Wall clock time and date at job start Tue Mar 31 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47252 * 2 1 4 4 C 1.52999 * 109.47579 * 239.99962 * 2 1 3 5 5 C 1.53002 * 109.47371 * 174.99729 * 4 2 1 6 6 C 1.52993 * 117.50171 * 243.62483 * 5 4 2 7 7 C 1.52998 * 117.49616 * 174.99643 * 5 4 2 8 8 N 1.46500 * 109.46961 * 119.99594 * 2 1 3 9 9 C 1.34773 * 120.00432 * 275.00011 * 8 2 1 10 10 O 1.21353 * 120.00047 * 0.02562 * 9 8 2 11 11 C 1.49454 * 120.00135 * 179.72278 * 9 8 2 12 12 O 1.21343 * 119.99752 * 0.28157 * 11 9 8 13 13 N 1.34777 * 120.00164 * 180.27489 * 11 9 8 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.46959 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47271 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47207 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00286 * 359.97438 * 17 16 15 19 19 C 1.37885 * 120.00114 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99465 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00149 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47198 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47092 * 120.00157 * 21 19 17 24 24 H 1.48502 * 109.47241 * 239.99916 * 21 19 17 25 25 H 1.09002 * 109.46828 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46936 * 300.00144 * 1 2 3 27 27 H 1.09003 * 109.47063 * 60.00023 * 1 2 3 28 28 H 1.09003 * 109.47199 * 295.00244 * 4 2 1 29 29 H 1.09003 * 109.46960 * 54.99590 * 4 2 1 30 30 H 1.09000 * 115.54651 * 29.33567 * 5 4 2 31 31 H 1.09001 * 117.49649 * 359.97438 * 6 5 4 32 32 H 1.08992 * 117.49846 * 145.02406 * 6 5 4 33 33 H 1.08998 * 117.49933 * 214.98198 * 7 5 4 34 34 H 1.08997 * 117.50152 * 359.97438 * 7 5 4 35 35 H 0.97001 * 119.99454 * 95.00746 * 8 2 1 36 36 H 0.97000 * 119.99555 * 0.02562 * 13 11 9 37 37 H 1.08994 * 109.46952 * 300.00262 * 14 13 11 38 38 H 1.08998 * 109.47023 * 60.00193 * 14 13 11 39 39 H 1.09000 * 109.47439 * 300.00104 * 15 14 13 40 40 H 1.08998 * 109.47408 * 60.00046 * 15 14 13 41 41 H 1.09008 * 109.46645 * 299.99994 * 16 15 14 42 42 H 1.08998 * 109.47049 * 59.99604 * 16 15 14 43 43 H 0.96997 * 119.99506 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 6 4.1698 0.1514 -2.4927 7 6 4.2803 -1.3735 -2.4321 8 7 2.0183 -0.6905 1.1962 9 6 2.1470 -0.0182 2.3572 10 8 1.8580 1.1591 2.4118 11 6 2.6393 -0.7242 3.5790 12 8 2.9279 -1.9016 3.5245 13 7 2.7627 -0.0532 4.7413 14 6 3.2458 -0.7452 5.9388 15 6 3.2913 0.2364 7.1115 16 6 3.7964 -0.4860 8.3621 17 6 3.8406 0.4807 9.5172 18 1 3.5391 1.5078 9.3738 19 6 4.2661 0.0540 10.7575 20 7 4.6338 -1.1966 10.9320 21 14 4.3216 1.2524 12.1892 22 1 3.8609 2.5888 11.7342 23 1 3.4337 0.7668 13.2759 24 1 5.7138 1.3543 12.6958 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7517 -1.7715 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 4.0720 -0.5386 -0.3516 31 1 3.4815 0.5772 -3.2228 32 1 5.0750 0.7294 -2.3065 33 1 5.2582 -1.7986 -2.2062 34 1 3.6648 -1.9509 -3.1218 35 1 2.2490 -1.6317 1.1526 36 1 2.5317 0.8879 4.7849 37 1 2.5723 -1.5675 6.1798 38 1 4.2459 -1.1370 5.7535 39 1 3.9646 1.0592 6.8708 40 1 2.2911 0.6279 7.2967 41 1 3.1234 -1.3089 8.6030 42 1 4.7967 -0.8771 8.1766 43 1 4.9327 -1.4969 11.8045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343143539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:43 Heat of formation + Delta-G solvation = -95.843664 kcal Electronic energy + Delta-G solvation = -21340.694962 eV Core-core repulsion = 17998.871660 eV Total energy + Delta-G solvation = -3341.823303 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.78422 -39.93366 -38.67087 -37.21842 -36.43091 -35.21298 -33.05476 -32.40838 -28.98151 -28.43625 -26.34541 -24.45105 -23.24792 -22.39386 -22.32613 -21.38307 -21.33156 -19.53128 -18.51410 -18.01986 -17.21432 -16.84617 -16.69299 -16.44612 -16.13464 -15.99683 -15.44219 -15.07048 -14.79272 -14.29950 -14.18605 -13.80803 -13.77509 -13.53558 -13.35272 -13.08500 -12.79081 -12.78843 -12.55171 -12.37750 -12.36020 -12.16194 -12.09461 -11.71247 -11.56612 -11.22551 -11.12081 -10.79707 -10.67799 -10.55967 -10.34757 -10.25925 -8.20164 -6.30924 0.31342 1.30248 1.41437 1.42020 1.55067 2.11172 2.41285 2.63414 2.90997 3.13811 3.39961 3.59188 3.88303 4.05028 4.07587 4.16696 4.17315 4.22858 4.39898 4.51666 4.57541 4.73107 4.80480 4.81428 4.86278 4.90669 4.92336 5.02985 5.07750 5.14102 5.21956 5.27407 5.28740 5.35612 5.39136 5.51230 5.69996 5.83967 5.91268 6.22545 6.34094 6.71775 6.86213 6.92092 7.38437 8.92014 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033458 B = 0.002374 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.670729 B =11793.082982 C =12045.034526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.080 0.920 4 C -0.086 4.086 5 C -0.168 4.168 6 C -0.182 4.182 7 C -0.178 4.178 8 N -0.682 5.682 9 C 0.514 3.486 10 O -0.541 6.541 11 C 0.499 3.501 12 O -0.548 6.548 13 N -0.687 5.687 14 C 0.127 3.873 15 C -0.106 4.106 16 C 0.025 3.975 17 C -0.541 4.541 18 H 0.064 0.936 19 C -0.003 4.003 20 N -0.933 5.933 21 Si 0.966 3.034 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.418 0.582 36 H 0.419 0.581 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.067 0.933 41 H -0.004 1.004 42 H -0.004 1.004 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.393 1.740 -28.934 29.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.099 0.901 4 C -0.123 4.123 5 C -0.187 4.187 6 C -0.219 4.219 7 C -0.214 4.214 8 N -0.335 5.335 9 C 0.295 3.705 10 O -0.419 6.419 11 C 0.280 3.720 12 O -0.427 6.427 13 N -0.339 5.339 14 C 0.004 3.996 15 C -0.144 4.144 16 C -0.013 4.013 17 C -0.579 4.579 18 H 0.082 0.918 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.185 1.185 23 H -0.205 1.205 24 H -0.205 1.205 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.255 0.745 36 H 0.256 0.744 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.337 1.633 -28.828 29.562 hybrid contribution 0.406 0.206 1.279 1.358 sum -5.930 1.840 -27.549 28.240 Atomic orbital electron populations 1.22171 0.93809 1.03120 1.02903 1.21245 0.94819 0.97238 0.82988 0.90146 1.21480 0.92265 1.01907 0.96692 1.22336 0.95690 1.06505 0.94143 1.23123 1.03264 0.94643 1.00825 1.23030 1.02196 0.94613 1.01605 1.45931 1.64022 1.15132 1.08414 1.19924 0.79057 0.86639 0.84925 1.90753 1.49911 1.16055 1.85136 1.20427 0.79436 0.86911 0.85218 1.90745 1.50114 1.16289 1.85506 1.45893 1.63994 1.15372 1.08680 1.21471 0.99366 0.95674 0.83078 1.21637 1.01773 0.97772 0.93176 1.18939 0.94974 0.95217 0.92190 1.21703 1.43668 0.97190 0.95314 0.91790 1.25996 0.94922 0.97013 1.02113 1.70107 1.45528 1.17355 1.24380 0.85380 0.77770 0.79199 0.78580 1.18457 1.20518 1.20516 0.91224 0.93943 0.89182 0.89497 0.87909 0.89531 0.87431 0.89442 0.89197 0.87434 0.74499 0.74388 0.91741 0.91781 0.91499 0.91460 0.98520 0.98532 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.48 71.98 0.68 -1.34 16 2 C 0.14 1.99 2.56 44.99 0.12 2.10 16 3 H 0.08 1.41 7.58 -2.38 -0.02 1.39 16 4 C -0.09 -0.80 5.03 30.59 0.15 -0.64 16 5 C -0.17 -2.12 5.61 -10.80 -0.06 -2.18 16 6 C -0.18 -2.05 10.18 30.59 0.31 -1.74 16 7 C -0.18 -1.95 10.25 30.60 0.31 -1.63 16 8 N -0.68 -12.66 4.50 -443.86 -2.00 -14.65 16 9 C 0.51 13.00 7.85 87.27 0.69 13.69 16 10 O -0.54 -15.66 16.14 -3.26 -0.05 -15.72 16 11 C 0.50 14.69 7.89 87.27 0.69 15.38 16 12 O -0.55 -18.42 16.48 -3.23 -0.05 -18.47 16 13 N -0.69 -20.34 5.55 -464.43 -2.58 -22.92 16 14 C 0.13 4.39 5.67 86.38 0.49 4.88 16 15 C -0.11 -4.09 5.27 30.59 0.16 -3.93 16 16 C 0.02 1.26 4.97 29.85 0.15 1.41 16 17 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 18 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 19 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 20 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 21 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.61 7.88 -2.39 -0.02 0.59 16 30 H 0.09 1.45 7.69 -2.39 -0.02 1.43 16 31 H 0.11 0.92 8.03 -2.39 -0.02 0.90 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.42 7.00 8.07 -92.71 -0.75 6.25 16 36 H 0.42 11.17 7.94 -92.71 -0.74 10.44 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 42 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -68.00 365.25 1.53 -66.47 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.48 Total: 19.36 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 4.39 Total: -3.73 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -4.29 Total: -93.97 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.11 Total: -34.19 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -68.00 1.53 -66.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343143539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.372 kcal (2) G-P(sol) polarization free energy of solvation -68.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds