Wall clock time and date at job start Tue Mar 31 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47252 * 2 1 4 4 C 1.52999 * 109.47579 * 239.99962 * 2 1 3 5 5 C 1.53002 * 109.47371 * 174.99729 * 4 2 1 6 6 C 1.52993 * 117.50171 * 243.62483 * 5 4 2 7 7 C 1.52998 * 117.49616 * 174.99643 * 5 4 2 8 8 N 1.46500 * 109.46961 * 119.99594 * 2 1 3 9 9 C 1.34773 * 120.00432 * 275.00011 * 8 2 1 10 10 O 1.21353 * 120.00047 * 0.02562 * 9 8 2 11 11 C 1.49454 * 120.00135 * 179.72278 * 9 8 2 12 12 O 1.21343 * 119.99752 * 0.28157 * 11 9 8 13 13 N 1.34777 * 120.00164 * 180.27489 * 11 9 8 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.46959 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47271 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47207 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00286 * 359.97438 * 17 16 15 19 19 C 1.37885 * 120.00114 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99465 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00149 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47198 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47092 * 120.00157 * 21 19 17 24 24 H 1.48502 * 109.47241 * 239.99916 * 21 19 17 25 25 H 1.09002 * 109.46828 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46936 * 300.00144 * 1 2 3 27 27 H 1.09003 * 109.47063 * 60.00023 * 1 2 3 28 28 H 1.09003 * 109.47199 * 295.00244 * 4 2 1 29 29 H 1.09003 * 109.46960 * 54.99590 * 4 2 1 30 30 H 1.09000 * 115.54651 * 29.33567 * 5 4 2 31 31 H 1.09001 * 117.49649 * 359.97438 * 6 5 4 32 32 H 1.08992 * 117.49846 * 145.02406 * 6 5 4 33 33 H 1.08998 * 117.49933 * 214.98198 * 7 5 4 34 34 H 1.08997 * 117.50152 * 359.97438 * 7 5 4 35 35 H 0.97001 * 119.99454 * 95.00746 * 8 2 1 36 36 H 0.97000 * 119.99555 * 0.02562 * 13 11 9 37 37 H 1.08994 * 109.46952 * 300.00262 * 14 13 11 38 38 H 1.08998 * 109.47023 * 60.00193 * 14 13 11 39 39 H 1.09000 * 109.47439 * 300.00104 * 15 14 13 40 40 H 1.08998 * 109.47408 * 60.00046 * 15 14 13 41 41 H 1.09008 * 109.46645 * 299.99994 * 16 15 14 42 42 H 1.08998 * 109.47049 * 59.99604 * 16 15 14 43 43 H 0.96997 * 119.99506 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 6 4.1698 0.1514 -2.4927 7 6 4.2803 -1.3735 -2.4321 8 7 2.0183 -0.6905 1.1962 9 6 2.1470 -0.0182 2.3572 10 8 1.8580 1.1591 2.4118 11 6 2.6393 -0.7242 3.5790 12 8 2.9279 -1.9016 3.5245 13 7 2.7627 -0.0532 4.7413 14 6 3.2458 -0.7452 5.9388 15 6 3.2913 0.2364 7.1115 16 6 3.7964 -0.4860 8.3621 17 6 3.8406 0.4807 9.5172 18 1 3.5391 1.5078 9.3738 19 6 4.2661 0.0540 10.7575 20 7 4.6338 -1.1966 10.9320 21 14 4.3216 1.2524 12.1892 22 1 3.8609 2.5888 11.7342 23 1 3.4337 0.7668 13.2759 24 1 5.7138 1.3543 12.6958 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7517 -1.7715 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 4.0720 -0.5386 -0.3516 31 1 3.4815 0.5772 -3.2228 32 1 5.0750 0.7294 -2.3065 33 1 5.2582 -1.7986 -2.2062 34 1 3.6648 -1.9509 -3.1218 35 1 2.2490 -1.6317 1.1526 36 1 2.5317 0.8879 4.7849 37 1 2.5723 -1.5675 6.1798 38 1 4.2459 -1.1370 5.7535 39 1 3.9646 1.0592 6.8708 40 1 2.2911 0.6279 7.2967 41 1 3.1234 -1.3089 8.6030 42 1 4.7967 -0.8771 8.1766 43 1 4.9327 -1.4969 11.8045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343143539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:43 Heat of formation + Delta-G solvation = -75.155812 kcal Electronic energy + Delta-G solvation = -21339.797870 eV Core-core repulsion = 17998.871660 eV Total energy + Delta-G solvation = -3340.926210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.69993 -38.90704 -37.94215 -35.97575 -35.38231 -33.34418 -31.62338 -31.24293 -27.91452 -27.24470 -24.91419 -22.91123 -22.74720 -21.56273 -20.82420 -20.72097 -20.18496 -18.37097 -17.02427 -16.39457 -16.13508 -15.93176 -15.72153 -15.04539 -14.97299 -14.55519 -14.44059 -13.87764 -13.59593 -13.56626 -13.17328 -12.77486 -12.45457 -12.31828 -11.89822 -11.88376 -11.79845 -11.66139 -11.60689 -11.47809 -10.93260 -10.76309 -10.59637 -10.58080 -10.29389 -9.90737 -9.77062 -9.46631 -9.36274 -9.12010 -8.97348 -8.38596 -6.03211 -4.06048 1.44162 2.36474 3.24589 3.29941 3.37540 3.39933 3.41525 3.67787 4.11236 4.40403 4.43710 4.52662 4.54574 4.72044 4.80649 4.96511 5.10774 5.27102 5.29680 5.31871 5.32877 5.41622 5.54556 5.59626 5.65687 5.69204 5.74876 5.87693 5.89808 6.08092 6.11215 6.27838 6.54046 6.69857 6.94911 6.95604 7.42847 7.61638 7.73057 7.75347 7.95413 8.06652 8.36674 9.00732 9.58340 11.08142 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033458 B = 0.002374 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.670729 B =11793.082982 C =12045.034526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 H 0.094 0.906 4 C -0.096 4.096 5 C -0.158 4.158 6 C -0.180 4.180 7 C -0.180 4.180 8 N -0.698 5.698 9 C 0.509 3.491 10 O -0.521 6.521 11 C 0.499 3.501 12 O -0.527 6.527 13 N -0.692 5.692 14 C 0.114 3.886 15 C -0.123 4.123 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.412 0.588 36 H 0.411 0.589 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 0.794 -27.459 28.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.038 3.962 3 H 0.112 0.888 4 C -0.134 4.134 5 C -0.176 4.176 6 C -0.217 4.217 7 C -0.217 4.217 8 N -0.352 5.352 9 C 0.290 3.710 10 O -0.396 6.396 11 C 0.279 3.721 12 O -0.404 6.404 13 N -0.343 5.343 14 C -0.008 4.008 15 C -0.161 4.161 16 C -0.014 4.014 17 C -0.560 4.560 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.249 0.751 36 H 0.247 0.753 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.474 0.684 -27.311 27.863 hybrid contribution 0.124 0.546 0.888 1.049 sum -5.350 1.229 -26.423 26.987 Atomic orbital electron populations 1.22198 0.94731 1.02528 1.02945 1.21064 0.94193 0.97800 0.83149 0.88820 1.21511 0.93219 1.01344 0.97297 1.22356 0.94957 1.05507 0.94755 1.23044 1.03221 0.94491 1.00939 1.22967 1.02268 0.94522 1.01949 1.45879 1.65574 1.14945 1.08799 1.20342 0.78808 0.87007 0.84846 1.90756 1.48524 1.15430 1.84914 1.20057 0.80154 0.87168 0.84770 1.90756 1.49223 1.15303 1.85101 1.46075 1.64036 1.15050 1.09175 1.21838 0.99705 0.96426 0.82872 1.21925 1.01431 0.97839 0.94865 1.19039 0.96599 0.95754 0.89983 1.21240 1.43992 0.96466 0.94289 0.92514 1.25037 0.95343 0.95205 0.98946 1.69977 1.44530 1.15306 1.23499 0.86512 0.77653 0.81285 0.82412 1.19726 1.21003 1.20995 0.92153 0.91704 0.91326 0.90632 0.89916 0.87522 0.88751 0.88864 0.88762 0.88770 0.75138 0.75328 0.91112 0.91115 0.92439 0.92430 0.96196 0.96194 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 9.48 37.16 0.35 -0.85 16 2 C 0.14 1.12 2.56 -67.93 -0.17 0.94 16 3 H 0.09 0.87 7.58 -51.92 -0.39 0.48 16 4 C -0.10 -0.56 5.03 -26.73 -0.13 -0.70 16 5 C -0.16 -1.10 5.61 -90.62 -0.51 -1.61 16 6 C -0.18 -1.15 10.18 -26.73 -0.27 -1.43 16 7 C -0.18 -1.13 10.25 -26.73 -0.27 -1.41 16 8 N -0.70 -6.82 4.50 -54.23 -0.24 -7.06 16 9 C 0.51 6.58 7.85 -11.59 -0.09 6.49 16 10 O -0.52 -7.68 16.14 5.49 0.09 -7.59 16 11 C 0.50 7.43 7.89 -11.58 -0.09 7.34 16 12 O -0.53 -8.90 16.48 5.50 0.09 -8.81 16 13 N -0.69 -10.40 5.55 -60.74 -0.34 -10.74 16 14 C 0.11 1.96 5.67 -4.04 -0.02 1.93 16 15 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.60 5.46 -17.81 -0.10 1.50 16 20 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 21 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.39 7.88 -51.93 -0.41 -0.02 16 30 H 0.11 0.91 7.69 -51.93 -0.40 0.51 16 31 H 0.09 0.52 8.03 -51.93 -0.42 0.10 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.41 3.69 8.07 -40.82 -0.33 3.36 16 36 H 0.41 5.66 7.94 -40.82 -0.32 5.34 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -31.64 365.25 -8.40 -40.04 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.31 Total: 2.84 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.91 Total: -4.70 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.16 Total: -43.78 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.18 Total: -16.40 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.64 -8.40 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343143539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.115 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds