Wall clock time and date at job start Tue Mar 31 2020 05:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.67831 * 2 1 4 4 C 1.53297 * 109.71064 * 239.46681 * 2 1 3 5 5 O 1.42959 * 109.21974 * 187.95532 * 4 2 1 6 6 C 1.43049 * 114.18688 * 62.58644 * 5 4 2 7 7 H 1.08997 * 109.50890 * 57.32211 * 6 5 4 8 8 C 1.53003 * 109.56287 * 177.51004 * 6 5 4 9 9 C 1.53298 * 109.17624 * 297.43427 * 6 5 4 10 10 N 1.47145 * 109.68217 * 120.51909 * 2 1 3 11 11 C 1.34780 * 120.98162 * 350.31587 * 10 2 1 12 12 O 1.21583 * 120.00321 * 353.13482 * 11 10 2 13 13 N 1.34781 * 119.99882 * 173.13093 * 11 10 2 14 14 C 1.46496 * 119.99906 * 185.01198 * 13 11 10 15 15 C 1.53006 * 109.47019 * 175.18474 * 14 13 11 16 16 C 1.50693 * 115.55134 * 281.89490 * 15 14 13 17 17 H 1.08004 * 120.00082 * 144.00829 * 16 15 14 18 18 C 1.37884 * 120.00221 * 324.01340 * 16 15 14 19 19 N 1.31508 * 119.99554 * 340.55951 * 18 16 15 20 20 Si 1.86793 * 120.00021 * 160.55597 * 18 16 15 21 21 H 1.48501 * 109.47269 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47224 * 120.00228 * 20 18 16 23 23 H 1.48503 * 109.47407 * 240.00059 * 20 18 16 24 24 C 1.53002 * 117.49898 * 136.18760 * 15 14 13 25 25 C 1.52996 * 60.00112 * 252.51371 * 24 15 14 26 26 H 1.09005 * 109.46711 * 313.93962 * 1 2 3 27 27 H 1.09003 * 109.47228 * 73.93542 * 1 2 3 28 28 H 1.08999 * 109.47088 * 193.94374 * 1 2 3 29 29 H 1.09001 * 109.50668 * 307.87652 * 4 2 1 30 30 H 1.08995 * 109.51460 * 67.97945 * 4 2 1 31 31 H 1.09002 * 109.46962 * 179.72434 * 8 6 5 32 32 H 1.08996 * 109.46761 * 299.71765 * 8 6 5 33 33 H 1.08988 * 109.46954 * 59.71944 * 8 6 5 34 34 H 1.09004 * 109.68050 * 292.54512 * 9 6 5 35 35 H 1.08998 * 109.68087 * 172.02912 * 9 6 5 36 36 H 0.97003 * 119.99897 * 5.01524 * 13 11 10 37 37 H 1.08998 * 109.47056 * 295.18365 * 14 13 11 38 38 H 1.09001 * 109.47246 * 55.18766 * 14 13 11 39 39 H 0.97006 * 120.00155 * 185.01497 * 19 18 16 40 40 H 1.09003 * 117.49761 * 0.02562 * 24 15 14 41 41 H 1.08995 * 117.50239 * 145.01791 * 24 15 14 42 42 H 1.08998 * 117.49713 * 252.51362 * 25 24 15 43 43 H 1.08997 * 117.50476 * 107.48914 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 6 2.0471 -0.7332 -1.2430 5 8 3.4644 -0.8901 -1.1413 6 6 3.8875 -1.6887 -0.0326 7 1 3.4231 -2.6728 -0.0945 8 6 5.4100 -1.8382 -0.0604 9 6 3.4641 -1.0040 1.2720 10 7 2.0256 -0.7036 1.1935 11 6 1.1868 -1.0627 2.1855 12 8 0.0270 -0.6984 2.1627 13 7 1.6336 -1.8258 3.2027 14 6 0.6987 -2.3075 4.2225 15 6 1.4327 -3.2416 5.1867 16 6 1.6744 -4.6399 4.6795 17 1 2.5869 -5.1574 4.9366 18 6 0.7309 -5.2586 3.8870 19 7 -0.5097 -4.8224 3.8796 20 14 1.2147 -6.7163 2.8239 21 1 2.6586 -7.0084 3.0118 22 1 0.4147 -7.9037 3.2181 23 1 0.9555 -6.3962 1.3972 24 6 1.1595 -3.0696 6.6823 25 6 2.4996 -2.6246 6.0933 26 1 -0.3633 0.7131 0.7400 27 1 -0.3634 0.2844 -0.9876 28 1 -0.3633 -0.9974 0.2476 29 1 1.5760 -1.7139 -1.3094 30 1 1.8072 -0.1530 -2.1340 31 1 5.7312 -2.4429 0.7878 32 1 5.7103 -2.3252 -0.9881 33 1 5.8729 -0.8533 -0.0006 34 1 4.0259 -0.0787 1.4000 35 1 3.6549 -1.6689 2.1143 36 1 2.5742 -2.0559 3.2595 37 1 0.2950 -1.4592 4.7751 38 1 -0.1161 -2.8489 3.7417 39 1 -1.1892 -5.3010 3.3794 40 1 0.4566 -2.2912 6.9793 41 1 1.1545 -3.9678 7.2996 42 1 3.3763 -3.2302 6.3230 43 1 2.6787 -1.5532 6.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336616052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:58 Heat of formation + Delta-G solvation = -29.820845 kcal Electronic energy + Delta-G solvation = -23870.026311 eV Core-core repulsion = 20531.065973 eV Total energy + Delta-G solvation = -3338.960338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39840 -38.34530 -36.82278 -34.47700 -34.17814 -32.62169 -32.27646 -30.18600 -26.60891 -25.99735 -25.60345 -25.03539 -22.17129 -21.45965 -21.13235 -19.33926 -19.12079 -17.53001 -16.70966 -16.24682 -15.96976 -15.36719 -14.94917 -14.73832 -14.68812 -14.17649 -13.94866 -13.52559 -13.22110 -12.94427 -12.61810 -12.36559 -12.25377 -11.82498 -11.75318 -11.70716 -11.50873 -11.44576 -11.02319 -10.93511 -10.78907 -10.71308 -10.52533 -10.33190 -10.06172 -9.50234 -9.29461 -8.85560 -8.80281 -8.36784 -8.19116 -7.78265 -6.15224 -4.15734 2.98938 3.18967 3.29804 3.31718 3.66689 3.81356 4.28445 4.43269 4.66322 4.88730 4.92145 5.03098 5.07044 5.15992 5.32580 5.40803 5.48903 5.52116 5.62263 5.69267 5.76641 5.87808 5.92738 5.98666 6.05704 6.29040 6.37033 6.51207 6.55340 6.59016 6.67469 6.84228 6.93627 7.00883 7.11454 7.25766 7.41096 7.53217 7.63069 7.96994 8.32536 8.63178 8.80092 9.26917 9.41942 10.85892 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014831 B = 0.006255 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.457792 B = 4475.167625 C = 4839.560720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.131 3.869 3 H 0.071 0.929 4 C 0.051 3.949 5 O -0.380 6.380 6 C 0.071 3.929 7 H 0.066 0.934 8 C -0.143 4.143 9 C 0.085 3.915 10 N -0.639 5.639 11 C 0.703 3.297 12 O -0.588 6.588 13 N -0.722 5.722 14 C 0.160 3.840 15 C 0.040 3.960 16 C -0.499 4.499 17 H 0.063 0.937 18 C 0.076 3.924 19 N -0.863 5.863 20 Si 0.886 3.114 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.282 1.282 24 C -0.192 4.192 25 C -0.212 4.212 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.388 0.612 37 H 0.027 0.973 38 H 0.121 0.879 39 H 0.265 0.735 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.096 7.238 -8.088 13.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.027 3.973 3 H 0.089 0.911 4 C -0.026 4.026 5 O -0.299 6.299 6 C 0.013 3.987 7 H 0.084 0.916 8 C -0.200 4.200 9 C -0.039 4.039 10 N -0.379 5.379 11 C 0.405 3.595 12 O -0.467 6.467 13 N -0.376 5.376 14 C 0.038 3.962 15 C 0.039 3.961 16 C -0.536 4.536 17 H 0.081 0.919 18 C -0.128 4.128 19 N -0.499 5.499 20 Si 0.713 3.287 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.231 4.231 25 C -0.249 4.249 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.223 0.777 37 H 0.045 0.955 38 H 0.138 0.862 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.147 7.549 -8.323 13.317 hybrid contribution 0.549 -1.039 -0.168 1.187 sum 7.696 6.509 -8.492 13.180 Atomic orbital electron populations 1.22058 0.91878 1.05326 0.99887 1.21673 0.96572 0.95138 0.83950 0.91142 1.23109 0.81323 1.00450 0.97750 1.87917 1.22003 1.72085 1.47926 1.22514 0.96166 0.94059 0.85979 0.91626 1.21730 0.92506 1.02798 1.02998 1.22303 0.82023 1.00794 0.98783 1.47383 1.07044 1.63260 1.20256 1.15917 0.84365 0.79465 0.79723 1.90895 1.16766 1.60530 1.78532 1.45474 1.12412 1.53323 1.26406 1.21189 0.92817 0.93969 0.88268 1.19180 0.94976 0.94734 0.87225 1.20474 1.04570 0.97746 1.30796 0.91914 1.24953 0.94562 0.97130 0.96167 1.69822 1.00513 1.39273 1.40303 0.86639 0.79013 0.82220 0.80804 1.19562 1.20967 1.20797 1.22929 0.97530 1.01218 1.01407 1.22883 0.93199 0.98431 1.10421 0.90545 0.94072 0.90626 0.92601 0.87962 0.90518 0.91584 0.91676 0.91018 0.89105 0.77667 0.95462 0.86188 0.92507 0.91533 0.90139 0.90565 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 7.70 37.16 0.29 -1.80 16 2 C 0.13 1.89 3.68 -67.42 -0.25 1.64 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 4 C 0.05 0.65 6.25 37.31 0.23 0.89 16 5 O -0.38 -5.11 10.39 -35.23 -0.37 -5.48 16 6 C 0.07 0.91 3.40 -26.58 -0.09 0.81 16 7 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 8 C -0.14 -1.39 9.57 37.16 0.36 -1.04 16 9 C 0.09 1.14 5.93 -3.53 -0.02 1.12 16 10 N -0.64 -10.53 3.02 -170.42 -0.51 -11.04 16 11 C 0.70 14.38 8.02 -86.91 -0.70 13.69 16 12 O -0.59 -13.66 12.20 5.29 0.06 -13.60 16 13 N -0.72 -14.93 5.46 -65.22 -0.36 -15.29 16 14 C 0.16 3.81 5.30 -4.04 -0.02 3.79 16 15 C 0.04 0.94 1.73 -155.66 -0.27 0.67 16 16 C -0.50 -12.84 8.99 -34.44 -0.31 -13.15 16 17 H 0.06 1.61 7.89 -52.48 -0.41 1.20 16 18 C 0.08 2.00 5.10 -17.82 -0.09 1.91 16 19 N -0.86 -23.68 10.99 55.43 0.61 -23.07 16 20 Si 0.89 20.29 29.58 -169.99 -5.03 15.26 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.19 -4.25 9.88 -26.73 -0.26 -4.51 16 25 C -0.21 -4.32 9.93 -26.73 -0.27 -4.58 16 26 H 0.08 1.32 6.99 -51.93 -0.36 0.95 16 27 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.07 1.42 6.58 -51.93 -0.34 1.08 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.59 8.14 -51.94 -0.42 0.16 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.20 5.65 -51.93 -0.29 0.91 16 36 H 0.39 7.26 5.98 -40.82 -0.24 7.02 16 37 H 0.03 0.65 7.97 -51.93 -0.41 0.24 16 38 H 0.12 3.29 5.36 -51.93 -0.28 3.01 16 39 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 40 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 41 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 42 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -29.27 338.93 -8.86 -38.13 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -6.97 Total: 10.53 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.40 Total: -0.56 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.26 Total: -49.40 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.30 Total: -19.07 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.27 -8.86 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336616052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.311 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds