Wall clock time and date at job start Tue Mar 31 2020 05:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47225 * 2 1 4 4 C 1.54801 * 109.46958 * 240.00010 * 2 1 3 5 5 N 1.45123 * 109.53892 * 172.11429 * 4 2 1 6 6 C 1.34779 * 118.75885 * 269.29722 * 5 4 2 7 7 O 1.21585 * 119.99922 * 355.38511 * 6 5 4 8 8 N 1.34775 * 120.00085 * 175.39034 * 6 5 4 9 9 C 1.46506 * 119.99863 * 185.37085 * 8 6 5 10 10 C 1.53004 * 109.46900 * 185.01813 * 9 8 6 11 11 C 1.50703 * 115.55065 * 281.34494 * 10 9 8 12 12 H 1.07992 * 120.00063 * 147.08779 * 11 10 9 13 13 C 1.37873 * 119.99982 * 327.08944 * 11 10 9 14 14 N 1.31513 * 120.00000 * 163.95723 * 13 11 10 15 15 Si 1.86807 * 119.99996 * 343.95495 * 13 11 10 16 16 H 1.48508 * 109.46897 * 95.94293 * 15 13 11 17 17 H 1.48504 * 109.47073 * 215.93906 * 15 13 11 18 18 H 1.48495 * 109.47220 * 335.94586 * 15 13 11 19 19 C 1.53001 * 117.49794 * 135.63923 * 10 9 8 20 20 C 1.52993 * 117.49819 * 67.01513 * 10 9 8 21 21 C 1.47510 * 122.48611 * 89.29190 * 5 4 2 22 22 C 1.53578 * 111.02507 * 318.37488 * 21 5 4 23 23 C 1.51531 * 109.58157 * 320.02014 * 22 21 5 24 24 O 1.38028 * 109.46545 * 119.99680 * 2 1 3 25 25 H 1.09001 * 109.47243 * 300.00465 * 1 2 3 26 26 H 1.09002 * 109.46782 * 59.99551 * 1 2 3 27 27 H 1.08999 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46258 * 292.13207 * 4 2 1 29 29 H 1.08998 * 109.46105 * 52.09619 * 4 2 1 30 30 H 0.97002 * 119.99995 * 5.36962 * 8 6 5 31 31 H 1.09000 * 109.46931 * 305.01893 * 9 8 6 32 32 H 1.09003 * 109.46903 * 65.01955 * 9 8 6 33 33 H 0.97003 * 119.99819 * 179.97438 * 14 13 11 34 34 H 1.08998 * 117.49442 * 359.97438 * 19 10 9 35 35 H 1.08992 * 117.50082 * 145.02039 * 19 10 9 36 36 H 1.09001 * 117.49962 * 214.97723 * 20 10 9 37 37 H 1.09002 * 117.50254 * 0.02562 * 20 10 9 38 38 H 1.09007 * 109.16821 * 197.98110 * 21 5 4 39 39 H 1.08994 * 109.12667 * 78.74895 * 21 5 4 40 40 H 1.09001 * 109.45198 * 199.99055 * 22 21 5 41 41 H 1.08995 * 109.44958 * 80.05320 * 22 21 5 42 42 H 1.09007 * 109.59153 * 331.61478 * 23 22 21 43 43 H 1.08999 * 109.59081 * 211.18285 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0460 -0.7297 -1.2640 5 7 3.4850 -0.5703 -1.3630 6 6 3.9752 0.4796 -2.0514 7 8 3.2189 1.2238 -2.6452 8 7 5.3037 0.7046 -2.0817 9 6 5.8281 1.9093 -2.7299 10 6 7.3573 1.8610 -2.7352 11 6 8.0237 2.2277 -1.4341 12 1 8.9514 1.7534 -1.1502 13 6 7.4490 3.1686 -0.6064 14 7 7.8361 3.2663 0.6467 15 14 6.1203 4.3048 -1.2647 16 1 4.7840 3.7462 -0.9363 17 1 6.2627 5.6457 -0.6427 18 1 6.2577 4.4255 -2.7384 19 6 8.0720 2.2521 -4.0302 20 6 8.0272 0.7863 -3.5937 21 6 4.4315 -1.5138 -0.7387 22 6 3.9600 -1.9190 0.6656 23 6 3.3880 -0.7100 1.3778 24 8 1.9900 -0.6506 1.1271 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8020 -1.7900 -1.1963 29 1 1.5717 -0.3039 -2.1482 30 1 5.9127 0.0688 -1.6744 31 1 5.4625 1.9584 -3.7556 32 1 5.4942 2.7909 -2.1825 33 1 7.4320 3.9286 1.2289 34 1 7.4526 2.5433 -4.8786 35 1 9.0243 2.7747 -3.9415 36 1 8.9501 0.3448 -3.2177 37 1 7.3785 0.1139 -4.1551 38 1 5.4112 -1.0416 -0.6648 39 1 4.5100 -2.4052 -1.3610 40 1 4.8046 -2.3089 1.2337 41 1 3.1924 -2.6884 0.5828 42 1 3.8654 0.1952 1.0023 43 1 3.5634 -0.8004 2.4498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336297476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:37 Heat of formation + Delta-G solvation = -26.395563 kcal Electronic energy + Delta-G solvation = -23984.783688 eV Core-core repulsion = 20645.971881 eV Total energy + Delta-G solvation = -3338.811807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52010 -38.70621 -37.13215 -35.29877 -33.83661 -33.11995 -32.32402 -30.27735 -27.74257 -26.54296 -25.62381 -24.52998 -21.97864 -21.44985 -21.31684 -19.53836 -19.17260 -18.12695 -16.89573 -16.55030 -16.10109 -15.96328 -15.69220 -14.85450 -14.79259 -14.05612 -13.83168 -13.66951 -13.35249 -13.01431 -12.89807 -12.81474 -12.58382 -12.29991 -12.07931 -11.88727 -11.58207 -11.26895 -11.11668 -10.98569 -10.65914 -10.50687 -10.47101 -10.11827 -9.82597 -9.56803 -9.49125 -9.40742 -9.03285 -8.56840 -8.43022 -8.05758 -6.28789 -4.20791 2.91672 3.26033 3.36874 3.39126 3.56165 3.69561 4.19288 4.29502 4.69903 4.74591 4.82758 4.99759 5.11462 5.17919 5.25684 5.30225 5.45751 5.50786 5.60117 5.65622 5.67549 5.71616 5.78053 5.85854 5.93955 5.98673 6.07861 6.11542 6.14741 6.18031 6.39009 6.44476 6.63859 6.73221 6.84131 7.03656 7.10680 7.21351 7.61261 7.67343 8.34341 8.38018 8.77111 8.98366 9.37345 10.82219 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018298 B = 0.006108 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.814602 B = 4582.930878 C = 4791.345608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.082 3.918 3 H 0.052 0.948 4 C 0.102 3.898 5 N -0.633 5.633 6 C 0.697 3.303 7 O -0.598 6.598 8 N -0.722 5.722 9 C 0.166 3.834 10 C -0.007 4.007 11 C -0.490 4.490 12 H 0.080 0.920 13 C 0.083 3.917 14 N -0.881 5.881 15 Si 0.886 3.114 16 H -0.279 1.279 17 H -0.298 1.298 18 H -0.264 1.264 19 C -0.199 4.199 20 C -0.187 4.187 21 C 0.106 3.894 22 C -0.162 4.162 23 C 0.073 3.927 24 O -0.389 6.389 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.401 0.599 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.267 0.733 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.598 -10.658 -0.764 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.022 3.978 3 H 0.070 0.930 4 C -0.023 4.023 5 N -0.370 5.370 6 C 0.399 3.601 7 O -0.478 6.478 8 N -0.378 5.378 9 C 0.043 3.957 10 C -0.008 4.008 11 C -0.526 4.526 12 H 0.098 0.902 13 C -0.122 4.122 14 N -0.516 5.516 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.227 1.227 18 H -0.189 1.189 19 C -0.237 4.237 20 C -0.225 4.225 21 C -0.017 4.017 22 C -0.200 4.200 23 C -0.003 4.003 24 O -0.308 6.308 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.239 0.761 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.247 -10.092 -0.885 14.409 hybrid contribution -0.025 0.482 -0.291 0.564 sum -10.271 -9.609 -1.176 14.115 Atomic orbital electron populations 1.21690 0.92572 1.02632 1.02636 1.22049 0.94846 0.95511 0.85442 0.93003 1.22161 0.79700 1.00838 0.99576 1.47070 1.06233 1.27562 1.56171 1.16056 0.83065 0.81147 0.79868 1.90856 1.57833 1.49265 1.49814 1.45306 1.04729 1.26450 1.61275 1.21183 0.93413 0.85544 0.95574 1.19560 0.89034 0.99810 0.92427 1.20271 1.09430 1.23471 0.99477 0.90243 1.24959 0.96349 0.96786 0.94084 1.69939 1.43205 1.34156 1.04320 0.86891 0.81673 0.79686 0.80003 1.20701 1.22667 1.18880 1.23128 1.03175 0.97517 0.99916 1.22779 1.02670 0.91400 1.05648 1.21916 0.92834 0.93103 0.93869 1.22436 1.02200 0.99664 0.95717 1.22174 0.80693 0.97565 0.99841 1.86199 1.23655 1.76998 1.43958 0.91795 0.90894 0.91882 0.90417 0.89039 0.76090 0.92774 0.93021 0.92334 0.91155 0.89307 0.89740 0.90910 0.89654 0.91608 0.89368 0.90362 0.92405 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.55 37.16 0.36 -1.16 16 2 C 0.08 1.16 3.26 -25.78 -0.08 1.07 16 3 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.10 1.42 4.90 -3.83 -0.02 1.40 16 5 N -0.63 -9.94 2.19 -178.19 -0.39 -10.34 16 6 C 0.70 13.91 8.22 -86.92 -0.71 13.20 16 7 O -0.60 -13.89 15.72 5.29 0.08 -13.80 16 8 N -0.72 -14.53 5.40 -65.22 -0.35 -14.88 16 9 C 0.17 3.75 4.65 -4.04 -0.02 3.73 16 10 C -0.01 -0.16 1.30 -155.66 -0.20 -0.36 16 11 C -0.49 -12.92 9.56 -34.44 -0.33 -13.25 16 12 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 13 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 14 N -0.88 -25.52 13.96 55.43 0.77 -24.75 16 15 Si 0.89 22.45 24.32 -169.99 -4.13 18.32 16 16 H -0.28 -7.32 6.87 56.52 0.39 -6.94 16 17 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 18 H -0.26 -6.48 6.80 56.52 0.38 -6.09 16 19 C -0.20 -4.05 9.88 -26.73 -0.26 -4.31 16 20 C -0.19 -3.60 9.93 -26.73 -0.27 -3.87 16 21 C 0.11 1.33 6.11 -3.19 -0.02 1.31 16 22 C -0.16 -1.78 5.78 -27.17 -0.16 -1.93 16 23 C 0.07 0.98 6.37 36.41 0.23 1.21 16 24 O -0.39 -5.51 9.47 -26.58 -0.25 -5.77 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 29 H 0.09 1.36 7.21 -51.93 -0.37 0.99 16 30 H 0.40 7.38 5.86 -40.82 -0.24 7.14 16 31 H 0.05 1.19 7.92 -51.93 -0.41 0.78 16 32 H 0.05 1.30 1.79 -51.93 -0.09 1.21 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 35 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.09 1.15 5.59 -51.93 -0.29 0.85 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.80 8.01 -51.93 -0.42 0.39 16 42 H 0.06 0.94 7.40 -51.93 -0.38 0.56 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -31.34 334.55 -7.68 -39.02 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.87 Total: 7.93 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.58 Total: -0.77 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.03 Total: -49.96 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.17 Total: -19.57 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.13 Total: 18.32 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.34 -7.68 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336297476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.624 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds