.39 -7.04 16 20 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 21 H -0.26 -6.56 6.40 56.52 0.36 -6.20 16 22 C -0.20 -4.11 9.88 -26.73 -0.26 -4.37 16 23 C -0.19 -3.68 9.65 -26.73 -0.26 -3.94 16 24 C 0.14 1.86 4.70 -4.14 -0.02 1.84 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.39 7.28 -51.93 -0.38 0.01 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.44 7.21 -51.93 -0.37 0.07 16 32 H 0.09 1.10 5.80 -51.93 -0.30 0.80 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.40 7.37 5.76 -40.82 -0.24 7.13 16 35 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 36 H 0.05 1.33 1.87 -51.93 -0.10 1.23 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 39 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 40 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.09 1.32 7.29 -51.93 -0.38 0.94 16 43 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -33.05 332.88 -7.68 -40.73 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.84 Total: 6.50 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.42 Total: -1.19 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.02 Total: -51.06 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.27 Total: -18.86 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.14 Total: 18.86 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.05 -7.68 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334600098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.121 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds