Wall clock time and date at job start Tue Mar 31 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47117 * 2 1 4 4 C 1.46504 * 119.99972 * 270.00241 * 3 2 1 5 5 C 1.50694 * 109.47004 * 269.99527 * 4 3 2 6 6 H 1.08000 * 120.00106 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99842 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00181 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00099 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47330 * 60.00064 * 9 7 5 11 11 H 1.48502 * 109.47521 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47221 * 300.00079 * 9 7 5 13 13 C 1.34775 * 120.00331 * 90.00136 * 3 2 1 14 14 O 1.21278 * 120.00358 * 180.02562 * 13 3 2 15 15 C 1.50708 * 119.99738 * 0.02562 * 13 3 2 16 16 C 1.52997 * 109.47094 * 180.02562 * 15 13 3 17 17 H 1.08997 * 109.60599 * 28.87402 * 16 15 13 18 18 C 1.52990 * 109.60456 * 268.54841 * 16 15 13 19 19 C 1.51784 * 110.87679 * 326.70579 * 18 16 15 20 20 C 1.51799 * 113.80970 * 293.00789 * 19 18 16 21 21 C 1.53053 * 110.74899 * 66.81238 * 20 19 18 22 22 C 1.51421 * 108.49452 * 275.07730 * 21 20 19 23 23 O 1.21281 * 119.89602 * 251.20048 * 22 21 20 24 24 N 1.33374 * 120.21200 * 71.21852 * 22 21 20 25 25 H 1.09003 * 109.47001 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47055 * 299.99629 * 1 2 3 27 27 H 1.08997 * 109.47135 * 59.99929 * 1 2 3 28 28 H 1.08998 * 109.46910 * 239.99993 * 2 1 3 29 29 H 1.08997 * 109.47135 * 120.00071 * 2 1 3 30 30 H 1.08999 * 109.47279 * 30.00231 * 4 3 2 31 31 H 1.09003 * 109.47094 * 149.99884 * 4 3 2 32 32 H 0.97004 * 120.00432 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46950 * 299.99923 * 15 13 3 34 34 H 1.08999 * 109.46969 * 60.00135 * 15 13 3 35 35 H 1.08991 * 109.19740 * 87.06498 * 18 16 15 36 36 H 1.09000 * 109.19419 * 206.40037 * 18 16 15 37 37 H 1.08999 * 108.61456 * 54.12096 * 19 18 16 38 38 H 1.08997 * 108.61511 * 171.88950 * 19 18 16 39 39 H 1.08999 * 109.21838 * 187.14262 * 20 19 18 40 40 H 1.09000 * 109.21686 * 306.48388 * 20 19 18 41 41 H 1.08999 * 109.63507 * 34.78247 * 21 20 19 42 42 H 1.09000 * 109.63363 * 155.37880 * 21 20 19 43 43 H 0.97006 * 119.78207 * 180.32122 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3897 -2.8780 8 7 3.3489 3.1258 -3.6181 9 14 5.9130 2.0958 -3.4176 10 1 6.1402 0.6391 -3.5949 11 1 6.1605 2.7959 -4.7036 12 1 6.8409 2.6192 -2.3831 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 6 2.3231 2.2435 3.6352 17 1 2.1619 3.2771 3.3289 18 6 3.7836 2.0528 4.0491 19 6 4.2157 0.6102 3.8589 20 6 3.5213 -0.3655 4.7917 21 6 2.0285 -0.4576 4.4667 22 6 1.3099 0.6633 5.1877 23 8 0.5934 0.4122 6.1335 24 7 1.4621 1.9260 4.7859 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.5816 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 3.6749 3.5163 -4.4441 33 1 0.9446 1.0114 2.5303 34 1 2.6230 0.4187 2.5298 35 1 4.4159 2.6994 3.4408 36 1 3.8972 2.3247 5.0985 37 1 4.0062 0.3170 2.8302 38 1 5.2910 0.5444 4.0243 39 1 3.9740 -1.3509 4.6818 40 1 3.6444 -0.0276 5.8207 41 1 1.8808 -0.3555 3.3916 42 1 1.6390 -1.4184 4.8031 43 1 1.0024 2.6397 5.2553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337060879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:19 Heat of formation + Delta-G solvation = -61.799443 kcal Electronic energy + Delta-G solvation = -23730.536630 eV Core-core repulsion = 20390.189596 eV Total energy + Delta-G solvation = -3340.347035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01641 -38.99902 -37.08637 -35.40496 -34.01654 -32.87480 -31.31473 -30.25093 -29.84034 -27.12355 -25.47696 -23.95141 -23.08667 -22.67260 -20.27661 -19.60558 -18.33205 -17.61283 -16.80805 -16.48098 -16.10201 -15.62784 -15.38214 -14.48337 -14.40433 -14.27887 -14.03297 -13.78341 -13.51528 -13.44668 -12.92056 -12.83930 -12.37222 -12.13335 -11.99535 -11.91439 -11.45827 -11.39844 -11.17641 -10.97827 -10.96835 -10.80160 -10.74627 -10.58232 -10.20934 -10.16231 -9.78580 -9.69781 -9.18602 -8.92662 -8.47494 -7.74680 -6.08593 -4.13701 2.61496 3.20383 3.28099 3.31115 3.33385 3.36918 3.84359 4.36212 4.41068 4.59176 4.64019 4.72720 4.91765 5.01608 5.10618 5.22498 5.26246 5.27927 5.38965 5.44604 5.46807 5.56725 5.66642 5.72956 5.77848 5.83179 5.92447 5.98441 6.06651 6.13096 6.17260 6.23866 6.42679 6.76891 7.00068 7.24810 7.39041 7.47425 7.87071 8.18296 8.21369 8.34172 8.83605 9.00020 9.51528 10.99449 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.004835 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.776151 B = 5789.420982 C = 6214.045588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.508 3.492 14 O -0.541 6.541 15 C -0.185 4.185 16 C 0.149 3.851 17 H 0.116 0.884 18 C -0.131 4.131 19 C -0.136 4.136 20 C -0.110 4.110 21 C -0.173 4.173 22 C 0.521 3.479 23 O -0.562 6.562 24 N -0.718 5.718 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 -7.439 12.935 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.326 5.326 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.294 3.706 14 O -0.419 6.419 15 C -0.225 4.225 16 C 0.044 3.956 17 H 0.134 0.866 18 C -0.169 4.169 19 C -0.173 4.173 20 C -0.148 4.148 21 C -0.212 4.212 22 C 0.308 3.692 23 O -0.441 6.441 24 N -0.370 5.370 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.142 0.858 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -2.093 -7.012 13.109 15.013 hybrid contribution 0.785 0.097 -0.340 0.861 sum -1.308 -6.915 12.769 14.580 Atomic orbital electron populations 1.22234 0.96729 1.01561 1.02377 1.21427 0.93570 0.84233 1.02635 1.48240 1.63389 1.13219 1.07755 1.19280 0.96294 0.93637 0.78085 1.21370 0.96864 1.32044 1.06302 0.92515 1.24927 0.97802 0.94908 0.96383 1.69919 1.35732 1.33314 1.14359 0.86573 0.84803 0.78252 0.77872 1.20257 1.21189 1.20190 1.20112 0.78610 0.86888 0.85011 1.90659 1.46195 1.18051 1.87025 1.23020 1.04149 1.01398 0.93918 1.21189 0.89636 1.01193 0.83590 0.86586 1.21747 0.95726 0.97197 1.02245 1.21353 1.00740 0.94709 1.00514 1.21209 0.93027 1.00309 1.00243 1.22706 0.96677 0.97855 1.03963 1.20549 0.80469 0.84589 0.83578 1.90725 1.39994 1.83925 1.29487 1.46162 1.49310 1.08319 1.33185 0.92049 0.93126 0.91928 0.89782 0.91942 0.95035 0.93871 0.92636 0.88822 0.85842 0.89551 0.91281 0.90614 0.91295 0.90580 0.91737 0.86786 0.88738 0.76400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.54 5.93 -4.04 -0.02 1.51 16 3 N -0.59 -11.51 2.46 -175.06 -0.43 -11.94 16 4 C 0.25 6.11 5.16 -5.19 -0.03 6.08 16 5 C -0.53 -14.26 9.39 -34.44 -0.32 -14.59 16 6 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 9 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.51 9.37 7.66 -10.98 -0.08 9.29 16 14 O -0.54 -12.19 14.96 5.56 0.08 -12.11 16 15 C -0.19 -2.38 1.83 -27.88 -0.05 -2.43 16 16 C 0.15 1.79 3.12 -67.56 -0.21 1.58 16 17 H 0.12 1.57 6.90 -51.93 -0.36 1.21 16 18 C -0.13 -1.47 5.56 -27.35 -0.15 -1.62 16 19 C -0.14 -1.37 5.19 -27.96 -0.14 -1.52 16 20 C -0.11 -1.00 5.66 -27.31 -0.15 -1.16 16 21 C -0.17 -1.73 5.51 -27.50 -0.15 -1.88 16 22 C 0.52 6.66 6.67 -11.25 -0.08 6.59 16 23 O -0.56 -9.32 17.92 5.56 0.10 -9.22 16 24 N -0.72 -8.14 5.09 -53.45 -0.27 -8.41 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.61 7.22 -51.93 -0.38 0.23 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 29 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16 30 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.09 1.11 6.50 -51.93 -0.34 0.77 16 34 H 0.12 1.39 1.99 -51.93 -0.10 1.29 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.71 8.05 -51.93 -0.42 0.30 16 37 H 0.08 0.83 5.56 -51.93 -0.29 0.54 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.63 7.86 -51.93 -0.41 0.22 16 41 H 0.11 1.06 3.64 -51.93 -0.19 0.87 16 42 H 0.09 0.89 8.13 -51.93 -0.42 0.46 16 43 H 0.40 4.14 8.91 -40.82 -0.36 3.77 16 LS Contribution 333.55 15.07 5.03 5.03 Total: -1.00 -33.07 333.55 -7.37 -40.44 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.48 Total: 3.50 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.12 Total: 1.72 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.03 Total: -45.51 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: 0.18 Total: -21.32 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.07 -7.37 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337060879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.356 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds