Wall clock time and date at job start Tue Mar 31 2020 05:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.55766 * 2 1 4 4 C 1.52882 * 109.58526 * 240.00417 * 2 1 3 5 5 N 1.47146 * 108.61088 * 187.92230 * 4 2 1 6 6 C 1.34771 * 120.98533 * 230.49909 * 5 4 2 7 7 O 1.21592 * 120.00361 * 185.12985 * 6 5 4 8 8 N 1.34781 * 119.99984 * 5.13616 * 6 5 4 9 9 C 1.46494 * 120.00441 * 174.94111 * 8 6 5 10 10 C 1.52998 * 109.47535 * 184.59749 * 9 8 6 11 11 C 1.50701 * 115.54936 * 305.67688 * 10 9 8 12 12 H 1.08006 * 119.99846 * 144.23211 * 11 10 9 13 13 C 1.37878 * 120.00254 * 324.23283 * 11 10 9 14 14 N 1.31511 * 119.99524 * 3.23817 * 13 11 10 15 15 Si 1.86795 * 120.00240 * 183.24111 * 13 11 10 16 16 H 1.48496 * 109.47330 * 59.99454 * 15 13 11 17 17 H 1.48500 * 109.47150 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46864 * 299.99622 * 15 13 11 19 19 C 1.53001 * 117.49935 * 160.00501 * 10 9 8 20 20 C 1.53001 * 117.49726 * 91.34329 * 10 9 8 21 21 C 1.47155 * 118.03390 * 50.22808 * 5 4 2 22 22 H 1.09000 * 109.68165 * 69.47706 * 21 5 4 23 23 C 1.53000 * 109.68187 * 189.99276 * 21 5 4 24 24 C 1.53293 * 108.38460 * 309.71561 * 21 5 4 25 25 O 1.42957 * 109.22567 * 52.30453 * 24 21 5 26 26 H 1.09001 * 109.47066 * 299.87722 * 1 2 3 27 27 H 1.08994 * 109.47122 * 59.87625 * 1 2 3 28 28 H 1.09003 * 109.46847 * 179.87680 * 1 2 3 29 29 H 1.09003 * 109.61451 * 68.09956 * 4 2 1 30 30 H 1.09001 * 109.52228 * 307.68690 * 4 2 1 31 31 H 0.97000 * 119.99230 * 354.66237 * 8 6 5 32 32 H 1.09002 * 109.47140 * 304.60460 * 9 8 6 33 33 H 1.09003 * 109.46888 * 64.59640 * 9 8 6 34 34 H 0.97001 * 120.00108 * 185.00694 * 14 13 11 35 35 H 1.08996 * 117.49897 * 359.97438 * 19 10 9 36 36 H 1.08998 * 117.49747 * 145.03006 * 19 10 9 37 37 H 1.08998 * 117.50065 * 214.98051 * 20 10 9 38 38 H 1.09006 * 117.49972 * 359.97438 * 20 10 9 39 39 H 1.09000 * 109.47487 * 49.50814 * 23 21 5 40 40 H 1.09001 * 109.47377 * 169.50909 * 23 21 5 41 41 H 1.08999 * 109.47135 * 289.51075 * 23 21 5 42 42 H 1.09001 * 109.50989 * 172.22937 * 24 21 5 43 43 H 1.09004 * 109.51302 * 292.32684 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0425 -0.7201 -1.2474 5 7 3.5012 -0.8763 -1.1336 6 6 4.3194 -0.5036 -2.1375 7 8 5.5125 -0.7257 -2.0638 8 7 3.8150 0.1155 -3.2233 9 6 4.7152 0.6196 -4.2634 10 6 3.9037 1.3736 -5.3187 11 6 2.7616 0.6051 -5.9319 12 1 1.8465 1.1153 -6.1941 13 6 2.8849 -0.7494 -6.1583 14 7 3.9741 -1.3826 -5.7811 15 14 1.5050 -1.6850 -7.0009 16 1 1.2736 -1.1149 -8.3524 17 1 1.8808 -3.1163 -7.1244 18 1 0.2633 -1.5676 -6.1949 19 6 4.6548 2.3589 -6.2164 20 6 3.7177 2.8797 -5.1238 21 6 4.0406 -1.4458 0.1115 22 1 3.7762 -2.5012 0.1771 23 6 5.5630 -1.2940 0.1303 24 6 3.4312 -0.6854 1.2948 25 8 2.0076 -0.6763 1.1656 26 1 -0.3633 0.5119 0.8911 27 1 -0.3633 0.5157 -0.8888 28 1 -0.3633 -1.0277 -0.0022 29 1 1.8043 -0.1315 -2.1335 30 1 1.5728 -1.7010 -1.3205 31 1 2.8557 0.2237 -3.3180 32 1 5.4455 1.2940 -3.8162 33 1 5.2329 -0.2171 -4.7325 34 1 4.0926 -2.3191 -6.0044 35 1 5.7270 2.4703 -6.0549 36 1 4.3226 2.4517 -7.2504 37 1 2.7695 3.3147 -5.4394 38 1 4.1731 3.3333 -4.2434 39 1 5.8286 -0.2650 -0.1120 40 1 5.9407 -1.5428 1.1221 41 1 6.0043 -1.9660 -0.6057 42 1 3.7091 -1.1786 2.2263 43 1 3.8037 0.3390 1.3000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336616054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:02 Heat of formation + Delta-G solvation = -29.328851 kcal Electronic energy + Delta-G solvation = -23939.301647 eV Core-core repulsion = 20600.362643 eV Total energy + Delta-G solvation = -3338.939004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27701 -38.23409 -36.77033 -34.36380 -34.06993 -32.58678 -32.15406 -30.09535 -26.50021 -25.89314 -25.54210 -25.04196 -22.07880 -21.33574 -21.14006 -19.27970 -18.97175 -17.34339 -16.65145 -16.19184 -15.96521 -15.20739 -14.89103 -14.77065 -14.59043 -14.08764 -13.80052 -13.52511 -12.92307 -12.86814 -12.53361 -12.39119 -12.18902 -11.80166 -11.67750 -11.64014 -11.42888 -11.31018 -11.10266 -10.88231 -10.78004 -10.65203 -10.53565 -10.27223 -10.00162 -9.64904 -9.03076 -8.86794 -8.64802 -8.29516 -8.17535 -7.64305 -6.00963 -4.21898 3.14230 3.19976 3.28419 3.28865 3.71912 4.01446 4.27006 4.59535 4.76236 4.95709 4.99175 5.10873 5.12787 5.23648 5.38751 5.45339 5.54973 5.55966 5.71922 5.76407 5.82641 5.93870 5.97797 6.03213 6.11804 6.30059 6.43200 6.54464 6.60918 6.66145 6.73004 6.86947 6.97484 7.10107 7.16318 7.25001 7.55883 7.63666 7.78222 7.98995 8.30323 8.73968 8.93810 9.41379 9.49325 10.87542 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015853 B = 0.006099 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.753600 B = 4590.048859 C = 5045.975059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 H 0.062 0.938 4 C 0.085 3.915 5 N -0.639 5.639 6 C 0.704 3.296 7 O -0.597 6.597 8 N -0.700 5.700 9 C 0.183 3.817 10 C 0.036 3.964 11 C -0.499 4.499 12 H 0.060 0.940 13 C 0.074 3.926 14 N -0.863 5.863 15 Si 0.892 3.108 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.198 4.198 20 C -0.212 4.212 21 C 0.130 3.870 22 H 0.070 0.930 23 C -0.131 4.131 24 C 0.053 3.947 25 O -0.381 6.381 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.393 0.607 32 H 0.017 0.983 33 H 0.111 0.889 34 H 0.263 0.737 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.038 0.962 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.172 1.413 11.462 12.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.080 0.920 4 C -0.039 4.039 5 N -0.379 5.379 6 C 0.406 3.594 7 O -0.477 6.477 8 N -0.353 5.353 9 C 0.059 3.941 10 C 0.036 3.964 11 C -0.537 4.537 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.499 5.499 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.236 4.236 20 C -0.250 4.250 21 C 0.026 3.974 22 H 0.088 0.912 23 C -0.188 4.188 24 C -0.025 4.025 25 O -0.300 6.300 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.229 0.771 32 H 0.035 0.965 33 H 0.128 0.872 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.330 0.979 11.649 12.155 hybrid contribution -1.068 -0.302 -0.903 1.430 sum -4.397 0.677 10.747 11.631 Atomic orbital electron populations 1.21734 0.92394 1.03170 1.02790 1.22409 0.95314 0.95425 0.85326 0.91994 1.22206 0.81435 1.01484 0.98802 1.47317 1.05405 1.68581 1.16610 1.15881 0.84750 0.78730 0.80064 1.90856 1.14138 1.62109 1.80638 1.45081 1.10713 1.59819 1.19693 1.20926 0.89896 0.97889 0.85341 1.19243 0.96455 0.85804 0.94935 1.20464 0.99105 0.92338 1.41756 0.92205 1.25008 0.95944 0.97326 0.94762 1.69885 1.26080 1.10803 1.43110 0.86662 0.82211 0.78888 0.80295 1.20196 1.21241 1.20162 1.22936 0.95575 1.09476 0.95654 1.22946 1.00344 1.01697 0.99978 1.21648 0.95795 0.96865 0.83107 0.91238 1.22042 0.92111 1.04867 0.99807 1.23095 0.80912 1.00230 0.98260 1.87910 1.21072 1.77601 1.43396 0.91674 0.90532 0.91616 0.88930 0.91130 0.77082 0.96455 0.87164 0.92641 0.91461 0.90219 0.90704 0.91435 0.91354 0.94357 0.89959 0.88108 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.57 37.16 0.36 -1.11 16 2 C 0.07 0.95 3.39 -26.79 -0.09 0.86 16 3 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.08 1.26 5.90 -3.75 -0.02 1.24 16 5 N -0.64 -11.16 3.03 -170.68 -0.52 -11.68 16 6 C 0.70 15.03 8.07 -86.92 -0.70 14.33 16 7 O -0.60 -14.21 12.12 5.28 0.06 -14.15 16 8 N -0.70 -15.29 5.09 -65.23 -0.33 -15.62 16 9 C 0.18 4.36 4.61 -4.05 -0.02 4.34 16 10 C 0.04 0.85 2.06 -155.66 -0.32 0.53 16 11 C -0.50 -12.50 8.29 -34.44 -0.29 -12.79 16 12 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 13 C 0.07 1.88 5.31 -17.82 -0.09 1.79 16 14 N -0.86 -22.90 10.20 55.43 0.57 -22.33 16 15 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 C -0.20 -4.30 9.96 -26.69 -0.27 -4.57 16 20 C -0.21 -4.40 9.92 -26.69 -0.26 -4.66 16 21 C 0.13 1.97 3.69 -67.42 -0.25 1.72 16 22 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 23 C -0.13 -2.05 7.65 37.16 0.28 -1.77 16 24 C 0.05 0.67 6.27 37.31 0.23 0.90 16 25 O -0.38 -5.18 10.39 -35.23 -0.37 -5.55 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.41 5.66 -51.93 -0.29 1.11 16 30 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 31 H 0.39 8.25 5.44 -40.82 -0.22 8.03 16 32 H 0.02 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.11 3.00 5.92 -51.93 -0.31 2.70 16 34 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 37 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.07 1.21 6.85 -51.93 -0.36 0.85 16 40 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 41 H 0.08 1.51 6.74 -51.93 -0.35 1.16 16 42 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -28.20 337.03 -8.96 -37.16 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -6.99 Total: 11.42 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -1.44 Total: 0.81 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.28 Total: -49.63 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.30 Total: -19.70 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.20 -8.96 -37.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336616054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.827 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds