Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46961 * 2 1 4 4 C 1.46509 * 119.99789 * 96.84991 * 3 2 1 5 5 C 1.53000 * 109.46822 * 269.99397 * 4 3 2 6 6 C 1.52999 * 117.50253 * 243.62280 * 5 4 3 7 7 C 1.52998 * 117.49599 * 174.99663 * 5 4 3 8 8 C 1.34777 * 120.00118 * 276.84273 * 3 2 1 9 9 O 1.21355 * 119.99840 * 176.17071 * 8 3 2 10 10 C 1.49442 * 119.99883 * 356.18160 * 8 3 2 11 11 O 1.21353 * 120.00431 * 5.70185 * 10 8 3 12 12 N 1.34780 * 119.99992 * 185.70353 * 10 8 3 13 13 C 1.46501 * 120.00009 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.47014 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47045 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47175 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99802 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00209 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99780 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00040 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47201 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47519 * 119.99879 * 20 18 16 23 23 H 1.48500 * 109.47137 * 240.00032 * 20 18 16 24 24 H 1.08999 * 109.47385 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47276 * 300.00003 * 1 2 3 26 26 H 1.08999 * 109.47305 * 59.99686 * 1 2 3 27 27 H 1.08995 * 109.47270 * 240.00031 * 2 1 3 28 28 H 1.09002 * 109.47062 * 119.99845 * 2 1 3 29 29 H 1.08997 * 109.46786 * 29.99786 * 4 3 2 30 30 H 1.09001 * 109.46839 * 149.99798 * 4 3 2 31 31 H 1.09009 * 115.54723 * 29.33318 * 5 4 3 32 32 H 1.09004 * 117.49516 * 0.02562 * 6 5 4 33 33 H 1.08999 * 117.49840 * 145.02213 * 6 5 4 34 34 H 1.09000 * 117.50057 * 214.97634 * 7 5 4 35 35 H 1.09003 * 117.50042 * 0.02562 * 7 5 4 36 36 H 0.96999 * 120.00081 * 359.97438 * 12 10 8 37 37 H 1.08998 * 109.47285 * 299.99731 * 13 12 10 38 38 H 1.08997 * 109.47258 * 60.00174 * 13 12 10 39 39 H 1.08998 * 109.46827 * 299.99953 * 14 13 12 40 40 H 1.08997 * 109.47013 * 59.99966 * 14 13 12 41 41 H 1.09005 * 109.46816 * 299.99836 * 15 14 13 42 42 H 1.08997 * 109.47426 * 59.99994 * 15 14 13 43 43 H 0.97002 * 119.99542 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4051 2.0214 1.2598 5 6 1.1894 2.7217 1.8702 6 6 1.2490 4.2438 2.0134 7 6 1.3590 3.3539 3.2531 8 6 2.1118 2.0630 -1.1589 9 8 2.4498 3.2285 -1.1516 10 6 1.7990 1.3837 -2.4527 11 8 1.3620 0.2516 -2.4536 12 7 2.0024 2.0283 -3.6187 13 6 1.6963 1.3622 -4.8871 14 6 2.0157 2.3055 -6.0487 15 6 1.6954 1.6101 -7.3733 16 6 2.0106 2.5389 -8.5173 17 1 2.3999 3.5267 -8.3194 18 6 1.8019 2.1278 -9.8167 19 7 1.3282 0.9248 -10.0577 20 14 2.1918 3.2794 -11.2348 21 1 2.7081 4.5654 -10.7006 22 1 3.2189 2.6581 -12.1091 23 1 0.9580 3.5307 -12.0221 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.7751 1.2657 1.9526 30 1 3.1889 2.7545 1.0691 31 1 0.2230 2.2753 1.6359 32 1 2.1541 4.7464 1.6723 33 1 0.3216 4.7992 1.8732 34 1 0.5040 3.3239 3.9285 35 1 2.3367 3.2712 3.7279 36 1 2.3514 2.9334 -3.6181 37 1 2.2988 0.4583 -4.9775 38 1 0.6391 1.0983 -4.9131 39 1 1.4136 3.2096 -5.9585 40 1 3.0730 2.5690 -6.0225 41 1 2.2973 0.7057 -7.4636 42 1 0.6380 1.3469 -7.3992 43 1 1.1818 0.6354 -10.9719 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343137450.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = -51.891977 kcal Electronic energy + Delta-G solvation = -21955.135674 eV Core-core repulsion = 18615.218259 eV Total energy + Delta-G solvation = -3339.917415 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89159 -38.76814 -37.55365 -36.31390 -35.17587 -33.31234 -31.24520 -30.90711 -28.21860 -26.91763 -24.52057 -23.43754 -22.63912 -22.11531 -20.96778 -20.73126 -19.60090 -17.66012 -17.26851 -16.39527 -16.23293 -15.83685 -15.28891 -14.99573 -14.87345 -14.45636 -14.35358 -14.16786 -13.63225 -13.48781 -13.20382 -12.64197 -12.32965 -12.31323 -11.88931 -11.85302 -11.79607 -11.74406 -11.40356 -11.04845 -10.92290 -10.76590 -10.71868 -10.57640 -10.26660 -9.90802 -9.64647 -9.27606 -9.12402 -9.06194 -8.84997 -8.38973 -6.03559 -4.06384 1.45432 2.29620 3.21898 3.29708 3.37180 3.38718 3.41677 3.59752 4.38168 4.41307 4.45073 4.60448 4.65611 4.85890 4.98104 5.13530 5.18648 5.31896 5.32611 5.37478 5.39809 5.56016 5.59424 5.64185 5.68918 5.79524 5.84197 5.96274 6.07004 6.07734 6.25735 6.36539 6.53769 6.71771 6.90365 6.94927 7.34716 7.61210 7.72672 7.74501 7.95050 8.08400 8.36409 9.00383 9.58090 11.07780 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033283 B = 0.002703 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.075671 B =10357.467900 C =10934.885800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.091 3.909 3 N -0.584 5.584 4 C 0.144 3.856 5 C -0.173 4.173 6 C -0.170 4.170 7 C -0.177 4.177 8 C 0.507 3.493 9 O -0.519 6.519 10 C 0.499 3.501 11 O -0.518 6.518 12 N -0.692 5.692 13 C 0.115 3.885 14 C -0.123 4.123 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.410 0.590 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 0.452 26.150 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.030 4.030 3 N -0.318 5.318 4 C 0.022 3.978 5 C -0.193 4.193 6 C -0.207 4.207 7 C -0.214 4.214 8 C 0.290 3.710 9 O -0.394 6.394 10 C 0.279 3.721 11 O -0.395 6.395 12 N -0.343 5.343 13 C -0.007 4.007 14 C -0.161 4.161 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.246 0.754 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.434 0.139 25.977 25.981 hybrid contribution 0.173 0.959 -0.800 1.261 sum 0.607 1.098 25.177 25.208 Atomic orbital electron populations 1.22114 0.95486 1.02419 1.01770 1.22189 0.95300 0.80861 1.04676 1.47846 1.63368 1.14850 1.05716 1.21167 0.95461 0.97380 0.83794 1.22792 1.00402 0.96214 0.99856 1.23007 1.03624 0.92735 1.01295 1.22952 1.03100 1.04746 0.90652 1.20346 0.78715 0.86570 0.85368 1.90745 1.45796 1.15723 1.87134 1.20019 0.80208 0.86539 0.85292 1.90659 1.44307 1.17697 1.86869 1.46097 1.63352 1.19204 1.05661 1.21829 1.01342 0.96830 0.80745 1.21925 1.00963 0.98126 0.95061 1.19033 0.97296 0.95882 0.89122 1.21240 1.43227 1.00561 0.90967 0.92529 1.25029 0.95216 0.95197 0.99051 1.69973 1.45258 1.17932 1.20154 0.86521 0.78008 0.81017 0.82362 1.19723 1.20992 1.20997 0.91469 0.93258 0.92004 0.86624 0.90989 0.89682 0.89536 0.87460 0.88369 0.88991 0.88779 0.88692 0.75405 0.91119 0.91133 0.92460 0.92463 0.96209 0.96208 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.72 37.16 0.36 -1.18 16 2 C 0.09 0.88 5.75 -4.04 -0.02 0.85 16 3 N -0.58 -6.31 2.49 -174.19 -0.43 -6.74 16 4 C 0.14 1.26 5.70 -4.04 -0.02 1.24 16 5 C -0.17 -1.47 6.01 -90.62 -0.54 -2.02 16 6 C -0.17 -1.46 10.18 -26.73 -0.27 -1.73 16 7 C -0.18 -1.20 10.25 -26.73 -0.27 -1.47 16 8 C 0.51 6.87 7.67 -11.59 -0.09 6.78 16 9 O -0.52 -7.89 16.11 5.49 0.09 -7.80 16 10 C 0.50 7.36 7.66 -11.59 -0.09 7.27 16 11 O -0.52 -8.16 11.83 5.49 0.07 -8.10 16 12 N -0.69 -10.34 5.55 -60.73 -0.34 -10.67 16 13 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16 14 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 15 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 16 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 20 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.42 6.64 -51.93 -0.34 0.08 16 26 H 0.06 0.75 7.02 -51.93 -0.36 0.38 16 27 H 0.12 1.33 5.40 -51.93 -0.28 1.05 16 28 H 0.07 0.51 7.82 -51.93 -0.41 0.10 16 29 H 0.08 0.55 7.85 -51.93 -0.41 0.14 16 30 H 0.09 0.83 7.21 -51.93 -0.37 0.46 16 31 H 0.11 0.98 6.63 -51.92 -0.34 0.63 16 32 H 0.10 0.90 8.03 -51.93 -0.42 0.48 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.41 5.70 7.96 -40.82 -0.32 5.37 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -30.91 355.58 -8.24 -39.15 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.03 Total: 1.94 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.67 Total: -3.70 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -0.03 Total: -43.31 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.15 Total: -15.90 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.91 -8.24 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343137450.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.737 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds