Wall clock time and date at job start Tue Mar 31 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.47149 * 2 1 4 4 C 1.46503 * 119.99925 * 90.00401 * 3 2 1 5 5 C 1.50709 * 109.46557 * 269.99631 * 4 3 2 6 6 H 1.07990 * 120.00295 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99694 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99867 * 359.72534 * 7 5 4 9 9 Si 1.86791 * 119.99985 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47279 * 269.72821 * 9 7 5 11 11 H 1.48506 * 109.47160 * 29.72275 * 9 7 5 12 12 H 1.48504 * 109.47427 * 149.72622 * 9 7 5 13 13 C 1.34778 * 119.99995 * 269.99617 * 3 2 1 14 14 O 1.21283 * 119.99789 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99880 * 0.02562 * 13 3 2 16 16 C 1.53004 * 109.46758 * 179.97438 * 15 13 3 17 17 H 1.09005 * 109.59995 * 331.12367 * 16 15 13 18 18 C 1.52985 * 109.60677 * 91.45315 * 16 15 13 19 19 C 1.51784 * 110.87655 * 33.29107 * 18 16 15 20 20 C 1.51789 * 113.81052 * 67.00105 * 19 18 16 21 21 C 1.53064 * 110.74306 * 293.18228 * 20 19 18 22 22 C 1.51422 * 108.49369 * 84.92277 * 21 20 19 23 23 O 1.21283 * 119.89028 * 108.75203 * 22 21 20 24 24 N 1.33366 * 120.21327 * 288.78151 * 22 21 20 25 25 H 1.09000 * 109.46760 * 299.99815 * 1 2 3 26 26 H 1.09005 * 109.46528 * 60.00149 * 1 2 3 27 27 H 1.08998 * 109.47110 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47241 * 240.00006 * 2 1 3 29 29 H 1.09005 * 109.46773 * 120.00344 * 2 1 3 30 30 H 1.08998 * 109.47332 * 149.99809 * 4 3 2 31 31 H 1.08990 * 109.47361 * 29.99181 * 4 3 2 32 32 H 0.97002 * 120.00344 * 0.27770 * 8 7 5 33 33 H 1.08995 * 109.47022 * 299.99507 * 15 13 3 34 34 H 1.08995 * 109.46990 * 60.00224 * 15 13 3 35 35 H 1.09002 * 109.19607 * 153.65339 * 18 16 15 36 36 H 1.09007 * 109.19715 * 272.93276 * 18 16 15 37 37 H 1.09005 * 108.61040 * 188.11528 * 19 18 16 38 38 H 1.08999 * 108.61588 * 305.87243 * 19 18 16 39 39 H 1.08996 * 109.22327 * 53.50682 * 20 19 18 40 40 H 1.09005 * 109.22036 * 172.86190 * 20 19 18 41 41 H 1.08999 * 109.63314 * 204.62857 * 21 20 19 42 42 H 1.09000 * 109.63528 * 325.21968 * 21 20 19 43 43 H 0.97010 * 119.78307 * 179.72358 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 1.0067 2.7822 1.7038 6 1 0.1160 2.7254 1.0958 7 6 0.9950 3.5048 2.8780 8 7 2.0781 3.5695 3.6211 9 14 -0.5618 4.3848 3.4176 10 1 -0.5673 5.7637 2.8664 11 1 -1.7477 3.6460 2.9145 12 1 -0.6081 4.4443 4.9007 13 6 2.2431 2.0165 -1.1672 14 8 2.6469 3.1601 -1.1672 15 6 1.9914 1.3062 -2.4723 16 6 2.3225 2.2438 -3.6352 17 1 2.1621 3.2775 -3.3286 18 6 3.7826 2.0520 -4.0497 19 6 4.2136 0.6091 -3.8599 20 6 3.5183 -0.3659 -4.7926 21 6 2.0255 -0.4570 -4.4669 22 6 1.3074 0.6646 -5.1875 23 8 0.5910 0.4141 -6.1336 24 7 1.4607 1.9270 -4.7856 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.0646 2.7984 1.1385 31 1 2.5506 1.3451 2.0284 32 1 2.8865 3.1122 3.3411 33 1 2.6213 0.4186 -2.5302 34 1 0.9434 1.0125 -2.5299 35 1 3.8961 2.3249 -5.0989 36 1 4.4157 2.6981 -3.4415 37 1 5.2889 0.5425 -4.0257 38 1 4.0045 0.3159 -2.8311 39 1 3.6412 -0.0279 -5.8215 40 1 3.9703 -1.3518 -4.6830 41 1 1.6352 -1.4175 -4.8033 42 1 1.8783 -0.3549 -3.3918 43 1 1.0008 2.6411 -5.2543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337060877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:17 Heat of formation + Delta-G solvation = -64.414217 kcal Electronic energy + Delta-G solvation = -23772.127988 eV Core-core repulsion = 20431.667568 eV Total energy + Delta-G solvation = -3340.460420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07754 -39.08829 -37.15682 -35.52555 -34.07377 -33.10287 -31.37376 -30.16588 -29.87335 -26.87627 -25.44679 -23.98764 -22.95623 -22.80129 -20.39273 -19.72107 -18.45587 -17.70182 -17.14233 -16.71261 -16.25355 -15.70711 -15.20586 -14.58049 -14.39498 -14.14581 -13.82404 -13.72803 -13.67821 -13.39506 -13.11461 -12.90281 -12.55524 -12.19608 -12.01741 -11.96891 -11.51318 -11.46556 -11.29136 -11.04767 -10.94635 -10.87024 -10.68923 -10.52667 -10.26239 -10.15385 -9.82310 -9.23227 -9.17665 -9.02973 -8.41858 -7.73734 -6.41886 -4.14138 2.58368 3.17893 3.19960 3.41239 3.43856 3.58724 3.76475 4.30384 4.48652 4.52480 4.55134 4.64769 4.85238 4.93735 5.02553 5.15694 5.22251 5.31099 5.33433 5.38206 5.43928 5.56015 5.65332 5.67328 5.72573 5.73968 5.84819 5.98336 6.01324 6.02224 6.12736 6.18802 6.66074 6.73697 6.74656 7.05286 7.21988 7.31750 7.99097 8.17803 8.19332 8.39122 8.73103 8.88864 9.55141 10.95265 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024518 B = 0.004577 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.760977 B = 6116.708776 C = 6223.331717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.111 3.889 3 N -0.592 5.592 4 C 0.236 3.764 5 C -0.603 4.603 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 1.072 2.928 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.284 1.284 13 C 0.509 3.491 14 O -0.541 6.541 15 C -0.184 4.184 16 C 0.148 3.852 17 H 0.117 0.883 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.110 4.110 21 C -0.173 4.173 22 C 0.521 3.479 23 O -0.561 6.561 24 N -0.718 5.718 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.021 0.979 32 H 0.267 0.733 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.738 -9.397 -13.513 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.013 4.013 3 N -0.323 5.323 4 C 0.116 3.884 5 C -0.642 4.642 6 H 0.071 0.929 7 C -0.184 4.184 8 N -0.546 5.546 9 Si 0.900 3.100 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.295 3.705 14 O -0.419 6.419 15 C -0.224 4.224 16 C 0.043 3.957 17 H 0.135 0.865 18 C -0.169 4.169 19 C -0.172 4.172 20 C -0.148 4.148 21 C -0.212 4.212 22 C 0.308 3.692 23 O -0.440 6.440 24 N -0.369 5.369 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.131 0.869 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.056 -8.136 -12.669 15.196 hybrid contribution 0.339 -0.720 -1.296 1.521 sum 2.396 -8.856 -13.964 16.708 Atomic orbital electron populations 1.22236 0.96076 1.01112 1.03520 1.21409 0.94821 0.83471 1.01602 1.48055 1.63618 1.13253 1.07376 1.19364 0.97965 0.92173 0.78903 1.22259 0.97746 1.34663 1.09499 0.92884 1.25775 1.03275 0.96025 0.93367 1.70777 1.02199 1.42160 1.39495 0.83496 0.74085 0.76180 0.76216 1.21395 1.21555 1.20938 1.20122 0.78640 0.86738 0.85001 1.90660 1.46655 1.17559 1.87033 1.23013 1.04409 1.01193 0.93748 1.21188 0.89548 1.01293 0.83628 0.86513 1.21754 0.95736 0.97052 1.02387 1.21348 1.00685 0.94783 1.00363 1.21209 0.93065 1.00236 1.00303 1.22706 0.96628 0.97949 1.03931 1.20534 0.80518 0.84565 0.83612 1.90730 1.39903 1.83903 1.29438 1.46146 1.49269 1.08368 1.33166 0.90396 0.93288 0.92594 0.92085 0.90646 0.94859 0.96126 0.92221 0.85957 0.88592 0.91138 0.89715 0.91313 0.90869 0.91637 0.90566 0.88671 0.86855 0.76300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.24 37.16 0.38 -2.12 16 2 C 0.11 1.63 5.98 -4.04 -0.02 1.61 16 3 N -0.59 -11.48 2.46 -175.05 -0.43 -11.91 16 4 C 0.24 5.79 4.52 -5.19 -0.02 5.77 16 5 C -0.60 -16.49 8.92 -34.43 -0.31 -16.80 16 6 H 0.05 1.47 7.42 -52.49 -0.39 1.08 16 7 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 8 N -0.91 -27.07 13.65 55.43 0.76 -26.32 16 9 Si 1.07 25.14 29.90 -169.99 -5.08 20.06 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 C 0.51 9.42 7.67 -10.98 -0.08 9.34 16 14 O -0.54 -12.21 14.96 5.56 0.08 -12.12 16 15 C -0.18 -2.37 1.83 -27.88 -0.05 -2.42 16 16 C 0.15 1.79 3.12 -67.56 -0.21 1.58 16 17 H 0.12 1.63 6.90 -51.93 -0.36 1.27 16 18 C -0.13 -1.37 5.56 -27.36 -0.15 -1.52 16 19 C -0.13 -1.21 5.18 -27.96 -0.14 -1.35 16 20 C -0.11 -0.93 5.67 -27.31 -0.15 -1.08 16 21 C -0.17 -1.69 5.51 -27.50 -0.15 -1.84 16 22 C 0.52 6.70 6.67 -11.26 -0.08 6.63 16 23 O -0.56 -9.38 17.92 5.56 0.10 -9.28 16 24 N -0.72 -8.31 5.09 -53.45 -0.27 -8.58 16 25 H 0.08 1.40 7.26 -51.93 -0.38 1.02 16 26 H 0.05 0.71 7.22 -51.93 -0.37 0.33 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 29 H 0.08 1.09 7.89 -51.93 -0.41 0.68 16 30 H 0.03 0.92 7.29 -51.93 -0.38 0.54 16 31 H 0.02 0.51 7.75 -51.93 -0.40 0.11 16 32 H 0.27 7.88 7.22 -40.82 -0.29 7.58 16 33 H 0.12 1.29 1.99 -51.93 -0.10 1.19 16 34 H 0.10 1.22 6.49 -51.93 -0.34 0.88 16 35 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 36 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.68 5.56 -51.93 -0.29 0.40 16 39 H 0.06 0.60 7.86 -51.93 -0.41 0.19 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.88 8.13 -51.93 -0.42 0.45 16 42 H 0.11 1.03 3.64 -51.93 -0.19 0.84 16 43 H 0.40 4.31 8.91 -40.82 -0.36 3.95 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -33.99 330.23 -7.30 -41.30 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.34 Total: 3.65 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.10 Total: -1.76 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.05 Total: -46.81 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.18 Total: -21.41 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.99 -7.30 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337060877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.119 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds