Wall clock time and date at job start Tue Mar 31 2020 05:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46892 * 2 1 4 4 C 1.54800 * 109.47078 * 119.99707 * 2 1 3 5 5 N 1.45122 * 109.54330 * 187.88060 * 4 2 1 6 6 C 1.34777 * 118.75531 * 90.72254 * 5 4 2 7 7 O 1.21582 * 120.00501 * 354.90855 * 6 5 4 8 8 N 1.34779 * 119.99442 * 174.90848 * 6 5 4 9 9 C 1.46508 * 119.99603 * 185.01823 * 8 6 5 10 10 C 1.53002 * 109.46866 * 184.94519 * 9 8 6 11 11 C 1.50697 * 115.55076 * 304.04920 * 10 9 8 12 12 H 1.08002 * 119.99759 * 143.14302 * 11 10 9 13 13 C 1.37872 * 120.00063 * 323.14241 * 11 10 9 14 14 N 1.31514 * 120.00136 * 168.87589 * 13 11 10 15 15 Si 1.86797 * 120.00224 * 348.87077 * 13 11 10 16 16 H 1.48504 * 109.47361 * 95.51233 * 15 13 11 17 17 H 1.48499 * 109.47480 * 215.51682 * 15 13 11 18 18 H 1.48504 * 109.47195 * 335.51332 * 15 13 11 19 19 C 1.53001 * 117.49429 * 158.37873 * 10 9 8 20 20 C 1.52997 * 117.49497 * 89.72393 * 10 9 8 21 21 C 1.47453 * 122.48157 * 270.72700 * 5 4 2 22 22 C 1.53571 * 111.05607 * 41.61903 * 21 5 4 23 23 C 1.51538 * 109.56493 * 39.98123 * 22 21 5 24 24 O 1.38015 * 109.47155 * 240.00318 * 2 1 3 25 25 H 1.08994 * 109.46919 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47023 * 299.99929 * 1 2 3 27 27 H 1.09000 * 109.47202 * 59.99554 * 1 2 3 28 28 H 1.09002 * 109.46300 * 307.90546 * 4 2 1 29 29 H 1.09001 * 109.45893 * 67.85332 * 4 2 1 30 30 H 0.96996 * 120.00242 * 5.02201 * 8 6 5 31 31 H 1.08996 * 109.47182 * 304.94707 * 9 8 6 32 32 H 1.09002 * 109.46898 * 64.94473 * 9 8 6 33 33 H 0.97002 * 120.00294 * 180.02562 * 14 13 11 34 34 H 1.08996 * 117.50284 * 359.97438 * 19 10 9 35 35 H 1.08999 * 117.49631 * 145.02428 * 19 10 9 36 36 H 1.09007 * 117.49603 * 214.97263 * 20 10 9 37 37 H 1.08997 * 117.50560 * 359.97007 * 20 10 9 38 38 H 1.09000 * 109.14633 * 281.21667 * 21 5 4 39 39 H 1.09003 * 109.16196 * 162.03318 * 21 5 4 40 40 H 1.08998 * 109.45289 * 279.95339 * 22 21 5 41 41 H 1.09003 * 109.45320 * 160.00282 * 22 21 5 42 42 H 1.09000 * 109.58697 * 28.38716 * 23 22 21 43 43 H 1.08995 * 109.59409 * 148.83050 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0460 -0.7297 1.2640 5 7 3.4850 -0.5703 1.3630 6 6 3.9752 0.4794 2.0517 7 8 3.2192 1.3211 2.4967 8 7 5.3037 0.5959 2.2471 9 6 5.8285 1.6750 3.0876 10 6 7.3579 1.6568 3.0449 11 6 8.0036 0.3540 3.4409 12 1 8.8939 0.0159 2.9314 13 6 7.4579 -0.4062 4.4534 14 7 7.8817 -1.6348 4.6548 15 14 6.1168 0.3089 5.5394 16 1 4.7874 -0.0951 5.0153 17 1 6.2781 -0.1999 6.9251 18 1 6.2188 1.7905 5.5412 19 6 8.0902 2.9488 3.4126 20 6 8.0440 2.4830 1.9553 21 6 4.4310 -1.5135 0.7386 22 6 3.9599 -1.9188 -0.6657 23 6 3.3880 -0.7096 -1.3778 24 8 1.9900 -0.6505 -1.1269 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.5717 -0.3038 2.1482 29 1 1.8017 -1.7898 1.1964 30 1 5.9122 -0.0346 1.8312 31 1 5.4661 2.6336 2.7165 32 1 5.4919 1.5322 4.1144 33 1 7.4975 -2.1698 5.3669 34 1 7.4826 3.8119 3.6845 35 1 9.0394 2.8565 3.9405 36 1 8.9629 2.0844 1.5250 37 1 7.4060 3.0392 1.2685 38 1 4.5101 -2.4050 1.3608 39 1 5.4108 -1.0414 0.6651 40 1 3.1923 -2.6882 -0.5831 41 1 4.8048 -2.3086 -1.2336 42 1 3.8654 0.1954 -1.0021 43 1 3.5634 -0.7999 -2.4498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336297477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:40 Heat of formation + Delta-G solvation = -27.951116 kcal Electronic energy + Delta-G solvation = -23968.132908 eV Core-core repulsion = 20629.253647 eV Total energy + Delta-G solvation = -3338.879261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48649 -38.70026 -37.10285 -35.25514 -33.83283 -33.12287 -32.30632 -30.27624 -27.67265 -26.45930 -25.58839 -24.57700 -21.90695 -21.46688 -21.34828 -19.46948 -19.12367 -18.02158 -16.87868 -16.57895 -16.07148 -16.03376 -15.59502 -14.87240 -14.73637 -14.06190 -13.74384 -13.65644 -13.32352 -13.03053 -12.94286 -12.79290 -12.47062 -12.33301 -12.08702 -11.88774 -11.57496 -11.27353 -11.12381 -11.01302 -10.67725 -10.53983 -10.50174 -9.98957 -9.78571 -9.58618 -9.49436 -9.34379 -9.00962 -8.51700 -8.46034 -7.98397 -6.29055 -4.24754 3.00274 3.27540 3.35839 3.38276 3.60504 3.65666 4.29564 4.30559 4.70161 4.76097 4.85515 4.99396 5.12850 5.19229 5.25580 5.28843 5.42117 5.48725 5.60595 5.65155 5.68654 5.76715 5.86094 5.87898 5.91752 5.98049 6.05536 6.12848 6.14166 6.22810 6.42399 6.46752 6.62765 6.77661 6.85263 7.06388 7.19069 7.28198 7.59901 7.63385 8.34230 8.48095 8.75940 9.06670 9.35989 10.81678 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020466 B = 0.005689 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.777897 B = 4920.589315 C = 4986.131694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.084 3.916 3 H 0.053 0.947 4 C 0.103 3.897 5 N -0.632 5.632 6 C 0.697 3.303 7 O -0.603 6.603 8 N -0.718 5.718 9 C 0.158 3.842 10 C -0.009 4.009 11 C -0.490 4.490 12 H 0.080 0.920 13 C 0.086 3.914 14 N -0.885 5.885 15 Si 0.887 3.113 16 H -0.278 1.278 17 H -0.300 1.300 18 H -0.262 1.262 19 C -0.198 4.198 20 C -0.186 4.186 21 C 0.106 3.894 22 C -0.163 4.163 23 C 0.077 3.923 24 O -0.390 6.390 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.407 0.593 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.267 0.733 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.053 0.947 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 -0.064 -10.454 14.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.024 3.976 3 H 0.071 0.929 4 C -0.022 4.022 5 N -0.370 5.370 6 C 0.399 3.601 7 O -0.482 6.482 8 N -0.375 5.375 9 C 0.035 3.965 10 C -0.010 4.010 11 C -0.526 4.526 12 H 0.098 0.902 13 C -0.119 4.119 14 N -0.520 5.520 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.228 1.228 18 H -0.188 1.188 19 C -0.237 4.237 20 C -0.224 4.224 21 C -0.017 4.017 22 C -0.202 4.202 23 C 0.001 3.999 24 O -0.309 6.309 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.246 0.754 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.268 0.251 -10.103 14.407 hybrid contribution -0.021 0.083 0.783 0.788 sum -10.289 0.335 -9.320 13.887 Atomic orbital electron populations 1.21693 0.92652 1.02689 1.02553 1.22028 0.94758 0.95438 0.85348 0.92867 1.22142 0.79777 1.00845 0.99422 1.47028 1.06129 1.27322 1.56487 1.16047 0.83121 0.81807 0.79163 1.90839 1.57921 1.42356 1.57119 1.45318 1.04710 1.34239 1.53224 1.21163 0.93505 0.88461 0.93414 1.19552 0.89052 0.92748 0.99651 1.20298 1.12696 1.00787 1.18846 0.90224 1.24922 0.96263 0.94056 0.96644 1.69908 1.43066 1.07574 1.31485 0.86964 0.82172 0.79730 0.79311 1.20446 1.22814 1.18819 1.23099 1.03164 0.99589 0.97845 1.22815 1.02751 1.05560 0.91223 1.21885 0.92448 0.93709 0.93623 1.22463 1.02237 0.99632 0.95826 1.22141 0.80890 0.97394 0.99514 1.86198 1.23493 1.77148 1.44039 0.91887 0.90868 0.91877 0.89346 0.90418 0.75429 0.92749 0.92714 0.92351 0.91170 0.89304 0.89791 0.90914 0.91246 0.89757 0.90277 0.89433 0.92833 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.55 37.16 0.36 -1.11 16 2 C 0.08 1.13 3.25 -25.78 -0.08 1.04 16 3 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.10 1.50 4.82 -3.83 -0.02 1.48 16 5 N -0.63 -10.47 2.19 -178.25 -0.39 -10.86 16 6 C 0.70 14.31 8.21 -86.92 -0.71 13.60 16 7 O -0.60 -14.06 15.81 5.29 0.08 -13.97 16 8 N -0.72 -14.98 5.03 -65.22 -0.33 -15.30 16 9 C 0.16 3.54 4.35 -4.04 -0.02 3.52 16 10 C -0.01 -0.20 1.41 -155.66 -0.22 -0.41 16 11 C -0.49 -12.67 8.88 -34.44 -0.31 -12.98 16 12 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 13 C 0.09 2.31 5.42 -17.82 -0.10 2.22 16 14 N -0.88 -25.17 13.96 55.43 0.77 -24.40 16 15 Si 0.89 22.24 24.04 -169.99 -4.09 18.15 16 16 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 18 H -0.26 -6.41 6.38 56.52 0.36 -6.05 16 19 C -0.20 -4.04 9.96 -26.69 -0.27 -4.31 16 20 C -0.19 -3.61 9.93 -26.70 -0.27 -3.88 16 21 C 0.11 1.48 6.00 -3.22 -0.02 1.46 16 22 C -0.16 -1.77 5.79 -27.17 -0.16 -1.93 16 23 C 0.08 0.90 6.38 36.42 0.23 1.13 16 24 O -0.39 -5.12 9.46 -26.53 -0.25 -5.37 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.40 7.35 -51.93 -0.38 1.02 16 29 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 30 H 0.41 8.14 5.44 -40.82 -0.22 7.91 16 31 H 0.05 1.17 8.06 -51.93 -0.42 0.75 16 32 H 0.06 1.35 2.54 -51.93 -0.13 1.22 16 33 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.21 5.78 -51.93 -0.30 0.91 16 40 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.71 7.40 -51.93 -0.38 0.33 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -30.65 333.66 -7.67 -38.32 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.93 Total: 8.58 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.58 Total: -0.17 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.06 Total: -50.57 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.17 Total: -19.34 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.09 Total: 18.15 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.65 -7.67 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336297477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.367 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds