Wall clock time and date at job start Tue Mar 31 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47169 * 2 1 4 4 C 1.46493 * 120.00172 * 269.99589 * 3 2 1 5 5 C 1.50695 * 109.47940 * 270.00391 * 4 3 2 6 6 H 1.08006 * 119.99385 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00923 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00727 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99615 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47130 * 90.00405 * 9 7 5 11 11 H 1.48496 * 109.47505 * 210.00422 * 9 7 5 12 12 H 1.48503 * 109.47192 * 330.00592 * 9 7 5 13 13 C 1.34781 * 119.99969 * 90.00368 * 3 2 1 14 14 O 1.21273 * 120.00031 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99726 * 359.97438 * 13 3 2 16 16 N 1.46500 * 109.47163 * 180.02562 * 15 13 3 17 17 C 1.47196 * 119.78556 * 270.00019 * 16 15 13 18 18 C 1.52982 * 108.66360 * 108.04035 * 17 16 15 19 19 C 1.51776 * 110.88512 * 86.47127 * 18 17 16 20 20 C 1.51797 * 113.80884 * 292.99518 * 19 18 17 21 21 C 1.53059 * 110.74154 * 66.80523 * 20 19 18 22 22 C 1.33371 * 119.78951 * 89.99920 * 16 15 13 23 23 O 1.21273 * 119.88937 * 0.55603 * 22 16 15 24 24 H 1.08999 * 109.47009 * 300.00055 * 1 2 3 25 25 H 1.09010 * 109.47253 * 59.99951 * 1 2 3 26 26 H 1.09001 * 109.47558 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47009 * 239.99945 * 2 1 3 28 28 H 1.09002 * 109.46771 * 120.00413 * 2 1 3 29 29 H 1.09002 * 109.47060 * 30.00660 * 4 3 2 30 30 H 1.09005 * 109.47075 * 149.99824 * 4 3 2 31 31 H 0.96996 * 120.00512 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47495 * 60.00268 * 15 13 3 33 33 H 1.09000 * 109.47199 * 300.00116 * 15 13 3 34 34 H 1.09000 * 109.60617 * 348.28608 * 17 16 15 35 35 H 1.08995 * 109.60580 * 227.79508 * 17 16 15 36 36 H 1.09000 * 109.19832 * 326.10366 * 18 17 16 37 37 H 1.09005 * 109.15447 * 206.80667 * 18 17 16 38 38 H 1.08997 * 108.61568 * 171.87622 * 19 18 17 39 39 H 1.08996 * 108.61753 * 54.11401 * 19 18 17 40 40 H 1.09004 * 109.21915 * 306.48090 * 20 19 18 41 41 H 1.08994 * 109.22330 * 187.13540 * 20 19 18 42 42 H 1.09003 * 109.63386 * 155.38914 * 21 20 19 43 43 H 1.08999 * 109.79996 * 34.88481 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2686 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0957 7 6 4.1495 2.3904 -2.8774 8 7 5.3916 2.1842 -3.2568 9 14 3.0132 3.4360 -3.9286 10 1 3.1159 4.8561 -3.5068 11 1 3.4067 3.3138 -5.3553 12 1 1.6136 2.9694 -3.7595 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1600 1.1673 15 6 1.9913 1.3062 2.4723 16 7 2.3083 2.2039 3.5859 17 6 3.6709 2.2260 4.1422 18 6 4.3476 3.5339 3.7277 19 6 4.0260 4.6447 4.7107 20 6 2.5664 5.0617 4.7080 21 6 1.6789 3.9319 5.2358 22 6 1.3603 2.9957 4.0891 23 8 0.2384 2.9622 3.6299 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.5817 1.6877 -2.0283 30 1 2.0955 3.1410 -1.1383 31 1 5.7177 2.5747 -4.0827 32 1 2.6212 0.4185 2.5302 33 1 0.9433 1.0125 2.5299 34 1 4.2387 1.3810 3.7528 35 1 3.6230 2.1676 5.2295 36 1 3.9973 3.8203 2.7361 37 1 5.4269 3.3841 3.6969 38 1 4.6366 5.5138 4.4657 39 1 4.2901 4.3093 5.7135 40 1 2.2656 5.3086 3.6898 41 1 2.4431 5.9405 5.3409 42 1 0.7545 4.3487 5.6357 43 1 2.2036 3.3857 6.0196 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343871277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:43 Heat of formation + Delta-G solvation = -74.187773 kcal Electronic energy + Delta-G solvation = -23745.082602 eV Core-core repulsion = 20404.198369 eV Total energy + Delta-G solvation = -3340.884233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.49001 -38.73969 -36.56693 -35.38780 -34.46703 -32.70868 -30.98770 -30.35958 -29.23086 -27.39076 -25.65179 -23.85542 -22.95458 -22.21532 -20.54583 -19.10619 -18.25453 -17.20447 -16.91760 -16.61946 -16.56085 -15.23454 -14.86146 -14.64115 -14.15334 -14.10482 -13.62072 -13.51657 -13.43978 -13.43041 -13.03134 -12.60965 -12.44576 -12.30177 -12.15123 -11.92166 -11.70048 -11.44354 -11.28277 -10.96126 -10.81176 -10.75659 -10.60891 -10.52537 -10.49052 -10.14554 -9.56502 -9.55379 -9.31299 -8.59023 -8.40047 -7.69879 -6.09420 -4.07687 2.74392 3.06828 3.29557 3.35400 3.35883 3.38466 3.92552 4.39862 4.50969 4.75171 4.81391 4.84207 5.00880 5.18288 5.24675 5.28495 5.31770 5.37161 5.39518 5.43995 5.53988 5.62532 5.67789 5.74738 5.79127 5.95704 5.99976 6.02367 6.13185 6.18115 6.23589 6.42556 6.48606 6.66206 6.74560 6.97929 7.37841 7.50458 7.61798 8.24029 8.34759 8.46998 8.92201 9.00877 9.51702 11.03884 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018004 B = 0.005564 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.852755 B = 5031.415440 C = 5753.382526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.592 5.592 4 C 0.217 3.783 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.495 3.505 14 O -0.530 6.530 15 C 0.092 3.908 16 N -0.588 5.588 17 C 0.116 3.884 18 C -0.157 4.157 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.133 4.133 22 C 0.521 3.479 23 O -0.552 6.552 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.220 -2.395 16.981 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.324 5.324 4 C 0.096 3.904 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.129 4.129 8 N -0.537 5.537 9 Si 0.702 3.298 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.280 3.720 14 O -0.407 6.407 15 C -0.035 4.035 16 N -0.320 5.320 17 C -0.006 4.006 18 C -0.195 4.195 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.173 4.173 22 C 0.309 3.691 23 O -0.430 6.430 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.451 -1.757 16.584 17.545 hybrid contribution -0.283 0.445 -0.797 0.955 sum -5.734 -1.312 15.787 16.847 Atomic orbital electron populations 1.22249 0.96647 1.01588 1.02540 1.21452 0.93555 0.83783 1.02976 1.47929 1.64181 1.13391 1.06947 1.19626 0.97214 0.93386 0.80127 1.21312 0.95290 1.32753 1.07062 0.90820 1.24836 0.94964 0.95798 0.97350 1.69888 1.15113 1.45104 1.23601 0.86868 0.81567 0.81623 0.79756 1.19975 1.21071 1.19069 1.20723 0.78474 0.87394 0.85360 1.90590 1.45335 1.17868 1.86860 1.21501 1.03890 0.92669 0.85421 1.47457 1.11214 1.40437 1.32873 1.21831 0.81576 0.99184 0.98019 1.21983 1.00619 0.94292 1.02643 1.21108 0.95882 0.99037 0.99188 1.21223 0.94601 0.96812 1.02581 1.21955 1.02300 0.96739 0.96315 1.20484 0.84219 0.80016 0.84358 1.90689 1.22099 1.67639 1.62618 0.92675 0.92230 0.91955 0.89644 0.91576 0.95328 0.94718 0.92598 0.88097 0.87477 0.89801 0.90748 0.87871 0.91020 0.91858 0.92514 0.90930 0.91078 0.88859 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.59 -12.27 2.46 -175.07 -0.43 -12.70 16 4 C 0.22 5.39 4.23 -5.20 -0.02 5.37 16 5 C -0.53 -15.02 9.94 -34.44 -0.34 -15.37 16 6 H 0.07 2.29 8.06 -52.48 -0.42 1.86 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 9 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 16 10 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 13 C 0.50 10.18 7.74 -10.98 -0.08 10.10 16 14 O -0.53 -12.89 13.80 5.56 0.08 -12.81 16 15 C 0.09 1.41 4.42 -5.19 -0.02 1.39 16 16 N -0.59 -8.57 1.97 -174.61 -0.34 -8.91 16 17 C 0.12 1.33 5.91 -3.67 -0.02 1.31 16 18 C -0.16 -2.04 5.73 -27.36 -0.16 -2.20 16 19 C -0.11 -1.22 5.27 -27.96 -0.15 -1.37 16 20 C -0.11 -1.31 5.67 -27.31 -0.15 -1.47 16 21 C -0.13 -1.51 5.56 -27.50 -0.15 -1.66 16 22 C 0.52 8.17 6.79 -11.25 -0.08 8.09 16 23 O -0.55 -10.84 16.59 5.56 0.09 -10.74 16 24 H 0.05 0.77 7.22 -51.93 -0.37 0.39 16 25 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 29 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 30 H 0.03 0.94 6.85 -51.93 -0.36 0.58 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.10 1.24 7.11 -51.93 -0.37 0.87 16 33 H 0.11 1.61 6.41 -51.93 -0.33 1.28 16 34 H 0.08 0.88 7.77 -51.93 -0.40 0.48 16 35 H 0.07 0.63 6.71 -51.93 -0.35 0.29 16 36 H 0.10 1.85 5.70 -51.93 -0.30 1.55 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.47 7.89 -51.93 -0.41 0.06 16 40 H 0.07 1.08 7.86 -51.93 -0.41 0.67 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.00 8.13 -51.93 -0.42 0.58 16 43 H 0.09 0.75 6.79 -51.93 -0.35 0.39 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -35.97 337.07 -7.24 -43.21 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.90 Total: 0.60 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.92 Total: 5.90 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.00 Total: -48.45 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.17 Total: -23.55 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.97 -7.24 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343871277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.975 kcal (2) G-P(sol) polarization free energy of solvation -35.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds