Wall clock time and date at job start Tue Mar 31 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47117 * 2 1 4 4 C 1.46504 * 119.99972 * 270.00241 * 3 2 1 5 5 C 1.50694 * 109.47004 * 269.99527 * 4 3 2 6 6 H 1.08000 * 120.00106 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99842 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00181 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00099 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47330 * 60.00064 * 9 7 5 11 11 H 1.48502 * 109.47521 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47221 * 300.00079 * 9 7 5 13 13 C 1.34775 * 120.00331 * 90.00136 * 3 2 1 14 14 O 1.21278 * 120.00358 * 180.02562 * 13 3 2 15 15 C 1.50708 * 119.99738 * 0.02562 * 13 3 2 16 16 C 1.52997 * 109.47094 * 180.02562 * 15 13 3 17 17 H 1.08997 * 109.60599 * 28.87402 * 16 15 13 18 18 C 1.52990 * 109.60456 * 268.54841 * 16 15 13 19 19 C 1.51784 * 110.87679 * 326.70579 * 18 16 15 20 20 C 1.51799 * 113.80970 * 293.00789 * 19 18 16 21 21 C 1.53053 * 110.74899 * 66.81238 * 20 19 18 22 22 C 1.51421 * 108.49452 * 275.07730 * 21 20 19 23 23 O 1.21281 * 119.89602 * 251.20048 * 22 21 20 24 24 N 1.33374 * 120.21200 * 71.21852 * 22 21 20 25 25 H 1.09003 * 109.47001 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47055 * 299.99629 * 1 2 3 27 27 H 1.08997 * 109.47135 * 59.99929 * 1 2 3 28 28 H 1.08998 * 109.46910 * 239.99993 * 2 1 3 29 29 H 1.08997 * 109.47135 * 120.00071 * 2 1 3 30 30 H 1.08999 * 109.47279 * 30.00231 * 4 3 2 31 31 H 1.09003 * 109.47094 * 149.99884 * 4 3 2 32 32 H 0.97004 * 120.00432 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46950 * 299.99923 * 15 13 3 34 34 H 1.08999 * 109.46969 * 60.00135 * 15 13 3 35 35 H 1.08991 * 109.19740 * 87.06498 * 18 16 15 36 36 H 1.09000 * 109.19419 * 206.40037 * 18 16 15 37 37 H 1.08999 * 108.61456 * 54.12096 * 19 18 16 38 38 H 1.08997 * 108.61511 * 171.88950 * 19 18 16 39 39 H 1.08999 * 109.21838 * 187.14262 * 20 19 18 40 40 H 1.09000 * 109.21686 * 306.48388 * 20 19 18 41 41 H 1.08999 * 109.63507 * 34.78247 * 21 20 19 42 42 H 1.09000 * 109.63363 * 155.37880 * 21 20 19 43 43 H 0.97006 * 119.78207 * 180.32122 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3897 -2.8780 8 7 3.3489 3.1258 -3.6181 9 14 5.9130 2.0958 -3.4176 10 1 6.1402 0.6391 -3.5949 11 1 6.1605 2.7959 -4.7036 12 1 6.8409 2.6192 -2.3831 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 6 2.3231 2.2435 3.6352 17 1 2.1619 3.2771 3.3289 18 6 3.7836 2.0528 4.0491 19 6 4.2157 0.6102 3.8589 20 6 3.5213 -0.3655 4.7917 21 6 2.0285 -0.4576 4.4667 22 6 1.3099 0.6633 5.1877 23 8 0.5934 0.4122 6.1335 24 7 1.4621 1.9260 4.7859 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.5816 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 3.6749 3.5163 -4.4441 33 1 0.9446 1.0114 2.5303 34 1 2.6230 0.4187 2.5298 35 1 4.4159 2.6994 3.4408 36 1 3.8972 2.3247 5.0985 37 1 4.0062 0.3170 2.8302 38 1 5.2910 0.5444 4.0243 39 1 3.9740 -1.3509 4.6818 40 1 3.6444 -0.0276 5.8207 41 1 1.8808 -0.3555 3.3916 42 1 1.6390 -1.4184 4.8031 43 1 1.0024 2.6397 5.2553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337060879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:18 Heat of formation + Delta-G solvation = -84.550187 kcal Electronic energy + Delta-G solvation = -23731.523176 eV Core-core repulsion = 20390.189596 eV Total energy + Delta-G solvation = -3341.333581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.07097 -40.38827 -38.19601 -36.92681 -34.90524 -34.87942 -32.33196 -31.66989 -30.94869 -28.83607 -26.56886 -25.07298 -24.56839 -24.02943 -21.28160 -20.65988 -19.54147 -18.84803 -18.49628 -17.82089 -17.42842 -16.96750 -16.62459 -16.15659 -15.75200 -15.38261 -14.98837 -14.83542 -14.67652 -14.57564 -14.26697 -14.07179 -13.71786 -13.51125 -13.22754 -13.12638 -12.98638 -12.72080 -12.60164 -12.38886 -12.29096 -12.11021 -11.90486 -11.75772 -11.70118 -11.59284 -11.17941 -10.80746 -10.60556 -10.44123 -10.15657 -9.40599 -8.18674 -6.33128 1.40065 1.43639 1.50701 1.62508 1.85810 2.15159 2.38617 2.54704 3.11483 3.45596 3.58365 3.71657 3.82373 3.88960 4.08803 4.13251 4.26648 4.37451 4.40954 4.49114 4.51026 4.61754 4.69640 4.84879 4.91157 4.96811 5.00936 5.03640 5.09110 5.11979 5.23666 5.25915 5.27270 5.40743 5.43544 5.61710 5.82376 5.88683 6.10131 6.28611 6.74036 6.84018 7.23746 7.32267 7.51092 8.88156 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.004835 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.776151 B = 5789.420982 C = 6214.045588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.261 3.739 5 C -0.538 4.538 6 H 0.058 0.942 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.965 3.035 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.276 1.276 13 C 0.501 3.499 14 O -0.591 6.591 15 C -0.169 4.169 16 C 0.154 3.846 17 H 0.098 0.902 18 C -0.130 4.130 19 C -0.135 4.135 20 C -0.104 4.104 21 C -0.169 4.169 22 C 0.518 3.482 23 O -0.602 6.602 24 N -0.709 5.709 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.019 0.981 31 H -0.004 1.004 32 H 0.266 0.734 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.124 0.876 42 H 0.107 0.893 43 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 -10.032 14.039 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.025 4.025 3 N -0.332 5.332 4 C 0.140 3.860 5 C -0.577 4.577 6 H 0.077 0.923 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.201 1.201 13 C 0.290 3.710 14 O -0.472 6.472 15 C -0.208 4.208 16 C 0.049 3.951 17 H 0.116 0.884 18 C -0.168 4.168 19 C -0.172 4.172 20 C -0.142 4.142 21 C -0.208 4.208 22 C 0.307 3.693 23 O -0.484 6.484 24 N -0.359 5.359 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.037 0.963 31 H 0.015 0.985 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.167 0.833 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.078 0.922 41 H 0.141 0.859 42 H 0.125 0.875 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.224 -9.638 14.224 17.225 hybrid contribution 0.466 0.955 -0.662 1.252 sum -0.758 -8.683 13.561 16.121 Atomic orbital electron populations 1.22186 0.95026 1.03535 1.01531 1.21770 0.94978 0.81493 1.04213 1.48239 1.63669 1.15050 1.06219 1.18699 0.95302 0.91528 0.80485 1.21689 0.97795 1.31805 1.06392 0.92345 1.25842 1.02185 0.94576 0.96543 1.70052 1.37818 1.34369 1.14829 0.85504 0.79282 0.78995 0.77262 1.18417 1.20869 1.20131 1.21036 0.77194 0.86455 0.86327 1.90638 1.48255 1.20461 1.87883 1.23047 1.05818 1.01485 0.90421 1.21036 0.90433 1.00076 0.83544 0.88392 1.21718 0.94532 0.98168 1.02386 1.21354 1.01668 0.93742 1.00420 1.21203 0.92237 1.01216 0.99557 1.22748 0.96910 0.97187 1.03937 1.21078 0.79899 0.85223 0.83120 1.90715 1.41895 1.84438 1.31399 1.46101 1.48767 1.08473 1.32589 0.88593 0.92419 0.94376 0.90729 0.87812 0.96326 0.98545 0.92566 0.86921 0.83299 0.91431 0.90345 0.91098 0.90216 0.88072 0.92166 0.85853 0.87470 0.75963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 10.24 71.98 0.74 -3.02 16 2 C 0.10 2.64 5.93 86.38 0.51 3.15 16 3 N -0.60 -23.26 2.46 -826.16 -2.03 -25.29 16 4 C 0.26 13.50 5.16 85.63 0.44 13.94 16 5 C -0.54 -29.61 9.39 25.60 0.24 -29.37 16 6 H 0.06 3.12 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 9 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 10 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 13 C 0.50 18.46 7.66 87.66 0.67 19.13 16 14 O -0.59 -27.60 14.96 -3.02 -0.05 -27.65 16 15 C -0.17 -3.98 1.83 29.85 0.05 -3.92 16 16 C 0.15 3.54 3.12 44.86 0.14 3.68 16 17 H 0.10 2.69 6.90 -2.39 -0.02 2.68 16 18 C -0.13 -2.73 5.56 30.19 0.17 -2.56 16 19 C -0.13 -2.31 5.19 29.80 0.15 -2.16 16 20 C -0.10 -1.50 5.66 30.22 0.17 -1.33 16 21 C -0.17 -2.74 5.51 30.10 0.17 -2.57 16 22 C 0.52 12.03 6.67 88.10 0.59 12.62 16 23 O -0.60 -18.98 17.92 -3.03 -0.05 -19.04 16 24 N -0.71 -14.94 5.09 -442.20 -2.25 -17.19 16 25 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 1.23 7.22 -2.38 -0.02 1.22 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 29 H 0.10 1.94 6.44 -2.39 -0.02 1.93 16 30 H 0.02 1.00 8.07 -2.39 -0.02 0.98 16 31 H 0.00 -0.22 7.42 -2.39 -0.02 -0.23 16 32 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 33 H 0.11 2.29 6.50 -2.39 -0.02 2.28 16 34 H 0.15 2.81 1.99 -2.39 0.00 2.80 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.50 8.05 -2.39 -0.02 1.48 16 37 H 0.07 1.30 5.56 -2.39 -0.01 1.28 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 0.96 7.86 -2.39 -0.02 0.94 16 41 H 0.12 1.72 3.64 -2.39 -0.01 1.71 16 42 H 0.11 1.55 8.13 -2.39 -0.02 1.53 16 43 H 0.40 7.97 8.91 -92.70 -0.83 7.14 16 Total: -1.00 -74.95 333.55 2.64 -72.31 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.20 Total: 18.00 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 4.51 Total: 8.46 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -4.00 Total: -97.51 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -0.10 Total: -46.68 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -74.95 2.64 -72.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337060879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.241 kcal (2) G-P(sol) polarization free energy of solvation -74.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds