Wall clock time and date at job start Tue Mar 31 2020 05:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.51341 * 2 1 4 4 C 1.53293 * 109.51232 * 120.11027 * 2 1 3 5 5 N 1.47154 * 108.41762 * 172.20834 * 4 2 1 6 6 C 1.34773 * 120.98583 * 129.44990 * 5 4 2 7 7 O 1.21590 * 120.00013 * 174.97778 * 6 5 4 8 8 N 1.34778 * 119.99896 * 354.97528 * 6 5 4 9 9 C 1.46497 * 120.00083 * 184.63339 * 8 6 5 10 10 C 1.53001 * 109.47523 * 184.86815 * 9 8 6 11 11 C 1.50702 * 115.54439 * 305.46524 * 10 9 8 12 12 H 1.07998 * 119.99652 * 144.63906 * 11 10 9 13 13 C 1.37878 * 120.00359 * 324.63225 * 11 10 9 14 14 N 1.31523 * 119.99771 * 2.99843 * 13 11 10 15 15 Si 1.86798 * 120.00186 * 182.99508 * 13 11 10 16 16 H 1.48501 * 109.47162 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47204 * 120.00249 * 15 13 11 18 18 H 1.48500 * 109.47256 * 240.00168 * 15 13 11 19 19 C 1.52998 * 117.50205 * 159.79398 * 10 9 8 20 20 C 1.53000 * 117.50165 * 91.12802 * 10 9 8 21 21 C 1.47166 * 118.02087 * 309.52461 * 5 4 2 22 22 H 1.09002 * 109.71310 * 170.22960 * 21 5 4 23 23 C 1.52997 * 109.64979 * 290.74664 * 21 5 4 24 24 C 1.53296 * 108.41452 * 50.47376 * 21 5 4 25 25 O 1.42961 * 109.51082 * 239.84955 * 2 1 3 26 26 H 1.08997 * 109.46757 * 299.89388 * 1 2 3 27 27 H 1.09003 * 109.47148 * 59.89523 * 1 2 3 28 28 H 1.09003 * 109.47336 * 179.89190 * 1 2 3 29 29 H 1.09004 * 109.67622 * 291.94448 * 4 2 1 30 30 H 1.08997 * 109.68534 * 52.45936 * 4 2 1 31 31 H 0.97005 * 119.99934 * 4.63200 * 8 6 5 32 32 H 1.08999 * 109.47275 * 304.86969 * 9 8 6 33 33 H 1.08999 * 109.47489 * 64.86569 * 9 8 6 34 34 H 0.97000 * 119.99451 * 185.00196 * 14 13 11 35 35 H 1.09001 * 117.49846 * 0.02562 * 19 10 9 36 36 H 1.08998 * 117.49769 * 145.01950 * 19 10 9 37 37 H 1.08990 * 117.50216 * 214.98327 * 20 10 9 38 38 H 1.09002 * 117.49198 * 0.02562 * 20 10 9 39 39 H 1.09002 * 109.47189 * 178.94522 * 23 21 5 40 40 H 1.09001 * 109.47519 * 298.94386 * 23 21 5 41 41 H 1.08995 * 109.47128 * 58.94604 * 23 21 5 42 42 H 1.09005 * 109.50695 * 187.79438 * 24 21 5 43 43 H 1.08997 * 109.55770 * 67.66642 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7249 1.2499 5 7 3.5011 -0.8766 1.1344 6 6 4.3192 -0.5040 2.1385 7 8 5.5132 -0.7208 2.0623 8 7 3.8138 0.1092 3.2271 9 6 4.7128 0.6051 4.2721 10 6 3.8870 1.1440 5.4419 11 6 2.8632 2.1912 5.0868 12 1 1.9191 2.2229 5.6104 13 6 3.1316 3.1090 4.0934 14 7 4.2563 3.0343 3.4157 15 14 1.8981 4.4584 3.7103 16 1 0.7228 4.3242 4.6080 17 1 2.5330 5.7841 3.9216 18 1 1.4580 4.3400 2.2969 19 6 4.5816 1.2669 6.7996 20 6 3.5392 0.1697 6.5692 21 6 4.0406 -1.4459 -0.1109 22 1 5.1252 -1.3383 -0.1248 23 6 3.6685 -2.9271 -0.2029 24 6 3.4312 -0.6860 -1.2946 25 8 2.0075 -0.6768 -1.1652 26 1 -0.3633 0.5122 0.8909 27 1 -0.3633 0.5155 -0.8891 28 1 -0.3634 -1.0277 -0.0019 29 1 1.8031 -0.1391 2.1376 30 1 1.5752 -1.7072 1.3217 31 1 2.8547 0.2221 3.3188 32 1 5.3487 -0.2086 4.6206 33 1 5.3343 1.4041 3.8676 34 1 4.4785 3.7211 2.7677 35 1 5.6270 0.9642 6.8594 36 1 4.2977 2.1049 7.4361 37 1 2.5702 0.2864 7.0542 38 1 3.8991 -0.8551 6.4775 39 1 4.0533 -3.3412 -1.1349 40 1 4.1034 -3.4641 0.6401 41 1 2.5838 -3.0314 -0.1795 42 1 3.7090 -1.1796 -2.2259 43 1 3.8029 0.3387 -1.3006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336616053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:00 Heat of formation + Delta-G solvation = -42.082356 kcal Electronic energy + Delta-G solvation = -23986.096380 eV Core-core repulsion = 20646.604343 eV Total energy + Delta-G solvation = -3339.492038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.17676 -38.22786 -36.70170 -34.48359 -33.78085 -32.59613 -32.15375 -30.05915 -26.31379 -26.26269 -25.79774 -25.09962 -22.24122 -21.27884 -20.70729 -19.30622 -18.65636 -17.79217 -16.56726 -16.16857 -15.70186 -15.34785 -14.91207 -14.74351 -14.49595 -14.04885 -13.78504 -13.51853 -13.06916 -12.85625 -12.55120 -12.25906 -12.18380 -12.06856 -11.78386 -11.63015 -11.41794 -11.28797 -11.15206 -11.02432 -10.75803 -10.53409 -10.36500 -10.28061 -9.87086 -9.71601 -9.25944 -8.97654 -8.87840 -8.32986 -8.23465 -7.64942 -6.02896 -4.23562 3.13961 3.16713 3.26605 3.28873 3.78854 4.01499 4.24960 4.61863 4.80569 4.95127 5.02035 5.14275 5.16481 5.23862 5.45368 5.46212 5.57740 5.61801 5.68017 5.71559 5.77754 5.87955 6.00533 6.03722 6.11280 6.16994 6.30608 6.33375 6.54307 6.62417 6.74971 6.82235 6.91494 7.09195 7.22751 7.25304 7.53566 7.62663 7.77040 7.97317 8.29513 8.72928 8.92943 9.39542 9.46539 10.85320 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015698 B = 0.006804 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.185133 B = 4114.151574 C = 5096.233652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.065 0.935 4 C 0.086 3.914 5 N -0.635 5.635 6 C 0.706 3.294 7 O -0.608 6.608 8 N -0.699 5.699 9 C 0.182 3.818 10 C 0.035 3.965 11 C -0.496 4.496 12 H 0.061 0.939 13 C 0.074 3.926 14 N -0.865 5.865 15 Si 0.890 3.110 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.283 1.283 19 C -0.197 4.197 20 C -0.212 4.212 21 C 0.123 3.877 22 H 0.105 0.895 23 C -0.153 4.153 24 C 0.054 3.946 25 O -0.378 6.378 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.394 0.606 32 H 0.019 0.981 33 H 0.110 0.890 34 H 0.261 0.739 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.488 -6.885 -7.529 11.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.014 3.986 3 H 0.083 0.917 4 C -0.038 4.038 5 N -0.375 5.375 6 C 0.407 3.593 7 O -0.488 6.488 8 N -0.351 5.351 9 C 0.059 3.941 10 C 0.034 3.966 11 C -0.533 4.533 12 H 0.079 0.921 13 C -0.131 4.131 14 N -0.501 5.501 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.236 4.236 20 C -0.249 4.249 21 C 0.018 3.982 22 H 0.123 0.877 23 C -0.212 4.212 24 C -0.023 4.023 25 O -0.297 6.297 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.038 0.962 33 H 0.127 0.873 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.119 0.881 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.637 -7.017 -7.856 11.509 hybrid contribution -0.877 1.034 0.201 1.370 sum -5.513 -5.984 -7.655 11.172 Atomic orbital electron populations 1.21730 0.92530 1.02888 1.02872 1.22470 0.95190 0.95709 0.85196 0.91706 1.22253 0.81505 1.00940 0.99135 1.47300 1.05437 1.68220 1.16528 1.15845 0.84596 0.78699 0.80116 1.90813 1.13927 1.63210 1.80854 1.44984 1.10762 1.59509 1.19873 1.20952 0.90978 0.96347 0.85823 1.19261 0.96665 0.95059 0.85634 1.20557 1.01096 1.13187 1.18456 0.92071 1.25011 0.95614 0.97531 0.94911 1.69918 1.22868 1.32817 1.24486 0.86569 0.81459 0.82137 0.78104 1.19694 1.20839 1.20940 1.22933 0.95296 1.00179 1.05189 1.22949 0.99107 0.94006 1.08853 1.21576 1.00328 0.92909 0.83344 0.87717 1.22013 1.02117 0.95310 1.01714 1.22989 0.81246 1.00095 0.98001 1.87886 1.20907 1.77480 1.43445 0.90581 0.91717 0.91742 0.89000 0.91262 0.76984 0.96229 0.87266 0.92826 0.91431 0.90217 0.90671 0.91361 0.91936 0.92420 0.92156 0.88101 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.57 37.16 0.36 -1.23 16 2 C 0.07 1.02 3.40 -26.58 -0.09 0.93 16 3 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.09 1.28 5.52 -3.53 -0.02 1.26 16 5 N -0.64 -11.18 2.71 -170.42 -0.46 -11.64 16 6 C 0.71 15.43 8.31 -86.92 -0.72 14.71 16 7 O -0.61 -15.25 15.82 5.29 0.08 -15.16 16 8 N -0.70 -15.42 5.08 -65.23 -0.33 -15.76 16 9 C 0.18 4.39 4.62 -4.04 -0.02 4.38 16 10 C 0.03 0.81 2.06 -155.66 -0.32 0.49 16 11 C -0.50 -12.35 8.31 -34.44 -0.29 -12.63 16 12 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 13 C 0.07 1.84 5.31 -17.82 -0.09 1.75 16 14 N -0.86 -22.64 10.18 55.43 0.56 -22.07 16 15 Si 0.89 19.58 29.54 -169.99 -5.02 14.56 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 19 C -0.20 -4.31 9.96 -26.69 -0.27 -4.57 16 20 C -0.21 -4.43 9.93 -26.69 -0.26 -4.69 16 21 C 0.12 1.86 3.21 -67.42 -0.22 1.64 16 22 H 0.10 1.74 7.12 -51.93 -0.37 1.37 16 23 C -0.15 -1.95 9.24 37.16 0.34 -1.61 16 24 C 0.05 0.72 6.36 37.31 0.24 0.96 16 25 O -0.38 -5.31 10.03 -35.23 -0.35 -5.66 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.43 5.66 -51.93 -0.29 1.14 16 30 H 0.07 0.93 7.64 -51.93 -0.40 0.53 16 31 H 0.39 8.29 5.45 -40.82 -0.22 8.06 16 32 H 0.02 0.47 8.05 -51.93 -0.42 0.06 16 33 H 0.11 2.98 5.90 -51.93 -0.31 2.68 16 34 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.76 7.20 -51.93 -0.37 0.39 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 341.35 15.07 5.14 5.14 Total: -1.00 -28.69 341.35 -8.74 -37.43 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -7.00 Total: 11.78 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.36 Total: 1.38 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.23 Total: -49.47 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.27 Total: -20.83 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.69 -8.74 -37.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336616053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.651 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds