Wall clock time and date at job start Tue Mar 31 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47197 * 2 1 4 4 C 1.46496 * 119.99658 * 93.84010 * 3 2 1 5 5 C 1.50697 * 109.47514 * 84.84443 * 4 3 2 6 6 H 1.07999 * 119.99890 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00001 * 179.97438 * 5 4 3 8 8 N 1.31504 * 120.00120 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99862 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47347 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47414 * 120.00137 * 9 7 5 12 12 H 1.48502 * 109.47408 * 240.00486 * 9 7 5 13 13 C 1.34770 * 119.99920 * 273.83202 * 3 2 1 14 14 O 1.21280 * 120.00116 * 5.08503 * 13 3 2 15 15 C 1.50700 * 120.00110 * 185.07978 * 13 3 2 16 16 H 1.09007 * 109.46515 * 40.98649 * 15 13 3 17 17 C 1.52996 * 109.47250 * 280.98577 * 15 13 3 18 18 C 1.53005 * 109.47191 * 179.97438 * 17 15 13 19 19 C 1.52990 * 109.47101 * 59.99739 * 18 17 15 20 20 C 1.53004 * 109.47440 * 300.00397 * 19 18 17 21 21 H 1.08997 * 109.46762 * 179.97438 * 20 19 18 22 22 C 1.50701 * 109.46836 * 299.99558 * 20 19 18 23 23 N 1.34771 * 120.00297 * 300.00486 * 22 20 19 24 24 O 1.21282 * 119.99820 * 119.99841 * 22 20 19 25 25 C 1.52991 * 109.47175 * 59.99675 * 20 19 18 26 26 H 1.08995 * 109.47659 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46795 * 300.00443 * 1 2 3 28 28 H 1.09000 * 109.47215 * 59.99514 * 1 2 3 29 29 H 1.08993 * 109.46885 * 120.00489 * 2 1 3 30 30 H 1.09005 * 109.46327 * 239.99809 * 2 1 3 31 31 H 1.09002 * 109.46845 * 204.84536 * 4 3 2 32 32 H 1.09000 * 109.47167 * 324.83897 * 4 3 2 33 33 H 0.97000 * 120.00475 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47244 * 299.99551 * 17 15 13 35 35 H 1.09003 * 109.46958 * 59.99992 * 17 15 13 36 36 H 1.09001 * 109.46900 * 180.02562 * 18 17 15 37 37 H 1.08998 * 109.46844 * 300.00021 * 18 17 15 38 38 H 1.09007 * 109.46980 * 60.00582 * 19 18 17 39 39 H 1.08997 * 109.47254 * 179.97438 * 19 18 17 40 40 H 0.97002 * 120.00024 * 359.97438 * 23 22 20 41 41 H 0.97000 * 120.00318 * 180.02562 * 23 22 20 42 42 H 1.09001 * 109.47250 * 180.02562 * 25 20 19 43 43 H 1.09001 * 109.47098 * 60.00728 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3426 2.0434 1.2659 5 6 3.7521 1.6942 1.6690 6 1 4.3470 1.0443 1.0444 7 6 4.2825 2.2052 2.8346 8 7 3.5582 2.9969 3.5948 9 14 6.0298 1.7729 3.3338 10 1 6.6274 0.8726 2.3151 11 1 6.8383 3.0147 3.4314 12 1 6.0132 1.0882 4.6514 13 6 2.1695 2.0425 -1.1645 14 8 1.8149 1.5285 -2.2042 15 6 2.7789 3.4207 -1.1749 16 1 3.6190 3.4517 -0.4810 17 6 1.7271 4.4467 -0.7484 18 6 2.3460 5.8459 -0.7582 19 6 2.8379 6.1760 -2.1688 20 6 3.8897 5.1500 -2.5954 21 1 4.2397 5.3851 -3.6005 22 6 5.0509 5.1925 -1.6358 23 7 5.7529 6.3320 -1.4774 24 8 5.3536 4.2013 -1.0059 25 6 3.2708 3.7509 -2.5855 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 2.2566 3.1231 1.1435 32 1 1.6503 1.7091 2.0386 33 1 3.9314 3.3568 4.4147 34 1 0.8870 4.4158 -1.4422 35 1 1.3770 4.2117 0.2568 36 1 1.5967 6.5768 -0.4539 37 1 3.1858 5.8766 -0.0642 38 1 1.9979 6.1454 -2.8629 39 1 3.2784 7.1730 -2.1760 40 1 5.5110 7.1247 -1.9813 41 1 6.5006 6.3592 -0.8600 42 1 4.0203 3.0199 -2.8889 43 1 2.4310 3.7202 -3.2796 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344841791.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:21 Heat of formation + Delta-G solvation = -98.031971 kcal Electronic energy + Delta-G solvation = -24237.624246 eV Core-core repulsion = 20895.706051 eV Total energy + Delta-G solvation = -3341.918195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.40086 -38.80380 -36.44326 -35.02551 -33.59188 -32.62842 -31.25665 -30.54474 -29.57789 -26.86031 -23.88030 -23.58500 -22.85115 -21.71634 -21.01725 -19.10230 -18.12393 -16.98708 -16.47730 -16.13570 -15.97812 -15.67581 -14.81399 -14.47008 -14.23687 -14.20673 -13.64761 -13.40915 -13.30904 -12.67631 -12.51410 -12.21092 -11.99418 -11.90248 -11.78364 -11.58816 -11.40189 -11.22181 -10.82955 -10.80100 -10.61458 -10.55437 -10.33298 -10.20407 -9.94727 -9.82127 -9.51069 -9.44021 -9.18187 -8.67136 -8.37890 -7.54380 -6.04103 -4.08337 2.96267 3.32490 3.39657 3.46779 3.60205 3.74269 4.12342 4.48228 4.84014 4.91597 4.95637 5.26140 5.29915 5.49280 5.56376 5.61900 5.64526 5.75076 5.81610 5.84294 5.94632 5.99973 6.09333 6.18523 6.29991 6.35680 6.37609 6.47818 6.51367 6.58080 6.73231 6.76608 6.92319 6.97916 7.15982 7.35979 7.53852 7.72853 7.91596 8.21539 8.54115 8.58607 8.96199 9.21942 9.58667 11.02822 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.011807 B = 0.008823 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.944117 B = 3172.876881 C = 4702.961713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.595 5.595 4 C 0.231 3.769 5 C -0.525 4.525 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.286 1.286 13 C 0.523 3.477 14 O -0.582 6.582 15 C -0.118 4.118 16 H 0.139 0.861 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.108 4.108 20 C -0.108 4.108 21 H 0.094 0.906 22 C 0.512 3.488 23 N -0.863 5.863 24 O -0.510 6.510 25 C -0.077 4.077 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.395 0.605 41 H 0.398 0.602 42 H 0.067 0.933 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.292 8.638 -9.721 13.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.007 4.007 3 N -0.325 5.325 4 C 0.112 3.888 5 C -0.563 4.563 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.212 1.212 13 C 0.312 3.688 14 O -0.465 6.465 15 C -0.139 4.139 16 H 0.156 0.844 17 C -0.148 4.148 18 C -0.157 4.157 19 C -0.146 4.146 20 C -0.129 4.129 21 H 0.112 0.888 22 C 0.297 3.703 23 N -0.427 5.427 24 O -0.384 6.384 25 C -0.115 4.115 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.223 0.777 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.427 7.689 -9.724 12.478 hybrid contribution 1.266 0.302 0.568 1.420 sum -0.161 7.991 -9.156 12.154 Atomic orbital electron populations 1.22099 0.97118 1.00991 1.01840 1.21190 0.93254 0.84162 1.02106 1.48238 1.62886 1.13095 1.08252 1.19582 0.96051 0.93893 0.79315 1.21512 0.98381 1.29873 1.06576 0.92167 1.24870 0.97749 0.94829 0.96151 1.69930 1.36695 1.32813 1.14024 0.86470 0.84808 0.78310 0.78062 1.19698 1.20996 1.21204 1.20518 0.77546 0.87749 0.82991 1.90538 1.52842 1.70447 1.32625 1.21562 1.01065 0.91637 0.99618 0.84400 1.21556 0.97240 0.93659 1.02296 1.21541 1.01016 0.96971 0.96161 1.21545 0.98045 0.96868 0.98125 1.21398 0.94142 0.98797 0.98586 0.88801 1.20711 0.83559 0.82982 0.83058 1.43913 1.36491 1.13901 1.48387 1.90835 1.67540 1.33928 1.46086 1.21117 1.00242 0.93366 0.96810 0.92683 0.92781 0.92739 0.90496 0.91699 0.93398 0.95127 0.92907 0.92414 0.90415 0.91689 0.91436 0.90807 0.91919 0.77703 0.77134 0.91381 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.22 37.16 0.38 -2.42 16 2 C 0.12 2.35 6.07 -4.04 -0.02 2.33 16 3 N -0.59 -13.56 2.46 -175.06 -0.43 -13.99 16 4 C 0.23 5.81 4.72 -5.20 -0.02 5.79 16 5 C -0.52 -14.60 9.04 -34.44 -0.31 -14.91 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 8 N -0.90 -25.58 13.28 55.43 0.74 -24.84 16 9 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.52 11.78 6.82 -10.99 -0.07 11.70 16 14 O -0.58 -13.82 15.72 5.56 0.09 -13.73 16 15 C -0.12 -2.36 1.39 -91.78 -0.13 -2.49 16 16 H 0.14 3.25 4.49 -51.92 -0.23 3.01 16 17 C -0.11 -1.89 4.89 -26.73 -0.13 -2.02 16 18 C -0.12 -1.69 5.70 -26.73 -0.15 -1.84 16 19 C -0.11 -1.20 5.35 -26.73 -0.14 -1.34 16 20 C -0.11 -1.40 3.01 -91.77 -0.28 -1.68 16 21 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 22 C 0.51 7.81 5.91 -10.99 -0.06 7.74 16 23 N -0.86 -9.18 8.77 31.22 0.27 -8.90 16 24 O -0.51 -10.76 14.49 5.56 0.08 -10.68 16 25 C -0.08 -1.31 3.83 -26.74 -0.10 -1.41 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.53 8.04 -51.93 -0.42 1.12 16 30 H 0.06 1.32 7.62 -51.93 -0.40 0.92 16 31 H 0.05 1.23 4.38 -51.93 -0.23 1.00 16 32 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.49 5.96 -51.93 -0.31 1.18 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.10 7.22 -51.93 -0.37 0.73 16 38 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.06 0.52 7.57 -51.93 -0.39 0.13 16 40 H 0.40 2.73 8.25 -40.82 -0.34 2.39 16 41 H 0.40 4.15 8.93 -40.82 -0.36 3.79 16 42 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 43 H 0.07 1.19 7.91 -51.93 -0.41 0.78 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -33.56 337.69 -7.14 -40.70 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.81 Total: 8.03 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.15 Total: 1.20 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.58 Total: -47.74 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: 0.17 Total: -24.41 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.56 -7.14 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344841791.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.331 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds