Wall clock time and date at job start Tue Mar 31 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47378 * 2 1 4 4 C 1.37094 * 119.99970 * 263.55909 * 3 2 1 5 5 H 1.08004 * 120.00062 * 188.38828 * 4 3 2 6 6 C 1.38956 * 120.00077 * 8.38845 * 4 3 2 7 7 N 1.31410 * 120.00131 * 25.16767 * 6 4 3 8 8 Si 1.86800 * 119.99795 * 205.16307 * 6 4 3 9 9 H 1.48501 * 109.47235 * 84.98996 * 8 6 4 10 10 H 1.48505 * 109.46847 * 204.98837 * 8 6 4 11 11 H 1.48496 * 109.47377 * 324.98697 * 8 6 4 12 12 C 1.34771 * 119.99888 * 83.55489 * 3 2 1 13 13 O 1.21295 * 120.00330 * 180.02562 * 12 3 2 14 14 C 1.50701 * 120.00228 * 0.02562 * 12 3 2 15 15 N 1.46496 * 109.47416 * 179.97438 * 14 12 3 16 16 C 1.34777 * 120.00140 * 180.02562 * 15 14 12 17 17 O 1.21274 * 120.00053 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00167 * 180.02562 * 16 15 14 19 19 C 1.53005 * 109.47081 * 59.99647 * 18 16 15 20 20 C 1.53000 * 109.46813 * 180.02562 * 19 18 16 21 21 C 1.52999 * 109.47137 * 300.00071 * 20 19 18 22 22 C 1.52996 * 109.47185 * 60.00243 * 21 20 19 23 23 C 1.52992 * 109.47400 * 179.97438 * 18 16 15 24 24 H 1.08993 * 109.47466 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47194 * 300.00009 * 1 2 3 26 26 H 1.09004 * 109.47083 * 59.99851 * 1 2 3 27 27 H 1.09004 * 109.47194 * 239.99991 * 2 1 3 28 28 H 1.09004 * 109.47083 * 120.00149 * 2 1 3 29 29 H 0.96998 * 120.00320 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47034 * 59.99598 * 14 12 3 31 31 H 1.08998 * 109.46640 * 299.99790 * 14 12 3 32 32 H 0.96998 * 119.99749 * 0.02562 * 15 14 12 33 33 H 1.09006 * 109.47083 * 300.00232 * 18 16 15 34 34 H 1.09001 * 109.47356 * 300.00095 * 19 18 16 35 35 H 1.08998 * 109.47179 * 59.99956 * 19 18 16 36 36 H 1.09001 * 109.46946 * 180.02562 * 20 19 18 37 37 H 1.08997 * 109.47639 * 60.00406 * 20 19 18 38 38 H 1.09007 * 109.46900 * 300.00188 * 21 20 19 39 39 H 1.09003 * 109.47151 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.47214 * 180.02562 * 22 21 20 41 41 H 1.08995 * 109.47435 * 59.99872 * 22 21 20 42 42 H 1.08997 * 109.47270 * 300.00413 * 23 18 16 43 43 H 1.09001 * 109.46842 * 59.99889 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3725 1.9831 -1.1798 5 1 2.8580 2.9478 -1.1695 6 6 2.1067 1.3519 -2.3889 7 7 1.1282 0.4789 -2.4732 8 14 3.1403 1.7447 -3.8945 9 1 4.3645 0.9042 -3.8875 10 1 2.3535 1.4633 -5.1221 11 1 3.5245 3.1790 -3.8707 12 6 2.1195 2.0602 1.1598 13 8 2.5234 3.2039 1.1598 14 6 1.7307 1.3984 2.4567 15 7 1.9307 2.3374 3.5633 16 6 1.6475 1.9611 4.8260 17 8 1.2266 0.8452 5.0463 18 6 1.8526 2.9272 5.9643 19 6 0.9831 4.1667 5.7441 20 6 1.1919 5.1479 6.8994 21 6 0.7983 4.4761 8.2165 22 6 1.6678 3.2366 8.4366 23 6 1.4581 2.2554 7.2810 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.9429 0.0380 -3.3171 30 1 2.3498 0.5152 2.6138 31 1 0.6820 1.1043 2.4144 32 1 2.2670 3.2300 3.3871 33 1 2.9013 3.2219 6.0062 34 1 1.2638 4.6456 4.8060 35 1 -0.0655 3.8722 5.7021 36 1 0.5721 6.0307 6.7429 37 1 2.2405 5.4424 6.9410 38 1 -0.2504 4.1815 8.1749 39 1 0.9466 5.1752 9.0395 40 1 1.3871 2.7577 9.3747 41 1 2.7164 3.5310 8.4781 42 1 0.4094 1.9610 7.2387 43 1 2.0772 1.3721 7.4380 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342261082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:10 Heat of formation + Delta-G solvation = -88.134701 kcal Electronic energy + Delta-G solvation = -22760.084746 eV Core-core repulsion = 19418.595728 eV Total energy + Delta-G solvation = -3341.489017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.06495 -38.68555 -37.44362 -35.33936 -33.90291 -31.96740 -31.25408 -30.81004 -29.49855 -27.54746 -24.69636 -23.29721 -22.61370 -22.19329 -20.33393 -19.67914 -19.19114 -17.26392 -16.85092 -16.00463 -15.47321 -15.34366 -14.95639 -14.49901 -14.33948 -14.26948 -14.13795 -13.64001 -13.50600 -12.83467 -12.68647 -12.47899 -12.36465 -12.25428 -12.03143 -11.75146 -11.38057 -11.27700 -11.24485 -11.10307 -10.82753 -10.76028 -10.52800 -10.39852 -10.23064 -10.21464 -9.93413 -9.47368 -8.98913 -8.70069 -8.55435 -7.87064 -6.44846 -3.86943 2.88980 3.10422 3.21961 3.25322 3.45445 3.73935 4.07777 4.55994 4.60633 4.64141 4.81200 4.99312 5.07211 5.09039 5.20385 5.29337 5.36014 5.39717 5.51126 5.57807 5.70319 5.89311 5.90350 5.93208 5.96264 5.97785 6.05515 6.12541 6.17847 6.21190 6.33167 6.52996 6.57158 6.68453 6.78260 7.20255 7.40078 7.67187 7.87859 7.97903 8.39408 8.52630 9.06377 9.32943 9.84396 10.55332 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034826 B = 0.003473 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.793805 B = 8059.776530 C = 8522.348322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.115 3.885 3 N -0.429 5.429 4 C -0.311 4.311 5 H 0.106 0.894 6 C 0.033 3.967 7 N -0.861 5.861 8 Si 0.922 3.078 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.428 3.572 13 O -0.596 6.596 14 C 0.109 3.891 15 N -0.708 5.708 16 C 0.513 3.487 17 O -0.551 6.551 18 C -0.104 4.104 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.098 4.098 24 H 0.040 0.960 25 H 0.025 0.975 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.035 0.965 29 H 0.269 0.731 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.410 0.590 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 3.165 15.123 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.008 4.008 3 N -0.147 5.147 4 C -0.439 4.439 5 H 0.124 0.876 6 C -0.171 4.171 7 N -0.500 5.500 8 Si 0.748 3.252 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.194 1.194 12 C 0.216 3.784 13 O -0.483 6.483 14 C -0.018 4.018 15 N -0.362 5.362 16 C 0.299 3.701 17 O -0.429 6.429 18 C -0.125 4.125 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.136 4.136 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.111 0.889 27 H 0.122 0.878 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.247 0.753 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.571 2.781 15.059 15.325 hybrid contribution 0.493 0.312 -1.004 1.161 sum -0.078 3.093 14.056 14.392 Atomic orbital electron populations 1.22112 0.96386 1.00158 1.02054 1.21543 0.94775 0.83402 1.01121 1.43773 1.54251 1.11273 1.05372 1.19747 1.36425 1.05748 0.81953 0.87603 1.25233 0.95836 0.96983 0.99053 1.70114 1.24593 1.28332 1.26914 0.86018 0.79895 0.79257 0.80026 1.20267 1.21052 1.19422 1.19760 0.86459 0.87091 0.85092 1.90478 1.53046 1.18347 1.86424 1.21076 1.02281 0.92391 0.86097 1.45815 1.66378 1.18321 1.05681 1.20625 0.77402 0.88326 0.83737 1.90664 1.45991 1.21766 1.84520 1.21323 1.02005 0.95342 0.93864 1.21554 1.00072 0.94387 0.99094 1.21525 1.01767 0.97846 0.94338 1.21569 1.00008 0.97062 0.97272 1.21570 1.00058 0.95941 0.98125 1.21339 1.02716 0.97641 0.91907 0.94052 0.95641 0.88936 0.87783 0.94647 0.92064 0.90306 0.89725 0.75254 0.88643 0.91013 0.91346 0.91680 0.91732 0.91931 0.92140 0.91841 0.91969 0.91206 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.64 37.16 0.36 -2.74 16 2 C 0.12 2.53 5.07 -4.04 -0.02 2.51 16 3 N -0.43 -10.67 2.64 -114.81 -0.30 -10.97 16 4 C -0.31 -8.37 9.43 -14.93 -0.14 -8.51 16 5 H 0.11 3.01 7.31 -52.48 -0.38 2.62 16 6 C 0.03 0.82 4.90 -17.47 -0.09 0.74 16 7 N -0.86 -21.40 8.65 55.50 0.48 -20.92 16 8 Si 0.92 19.90 29.62 -169.99 -5.04 14.86 16 9 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 C 0.43 10.17 7.65 -10.99 -0.08 10.09 16 13 O -0.60 -15.59 15.26 5.54 0.08 -15.50 16 14 C 0.11 2.14 4.76 -5.20 -0.02 2.12 16 15 N -0.71 -12.35 5.42 -61.48 -0.33 -12.69 16 16 C 0.51 8.35 7.15 -10.98 -0.08 8.27 16 17 O -0.55 -10.66 15.98 5.56 0.09 -10.57 16 18 C -0.10 -1.26 2.53 -91.77 -0.23 -1.49 16 19 C -0.11 -1.23 5.10 -26.73 -0.14 -1.36 16 20 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 21 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 22 C -0.12 -1.03 5.93 -26.71 -0.16 -1.19 16 23 C -0.10 -1.10 4.49 -26.71 -0.12 -1.22 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.02 0.50 6.45 -51.93 -0.34 0.16 16 26 H 0.09 2.18 6.38 -51.93 -0.33 1.85 16 27 H 0.10 2.45 5.83 -51.93 -0.30 2.15 16 28 H 0.04 0.69 6.71 -51.93 -0.35 0.34 16 29 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 30 H 0.08 1.51 7.42 -51.93 -0.39 1.12 16 31 H 0.08 1.67 6.41 -51.93 -0.33 1.34 16 32 H 0.41 6.98 6.86 -40.82 -0.28 6.70 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.80 7.57 -51.93 -0.39 0.41 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 43 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -29.35 336.10 -7.86 -37.22 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.87 Total: 8.64 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.04 Total: 4.87 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.16 Total: -44.58 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: 0.17 Total: -26.07 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.04 Total: 14.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.35 -7.86 -37.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342261082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.916 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds