Wall clock time and date at job start Tue Mar 31 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47232 * 2 1 4 4 C 1.52995 * 109.47312 * 120.00347 * 2 1 3 5 5 C 1.53003 * 109.47289 * 184.99950 * 4 2 1 6 6 C 1.53001 * 117.51964 * 116.28130 * 5 4 2 7 7 C 1.52999 * 60.00190 * 107.47982 * 6 5 4 8 8 N 1.46500 * 109.47207 * 239.99976 * 2 1 3 9 9 C 1.34781 * 119.99928 * 84.99727 * 8 2 1 10 10 O 1.21346 * 119.99883 * 0.02562 * 9 8 2 11 11 C 1.49454 * 119.99834 * 180.02562 * 9 8 2 12 12 O 1.21346 * 120.00283 * 0.02562 * 11 9 8 13 13 N 1.34781 * 119.99834 * 179.97438 * 11 9 8 14 14 C 1.46500 * 119.99928 * 179.97438 * 13 11 9 15 15 C 1.52994 * 109.46903 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47117 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47026 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00561 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99646 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99968 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99894 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46984 * 90.00424 * 21 19 17 23 23 H 1.48501 * 109.47083 * 210.00210 * 21 19 17 24 24 H 1.48496 * 109.47253 * 330.00713 * 21 19 17 25 25 H 1.08994 * 109.47158 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47012 * 300.00172 * 1 2 3 27 27 H 1.09004 * 109.46958 * 59.99520 * 1 2 3 28 28 H 1.08999 * 109.47504 * 64.99385 * 4 2 1 29 29 H 1.09005 * 109.46851 * 304.99539 * 4 2 1 30 30 H 1.09002 * 115.54973 * 330.57913 * 5 4 2 31 31 H 1.09001 * 117.49733 * 214.97413 * 6 5 4 32 32 H 1.08995 * 117.49577 * 359.97438 * 6 5 4 33 33 H 1.09004 * 117.50150 * 252.51496 * 7 6 5 34 34 H 1.09004 * 117.51638 * 107.47550 * 7 6 5 35 35 H 0.96999 * 120.00388 * 265.00769 * 8 2 1 36 36 H 0.97006 * 119.99777 * 0.02562 * 13 11 9 37 37 H 1.08993 * 109.47474 * 300.00376 * 14 13 11 38 38 H 1.09008 * 109.46884 * 60.00662 * 14 13 11 39 39 H 1.09002 * 109.47503 * 300.00462 * 15 14 13 40 40 H 1.08997 * 109.47168 * 60.00322 * 15 14 13 41 41 H 1.08993 * 109.47201 * 300.00332 * 16 15 14 42 42 H 1.08998 * 109.46852 * 60.00546 * 16 15 14 43 43 H 0.97007 * 119.99670 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3136 6 6 4.1702 0.1530 2.4914 7 6 4.2801 -1.3719 2.4334 8 7 2.0184 -0.6906 -1.1962 9 6 2.1470 -0.0182 -2.3572 10 8 1.8588 1.1592 -2.4115 11 6 2.6447 -0.7229 -3.5776 12 8 2.9325 -1.9005 -3.5233 13 7 2.7729 -0.0507 -4.7387 14 6 3.2612 -0.7413 -5.9349 15 6 3.3126 0.2418 -7.1060 16 6 3.8220 -0.4796 -8.3555 17 6 3.8732 0.4890 -9.5089 18 1 3.5730 1.5163 -9.3652 19 6 4.3045 0.0636 -10.7475 20 7 4.6707 -1.1873 -10.9225 21 14 4.3673 1.2640 -12.1775 22 1 5.6990 1.9202 -12.2148 23 1 4.1409 0.5312 -13.4491 24 1 3.3123 2.2947 -12.0053 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7516 -1.7715 1.2056 29 1 1.6054 -0.2617 2.1369 30 1 4.0721 -0.5402 0.3515 31 1 5.0756 0.7304 2.3042 32 1 3.4821 0.5808 3.2204 33 1 3.6643 -1.9476 3.1244 34 1 5.2577 -1.7981 2.2079 35 1 2.2490 -1.6318 -1.1527 36 1 2.5425 0.8906 -4.7822 37 1 4.2606 -1.1331 -5.7457 38 1 2.5888 -1.5636 -6.1796 39 1 2.3134 0.6340 -7.2954 40 1 3.9852 1.0638 -6.8611 41 1 4.8211 -0.8721 -8.1664 42 1 3.1491 -1.3013 -8.6003 43 1 4.9738 -1.4866 -11.7940 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343143538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:41 Heat of formation + Delta-G solvation = -75.121029 kcal Electronic energy + Delta-G solvation = -21340.336820 eV Core-core repulsion = 17999.412118 eV Total energy + Delta-G solvation = -3340.924702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.69978 -38.90626 -37.94177 -35.97539 -35.38188 -33.34317 -31.62302 -31.24215 -27.91478 -27.24362 -24.91333 -22.91011 -22.74611 -21.56287 -20.82335 -20.72018 -20.18430 -18.37048 -17.02448 -16.39202 -16.13362 -15.93158 -15.72102 -15.04490 -14.97207 -14.55525 -14.44392 -13.87732 -13.59572 -13.56719 -13.17253 -12.77443 -12.45455 -12.30945 -11.89799 -11.88659 -11.79762 -11.66143 -11.60690 -11.47841 -10.91451 -10.76068 -10.60806 -10.59315 -10.29279 -9.90322 -9.76912 -9.46593 -9.36195 -9.13256 -8.97316 -8.38153 -6.02940 -4.05897 1.44165 2.36489 3.24588 3.30993 3.37346 3.39914 3.40622 3.67791 4.11253 4.40454 4.43759 4.52684 4.54591 4.72075 4.80678 4.96511 5.10788 5.27120 5.29723 5.31878 5.33048 5.41647 5.54585 5.59663 5.65715 5.69230 5.74902 5.87702 5.89842 6.08116 6.11245 6.27843 6.54090 6.69873 6.94934 6.95608 7.42855 7.61545 7.73204 7.75352 7.95489 8.06645 8.36751 9.00635 9.58439 11.08331 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033352 B = 0.002375 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.340032 B =11786.695348 C =12038.881827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 H 0.094 0.906 4 C -0.096 4.096 5 C -0.158 4.158 6 C -0.180 4.180 7 C -0.180 4.180 8 N -0.698 5.698 9 C 0.509 3.491 10 O -0.521 6.521 11 C 0.499 3.501 12 O -0.527 6.527 13 N -0.692 5.692 14 C 0.114 3.886 15 C -0.123 4.123 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.412 0.588 36 H 0.411 0.589 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 0.762 27.424 28.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.038 3.962 3 H 0.112 0.888 4 C -0.134 4.134 5 C -0.176 4.176 6 C -0.217 4.217 7 C -0.217 4.217 8 N -0.352 5.352 9 C 0.290 3.710 10 O -0.396 6.396 11 C 0.278 3.722 12 O -0.404 6.404 13 N -0.343 5.343 14 C -0.008 4.008 15 C -0.161 4.161 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.249 0.751 36 H 0.247 0.753 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.560 0.646 27.272 27.840 hybrid contribution 0.135 0.562 -0.879 1.052 sum -5.426 1.208 26.393 26.972 Atomic orbital electron populations 1.22198 0.94735 1.02528 1.02944 1.21063 0.94190 0.97799 0.83151 0.88820 1.21509 0.93219 1.01343 0.97295 1.22359 0.94956 1.05515 0.94754 1.23043 1.03218 0.94475 1.00963 1.22969 1.02272 0.94533 1.01922 1.45882 1.65593 1.14951 1.08780 1.20342 0.78817 0.87002 0.84840 1.90754 1.48585 1.15401 1.84876 1.20060 0.80168 0.87167 0.84756 1.90757 1.49326 1.15281 1.85018 1.46077 1.63925 1.15037 1.09299 1.21840 0.99638 0.96444 0.82918 1.21926 1.01433 0.97822 0.94882 1.19033 0.96572 0.95749 0.89983 1.21200 1.44025 0.96379 0.94468 0.92569 1.25032 0.95346 0.95195 0.98914 1.69966 1.44369 1.15294 1.23684 0.86569 0.78402 0.81048 0.81832 1.20646 1.21210 1.19864 0.92151 0.91328 0.91707 0.90630 0.89918 0.87523 0.88866 0.88752 0.88771 0.88757 0.75137 0.75327 0.91124 0.91105 0.92432 0.92438 0.96208 0.96192 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 9.48 37.16 0.35 -0.85 16 2 C 0.14 1.12 2.56 -67.93 -0.17 0.94 16 3 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 4 C -0.10 -0.56 5.03 -26.73 -0.13 -0.70 16 5 C -0.16 -1.10 5.61 -90.61 -0.51 -1.61 16 6 C -0.18 -1.15 10.18 -26.73 -0.27 -1.43 16 7 C -0.18 -1.13 10.25 -26.73 -0.27 -1.41 16 8 N -0.70 -6.82 4.50 -54.24 -0.24 -7.06 16 9 C 0.51 6.58 7.85 -11.58 -0.09 6.49 16 10 O -0.52 -7.68 16.14 5.50 0.09 -7.59 16 11 C 0.50 7.43 7.89 -11.58 -0.09 7.34 16 12 O -0.53 -8.91 16.48 5.50 0.09 -8.81 16 13 N -0.69 -10.41 5.55 -60.73 -0.34 -10.74 16 14 C 0.11 1.96 5.67 -4.04 -0.02 1.93 16 15 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 21 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.39 7.88 -51.93 -0.41 -0.02 16 30 H 0.11 0.91 7.69 -51.93 -0.40 0.51 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.52 8.03 -51.93 -0.42 0.10 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.41 3.69 8.07 -40.82 -0.33 3.36 16 36 H 0.41 5.66 7.95 -40.82 -0.32 5.34 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -31.62 365.25 -8.40 -40.02 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.31 Total: 2.87 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.91 Total: -4.71 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.16 Total: -43.78 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.18 Total: -16.40 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.62 -8.40 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343143538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.103 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds