Wall clock time and date at job start Tue Mar 31 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46826 * 2 1 4 4 C 1.46498 * 120.00186 * 264.92149 * 3 2 1 5 5 C 1.50702 * 109.46941 * 275.63864 * 4 3 2 6 6 H 1.08000 * 119.99838 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99817 * 180.02562 * 5 4 3 8 8 N 1.31507 * 120.00266 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 119.99798 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47167 * 89.99427 * 9 7 5 11 11 H 1.48494 * 109.46917 * 209.99815 * 9 7 5 12 12 H 1.48501 * 109.46800 * 329.99924 * 9 7 5 13 13 C 1.34778 * 119.99833 * 84.91831 * 3 2 1 14 14 O 1.21282 * 119.99961 * 5.00870 * 13 3 2 15 15 C 1.50700 * 120.00182 * 185.01295 * 13 3 2 16 16 H 1.09005 * 109.46621 * 306.50300 * 15 13 3 17 17 C 1.52999 * 109.46912 * 66.49569 * 15 13 3 18 18 C 1.53004 * 109.46756 * 180.02562 * 17 15 13 19 19 C 1.52999 * 109.47347 * 300.00387 * 18 17 15 20 20 C 1.52992 * 109.47170 * 59.99743 * 19 18 17 21 21 H 1.09005 * 109.47264 * 60.00000 * 20 19 18 22 22 C 1.50705 * 109.47300 * 180.02562 * 20 19 18 23 23 N 1.34782 * 119.99646 * 299.99982 * 22 20 19 24 24 O 1.21280 * 120.00137 * 120.00208 * 22 20 19 25 25 C 1.52996 * 109.47590 * 300.00206 * 20 19 18 26 26 H 1.09000 * 109.46786 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47226 * 299.99405 * 1 2 3 28 28 H 1.08993 * 109.47701 * 59.99955 * 1 2 3 29 29 H 1.09002 * 109.47226 * 240.00595 * 2 1 3 30 30 H 1.08993 * 109.47701 * 120.00045 * 2 1 3 31 31 H 1.09000 * 109.47120 * 35.63313 * 4 3 2 32 32 H 1.08998 * 109.47468 * 155.63946 * 4 3 2 33 33 H 0.97006 * 120.00198 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.47366 * 60.00677 * 17 15 13 35 35 H 1.08995 * 109.47478 * 300.00331 * 17 15 13 36 36 H 1.09008 * 109.46657 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.47036 * 60.00671 * 18 17 15 38 38 H 1.09002 * 109.46987 * 180.02562 * 19 18 17 39 39 H 1.09010 * 109.46748 * 299.99994 * 19 18 17 40 40 H 0.96998 * 120.00051 * 0.02562 * 23 22 20 41 41 H 0.96998 * 119.99387 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.47351 * 300.00276 * 25 20 19 43 43 H 1.09001 * 109.47668 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3683 2.0345 -1.2637 5 6 3.7818 1.6730 -1.6414 6 1 4.3614 1.0222 -1.0036 7 6 4.3352 2.1741 -2.8005 8 7 3.6295 2.9670 -3.5769 9 14 6.0875 1.7266 -3.2683 10 1 6.0792 0.4954 -4.0987 11 1 6.6934 2.8406 -4.0408 12 1 6.8828 1.4878 -2.0371 13 6 2.1454 2.0511 1.1626 14 8 1.9430 1.4831 2.2150 15 6 2.5389 3.5058 1.1551 16 1 3.4561 3.6310 0.5795 17 6 1.4204 4.3333 0.5187 18 6 1.8203 5.8102 0.5105 19 6 2.0513 6.2840 1.9468 20 6 3.1697 5.4564 2.5831 21 1 4.0868 5.5813 2.0074 22 6 3.3970 5.9227 3.9981 23 7 3.7597 7.1986 4.2371 24 8 3.2534 5.1499 4.9217 25 6 2.7700 3.9796 2.5914 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6866 1.7010 -2.0461 32 1 2.2882 3.1154 -1.1484 33 1 4.0187 3.3192 -4.3926 34 1 0.5032 4.2081 1.0942 35 1 1.2561 3.9961 -0.5046 36 1 1.0232 6.3998 0.0575 37 1 2.7372 5.9351 -0.0653 38 1 2.3357 7.3363 1.9409 39 1 1.1342 6.1590 2.5226 40 1 3.8741 7.8168 3.4984 41 1 3.9056 7.4988 5.1478 42 1 1.8529 3.8546 3.1671 43 1 3.5670 3.3899 3.0444 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344841793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:23 Heat of formation + Delta-G solvation = -103.291712 kcal Electronic energy + Delta-G solvation = -23510.177687 eV Core-core repulsion = 20168.031412 eV Total energy + Delta-G solvation = -3342.146274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.24023 -39.10696 -36.86041 -35.15855 -33.73946 -32.77763 -31.45344 -30.59393 -29.69424 -26.99616 -23.98735 -23.78927 -22.94432 -21.73723 -20.63479 -19.52467 -18.24389 -17.40899 -16.65283 -16.44696 -16.05062 -15.42083 -15.07334 -14.55514 -14.45310 -14.42665 -13.87397 -13.45332 -13.39977 -12.92230 -12.63772 -12.34784 -12.19621 -12.03677 -11.79639 -11.48813 -11.41841 -11.12529 -10.96801 -10.92710 -10.75830 -10.49945 -10.41450 -10.27462 -10.08049 -10.05087 -9.72883 -9.70755 -9.52384 -8.84670 -8.51351 -7.64177 -6.19102 -4.25538 2.69050 3.21327 3.28681 3.32387 3.48018 3.51776 4.02062 4.33389 4.73069 4.85738 4.87857 5.13552 5.28376 5.38457 5.43454 5.52156 5.59043 5.65349 5.73578 5.78002 5.88231 5.93233 6.03121 6.13797 6.21370 6.28216 6.32314 6.40297 6.44967 6.52226 6.63612 6.69268 6.72064 6.80819 6.89111 7.24161 7.28863 7.61383 7.76642 8.07290 8.28140 8.43293 8.80514 9.10910 9.42284 10.87177 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.005811 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.790328 B = 4817.244504 C = 5805.687148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.595 5.595 4 C 0.225 3.775 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.520 3.480 14 O -0.572 6.572 15 C -0.103 4.103 16 H 0.106 0.894 17 C -0.118 4.118 18 C -0.114 4.114 19 C -0.108 4.108 20 C -0.109 4.109 21 H 0.100 0.900 22 C 0.522 3.478 23 N -0.860 5.860 24 O -0.539 6.539 25 C -0.075 4.075 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.057 0.943 33 H 0.264 0.736 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.400 0.600 41 H 0.397 0.603 42 H 0.073 0.927 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 9.047 6.413 11.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.326 5.326 4 C 0.105 3.895 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.308 3.692 14 O -0.453 6.453 15 C -0.124 4.124 16 H 0.124 0.876 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.146 4.146 20 C -0.131 4.131 21 H 0.118 0.882 22 C 0.307 3.693 23 N -0.424 5.424 24 O -0.415 6.415 25 C -0.113 4.113 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.229 0.771 41 H 0.227 0.773 42 H 0.092 0.908 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.125 8.192 7.218 11.357 hybrid contribution 1.241 0.254 -0.568 1.388 sum -1.884 8.446 6.650 10.913 Atomic orbital electron populations 1.22104 0.97046 1.01141 1.01788 1.21196 0.93179 0.84137 1.02324 1.48219 1.62872 1.13122 1.08347 1.19725 0.95717 0.94493 0.79544 1.21535 0.98492 1.30337 1.07142 0.92196 1.24911 0.98004 0.94810 0.95995 1.69913 1.36980 1.32505 1.13648 0.86554 0.84470 0.78166 0.78660 1.20542 1.21073 1.19800 1.20405 0.76677 0.88749 0.83342 1.90596 1.53013 1.70294 1.31416 1.21224 1.01365 0.92197 0.97582 0.87630 1.21734 0.97128 0.94305 1.02377 1.21497 1.02292 0.96036 0.95314 1.21545 0.97824 0.98037 0.97153 1.21402 1.01152 0.98134 0.92365 0.88150 1.20816 0.74987 0.81626 0.91896 1.43931 1.73646 1.12552 1.12264 1.90753 1.50493 1.53932 1.46311 1.21096 1.03221 0.91658 0.95334 0.92542 0.92865 0.92713 0.90438 0.91466 0.95069 0.92574 0.92586 0.92232 0.89279 0.91482 0.90972 0.91860 0.91535 0.77139 0.77282 0.90818 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 10.20 37.16 0.38 -2.28 16 2 C 0.12 2.20 6.14 -4.04 -0.02 2.18 16 3 N -0.60 -12.61 2.47 -175.06 -0.43 -13.04 16 4 C 0.22 5.18 4.58 -5.19 -0.02 5.15 16 5 C -0.54 -13.75 9.38 -34.44 -0.32 -14.08 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -23.76 13.29 55.43 0.74 -23.03 16 9 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 C 0.52 11.03 6.94 -10.98 -0.08 10.95 16 14 O -0.57 -13.47 15.62 5.56 0.09 -13.39 16 15 C -0.10 -1.84 1.68 -91.77 -0.15 -1.99 16 16 H 0.11 2.01 7.68 -51.93 -0.40 1.61 16 17 C -0.12 -1.84 4.81 -26.73 -0.13 -1.97 16 18 C -0.11 -1.41 5.92 -26.73 -0.16 -1.57 16 19 C -0.11 -1.17 5.10 -26.74 -0.14 -1.31 16 20 C -0.11 -1.41 2.53 -91.78 -0.23 -1.64 16 21 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 22 C 0.52 6.96 7.43 -10.98 -0.08 6.88 16 23 N -0.86 -7.33 8.77 31.22 0.27 -7.06 16 24 O -0.54 -9.75 16.82 5.56 0.09 -9.66 16 25 C -0.07 -1.26 3.09 -26.73 -0.08 -1.35 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.46 8.03 -51.93 -0.42 1.05 16 30 H 0.07 1.32 7.51 -51.93 -0.39 0.92 16 31 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 32 H 0.06 1.27 3.99 -51.93 -0.21 1.07 16 33 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.54 5.37 -51.93 -0.28 1.26 16 36 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.51 7.57 -51.93 -0.39 0.12 16 39 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.40 2.23 8.25 -40.82 -0.34 1.89 16 41 H 0.40 2.94 8.93 -40.82 -0.36 2.57 16 42 H 0.07 1.36 7.99 -51.93 -0.41 0.94 16 43 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -31.72 343.86 -7.19 -38.91 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.97 Total: 6.26 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.14 Total: 0.58 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.58 Total: -43.13 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.18 Total: -23.04 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.72 -7.19 -38.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344841793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.380 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds