Wall clock time and date at job start Tue Mar 31 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.47149 * 2 1 4 4 C 1.46503 * 119.99925 * 90.00401 * 3 2 1 5 5 C 1.50709 * 109.46557 * 269.99631 * 4 3 2 6 6 H 1.07990 * 120.00295 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99694 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99867 * 359.72534 * 7 5 4 9 9 Si 1.86791 * 119.99985 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47279 * 269.72821 * 9 7 5 11 11 H 1.48506 * 109.47160 * 29.72275 * 9 7 5 12 12 H 1.48504 * 109.47427 * 149.72622 * 9 7 5 13 13 C 1.34778 * 119.99995 * 269.99617 * 3 2 1 14 14 O 1.21283 * 119.99789 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99880 * 0.02562 * 13 3 2 16 16 C 1.53004 * 109.46758 * 179.97438 * 15 13 3 17 17 H 1.09005 * 109.59995 * 331.12367 * 16 15 13 18 18 C 1.52985 * 109.60677 * 91.45315 * 16 15 13 19 19 C 1.51784 * 110.87655 * 33.29107 * 18 16 15 20 20 C 1.51789 * 113.81052 * 67.00105 * 19 18 16 21 21 C 1.53064 * 110.74306 * 293.18228 * 20 19 18 22 22 C 1.51422 * 108.49369 * 84.92277 * 21 20 19 23 23 O 1.21283 * 119.89028 * 108.75203 * 22 21 20 24 24 N 1.33366 * 120.21327 * 288.78151 * 22 21 20 25 25 H 1.09000 * 109.46760 * 299.99815 * 1 2 3 26 26 H 1.09005 * 109.46528 * 60.00149 * 1 2 3 27 27 H 1.08998 * 109.47110 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47241 * 240.00006 * 2 1 3 29 29 H 1.09005 * 109.46773 * 120.00344 * 2 1 3 30 30 H 1.08998 * 109.47332 * 149.99809 * 4 3 2 31 31 H 1.08990 * 109.47361 * 29.99181 * 4 3 2 32 32 H 0.97002 * 120.00344 * 0.27770 * 8 7 5 33 33 H 1.08995 * 109.47022 * 299.99507 * 15 13 3 34 34 H 1.08995 * 109.46990 * 60.00224 * 15 13 3 35 35 H 1.09002 * 109.19607 * 153.65339 * 18 16 15 36 36 H 1.09007 * 109.19715 * 272.93276 * 18 16 15 37 37 H 1.09005 * 108.61040 * 188.11528 * 19 18 16 38 38 H 1.08999 * 108.61588 * 305.87243 * 19 18 16 39 39 H 1.08996 * 109.22327 * 53.50682 * 20 19 18 40 40 H 1.09005 * 109.22036 * 172.86190 * 20 19 18 41 41 H 1.08999 * 109.63314 * 204.62857 * 21 20 19 42 42 H 1.09000 * 109.63528 * 325.21968 * 21 20 19 43 43 H 0.97010 * 119.78307 * 179.72358 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 1.0067 2.7822 1.7038 6 1 0.1160 2.7254 1.0958 7 6 0.9950 3.5048 2.8780 8 7 2.0781 3.5695 3.6211 9 14 -0.5618 4.3848 3.4176 10 1 -0.5673 5.7637 2.8664 11 1 -1.7477 3.6460 2.9145 12 1 -0.6081 4.4443 4.9007 13 6 2.2431 2.0165 -1.1672 14 8 2.6469 3.1601 -1.1672 15 6 1.9914 1.3062 -2.4723 16 6 2.3225 2.2438 -3.6352 17 1 2.1621 3.2775 -3.3286 18 6 3.7826 2.0520 -4.0497 19 6 4.2136 0.6091 -3.8599 20 6 3.5183 -0.3659 -4.7926 21 6 2.0255 -0.4570 -4.4669 22 6 1.3074 0.6646 -5.1875 23 8 0.5910 0.4141 -6.1336 24 7 1.4607 1.9270 -4.7856 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.0646 2.7984 1.1385 31 1 2.5506 1.3451 2.0284 32 1 2.8865 3.1122 3.3411 33 1 2.6213 0.4186 -2.5302 34 1 0.9434 1.0125 -2.5299 35 1 3.8961 2.3249 -5.0989 36 1 4.4157 2.6981 -3.4415 37 1 5.2889 0.5425 -4.0257 38 1 4.0045 0.3159 -2.8311 39 1 3.6412 -0.0279 -5.8215 40 1 3.9703 -1.3518 -4.6830 41 1 1.6352 -1.4175 -4.8033 42 1 1.8783 -0.3549 -3.3918 43 1 1.0008 2.6411 -5.2543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337060877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:16 Heat of formation + Delta-G solvation = -88.195164 kcal Electronic energy + Delta-G solvation = -23773.159207 eV Core-core repulsion = 20431.667568 eV Total energy + Delta-G solvation = -3341.491639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.12604 -40.48220 -38.25604 -37.08114 -35.12961 -34.93689 -32.35924 -31.57545 -30.99942 -28.57677 -26.54972 -25.08204 -24.57467 -24.18118 -21.39788 -20.75586 -19.65373 -19.11196 -18.85287 -17.77812 -17.55590 -16.87507 -16.54196 -15.98091 -15.66142 -15.40826 -15.04637 -14.97187 -14.82017 -14.66215 -14.40048 -14.06975 -13.76572 -13.63884 -13.42489 -13.26813 -13.00992 -12.73334 -12.55383 -12.34737 -12.32806 -11.98067 -11.91900 -11.78440 -11.62479 -11.23719 -11.13994 -10.85375 -10.59162 -10.52925 -10.19715 -9.46964 -8.64471 -6.39634 1.49407 1.57533 1.59328 1.73570 1.76009 2.08562 2.43247 2.54481 3.13214 3.40535 3.52584 3.67176 3.76948 3.84281 4.02848 4.09298 4.21228 4.33037 4.37443 4.44445 4.46841 4.55893 4.63460 4.76842 4.82860 4.87980 4.92383 4.94879 4.99729 5.01992 5.09422 5.21128 5.22753 5.39909 5.45339 5.62048 5.77730 5.86750 6.19344 6.25451 6.50374 6.70227 7.19832 7.30700 7.43267 8.70429 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024518 B = 0.004577 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.760977 B = 6116.708776 C = 6223.331717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.102 3.898 3 N -0.598 5.598 4 C 0.246 3.754 5 C -0.606 4.606 6 H 0.046 0.954 7 C -0.031 4.031 8 N -0.935 5.935 9 Si 1.115 2.885 10 H -0.282 1.282 11 H -0.269 1.269 12 H -0.278 1.278 13 C 0.502 3.498 14 O -0.590 6.590 15 C -0.167 4.167 16 C 0.153 3.847 17 H 0.094 0.906 18 C -0.129 4.129 19 C -0.134 4.134 20 C -0.105 4.105 21 C -0.169 4.169 22 C 0.517 3.483 23 O -0.603 6.603 24 N -0.711 5.711 25 H 0.036 0.964 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.078 0.922 30 H -0.005 1.005 31 H 0.018 0.982 32 H 0.256 0.744 33 H 0.156 0.844 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 -11.591 -14.667 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 N -0.329 5.329 4 C 0.124 3.876 5 C -0.644 4.644 6 H 0.064 0.936 7 C -0.230 4.230 8 N -0.572 5.572 9 Si 0.937 3.063 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.203 1.203 13 C 0.291 3.709 14 O -0.472 6.472 15 C -0.206 4.206 16 C 0.048 3.952 17 H 0.112 0.888 18 C -0.167 4.167 19 C -0.170 4.170 20 C -0.143 4.143 21 C -0.208 4.208 22 C 0.305 3.695 23 O -0.485 6.485 24 N -0.361 5.361 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.129 0.871 29 H 0.097 0.903 30 H 0.013 0.987 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.173 0.827 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.141 0.859 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 1.648 -10.368 -13.837 17.368 hybrid contribution 0.497 -0.028 -0.983 1.102 sum 2.145 -10.396 -14.820 18.229 Atomic orbital electron populations 1.22183 0.95857 1.02947 1.01489 1.21791 0.94985 0.80981 1.04224 1.48093 1.63891 1.15025 1.05853 1.18878 0.95653 0.91580 0.81455 1.22535 0.98334 1.34379 1.09173 0.93597 1.27174 1.05283 0.96649 0.93866 1.70894 1.02553 1.43458 1.40340 0.82948 0.71518 0.75552 0.76263 1.20862 1.19432 1.20325 1.21068 0.77172 0.86338 0.86330 1.90640 1.48633 1.20005 1.87882 1.23056 1.05688 1.01613 0.90284 1.21059 0.90765 0.99901 0.83520 0.88788 1.21725 0.94084 0.98425 1.02488 1.21353 1.01838 0.93422 1.00424 1.21220 0.91973 1.01423 0.99662 1.22755 0.97158 0.97047 1.03810 1.21140 0.79939 0.85234 0.83162 1.90717 1.41890 1.84445 1.31454 1.46125 1.48809 1.08536 1.32642 0.94434 0.93243 0.88806 0.87145 0.90347 0.98658 0.96437 0.93431 0.82707 0.87514 0.90394 0.91098 0.89747 0.90852 0.92226 0.87802 0.87486 0.85929 0.76082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.47 10.24 71.98 0.74 -3.73 16 2 C 0.10 2.73 5.98 86.38 0.52 3.25 16 3 N -0.60 -22.93 2.46 -826.13 -2.03 -24.95 16 4 C 0.25 12.46 4.52 85.64 0.39 12.85 16 5 C -0.61 -33.83 8.92 25.60 0.23 -33.60 16 6 H 0.05 2.58 7.42 -2.92 -0.02 2.56 16 7 C -0.03 -1.80 5.46 84.66 0.46 -1.34 16 8 N -0.93 -57.02 13.65 21.45 0.29 -56.72 16 9 Si 1.12 50.77 29.90 68.60 2.05 52.82 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 C 0.50 18.39 7.67 87.66 0.67 19.06 16 14 O -0.59 -27.44 14.96 -3.04 -0.05 -27.49 16 15 C -0.17 -3.93 1.83 29.85 0.05 -3.88 16 16 C 0.15 3.50 3.12 44.86 0.14 3.64 16 17 H 0.09 2.66 6.90 -2.38 -0.02 2.65 16 18 C -0.13 -2.49 5.56 30.19 0.17 -2.32 16 19 C -0.13 -1.93 5.18 29.80 0.15 -1.78 16 20 C -0.11 -1.34 5.67 30.22 0.17 -1.17 16 21 C -0.17 -2.64 5.51 30.10 0.17 -2.48 16 22 C 0.52 12.17 6.67 88.11 0.59 12.76 16 23 O -0.60 -19.35 17.92 -3.04 -0.05 -19.40 16 24 N -0.71 -15.46 5.09 -442.19 -2.25 -17.71 16 25 H 0.04 1.30 7.26 -2.39 -0.02 1.29 16 26 H 0.05 1.30 7.22 -2.38 -0.02 1.28 16 27 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.11 1.88 6.44 -2.39 -0.02 1.86 16 29 H 0.08 2.07 7.89 -2.38 -0.02 2.06 16 30 H 0.00 -0.27 7.29 -2.39 -0.02 -0.28 16 31 H 0.02 0.90 7.75 -2.39 -0.02 0.88 16 32 H 0.26 15.71 7.22 -92.71 -0.67 15.04 16 33 H 0.16 2.64 1.99 -2.39 0.00 2.63 16 34 H 0.11 2.36 6.49 -2.39 -0.02 2.35 16 35 H 0.08 1.39 8.05 -2.39 -0.02 1.37 16 36 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.07 1.07 5.56 -2.39 -0.01 1.06 16 39 H 0.06 0.88 7.86 -2.39 -0.02 0.86 16 40 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.11 1.51 8.13 -2.39 -0.02 1.49 16 42 H 0.12 1.63 3.64 -2.39 -0.01 1.62 16 43 H 0.40 8.41 8.91 -92.70 -0.83 7.58 16 Total: -1.00 -77.47 330.23 2.71 -74.76 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.31 Total: 17.43 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 4.44 Total: 1.27 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -3.99 Total: -99.39 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -0.10 Total: -46.89 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.82 kcal Total: -77.47 2.71 -74.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337060877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.435 kcal (2) G-P(sol) polarization free energy of solvation -77.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds