Wall clock time and date at job start Tue Mar 31 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47288 * 2 1 4 4 C 1.46503 * 119.99683 * 267.44950 * 3 2 1 5 5 C 1.50706 * 109.46909 * 264.49408 * 4 3 2 6 6 H 1.07996 * 119.99576 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00089 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99540 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00027 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46960 * 90.00105 * 9 7 5 11 11 H 1.48499 * 109.47183 * 210.00434 * 9 7 5 12 12 H 1.48505 * 109.46872 * 330.00186 * 9 7 5 13 13 C 1.34771 * 119.99897 * 87.44322 * 3 2 1 14 14 O 1.21275 * 120.00324 * 6.38536 * 13 3 2 15 15 C 1.50704 * 119.99591 * 186.11136 * 13 3 2 16 16 H 1.08991 * 109.47500 * 310.13889 * 15 13 3 17 17 C 1.53004 * 109.47351 * 70.14475 * 15 13 3 18 18 C 1.53004 * 109.46946 * 59.99528 * 17 15 13 19 19 C 1.52999 * 109.47206 * 60.00541 * 18 17 15 20 20 C 1.53004 * 109.46727 * 299.99594 * 19 18 17 21 21 H 1.08995 * 109.47283 * 299.99732 * 20 19 18 22 22 C 1.50701 * 109.46792 * 180.02562 * 20 19 18 23 23 N 1.34774 * 119.99945 * 60.00040 * 22 20 19 24 24 O 1.21283 * 119.99988 * 240.00195 * 22 20 19 25 25 C 1.52999 * 109.47256 * 60.00300 * 20 19 18 26 26 H 1.09004 * 109.46922 * 299.99777 * 1 2 3 27 27 H 1.08994 * 109.47739 * 59.99492 * 1 2 3 28 28 H 1.09001 * 109.47477 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46922 * 240.00223 * 2 1 3 30 30 H 1.08991 * 109.47240 * 120.00405 * 2 1 3 31 31 H 1.08999 * 109.47593 * 24.49699 * 4 3 2 32 32 H 1.08999 * 109.46871 * 144.49980 * 4 3 2 33 33 H 0.97007 * 119.99381 * 179.97438 * 8 7 5 34 34 H 1.08991 * 109.47036 * 179.97438 * 17 15 13 35 35 H 1.09003 * 109.46626 * 300.00038 * 17 15 13 36 36 H 1.09005 * 109.46708 * 180.02562 * 18 17 15 37 37 H 1.09004 * 109.47374 * 300.00161 * 18 17 15 38 38 H 1.08995 * 109.47020 * 59.99486 * 19 18 17 39 39 H 1.08996 * 109.47114 * 180.02562 * 19 18 17 40 40 H 0.96992 * 120.00302 * 0.02562 * 23 22 20 41 41 H 0.96998 * 119.99825 * 179.97438 * 23 22 20 42 42 H 1.08999 * 109.47433 * 179.97438 * 25 20 19 43 43 H 1.09003 * 109.46818 * 59.99428 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3158 2.0529 -1.2675 5 6 3.7863 1.9246 -1.5711 6 1 4.4344 1.3952 -0.8883 7 6 4.3043 2.4829 -2.7204 8 7 3.5152 3.1280 -3.5515 9 14 6.1270 2.3232 -3.0970 10 1 6.3627 1.0884 -3.8875 11 1 6.5766 3.5040 -3.8772 12 1 6.8906 2.2502 -1.8254 13 6 2.1939 2.0339 1.1660 14 8 2.0596 1.4442 2.2172 15 6 2.5631 3.4950 1.1634 16 1 3.4078 3.6551 0.4935 17 6 1.3683 4.3221 0.6846 18 6 0.1827 4.0973 1.6251 19 6 0.5666 4.5288 3.0419 20 6 1.7613 3.7016 3.5208 21 1 1.4943 2.6449 3.5226 22 6 2.1391 4.1262 4.9165 23 7 1.2450 4.0175 5.9191 24 8 3.2477 4.5657 5.1376 25 6 2.9470 3.9264 2.5803 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.7378 1.5910 -2.0680 32 1 2.0514 3.1076 -1.1905 33 1 3.8797 3.5211 -4.3599 34 1 1.6353 5.3789 0.6832 35 1 1.0948 4.0147 -0.3248 36 1 -0.6687 4.6863 1.2837 37 1 -0.0844 3.0405 1.6270 38 1 0.8336 5.5855 3.0401 39 1 -0.2780 4.3682 3.7120 40 1 0.3586 3.6656 5.7425 41 1 1.4883 4.2904 6.8176 42 1 3.7983 3.3375 2.9217 43 1 3.2140 4.9832 2.5785 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344841794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:25 Heat of formation + Delta-G solvation = -99.292973 kcal Electronic energy + Delta-G solvation = -23930.824549 eV Core-core repulsion = 20588.851673 eV Total energy + Delta-G solvation = -3341.972876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.43914 -38.99236 -36.58396 -35.17700 -33.61024 -32.80471 -31.39402 -30.49353 -29.72203 -27.00362 -23.95019 -23.66910 -22.96713 -21.90964 -20.55021 -19.74040 -17.91455 -17.42117 -16.59537 -16.41284 -15.90744 -15.41586 -15.06552 -14.56522 -14.47944 -14.30115 -13.72757 -13.57023 -13.13833 -12.89950 -12.61695 -12.29892 -12.16750 -12.04307 -11.71424 -11.59597 -11.49697 -11.28442 -10.97760 -10.84139 -10.72060 -10.63586 -10.47686 -10.19839 -10.05398 -9.78666 -9.71817 -9.60192 -9.45042 -8.70755 -8.49478 -7.68921 -6.19218 -4.26121 2.86429 3.23318 3.30787 3.34149 3.44530 3.69730 3.97220 4.34429 4.88249 4.96016 5.01240 5.14794 5.35438 5.46664 5.53125 5.55766 5.64519 5.73717 5.77626 5.83462 5.85582 5.88690 6.08191 6.15199 6.23864 6.31275 6.38237 6.45811 6.48102 6.56335 6.64912 6.68467 6.73744 6.83065 6.88300 7.24592 7.43123 7.57509 7.77208 8.06572 8.36832 8.42723 8.79942 9.06259 9.42060 10.87184 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.005605 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.318358 B = 4994.377585 C = 5634.404669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.112 3.888 3 N -0.594 5.594 4 C 0.229 3.771 5 C -0.539 4.539 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.529 3.471 14 O -0.575 6.575 15 C -0.108 4.108 16 H 0.114 0.886 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.104 4.104 20 C -0.127 4.127 21 H 0.140 0.860 22 C 0.524 3.476 23 N -0.861 5.861 24 O -0.550 6.550 25 C -0.073 4.073 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.265 0.735 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.399 0.601 41 H 0.395 0.605 42 H 0.069 0.931 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.402 1.179 10.134 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.011 4.011 3 N -0.324 5.324 4 C 0.110 3.890 5 C -0.577 4.577 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.319 3.681 14 O -0.458 6.458 15 C -0.129 4.129 16 H 0.132 0.868 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.142 4.142 20 C -0.147 4.147 21 H 0.157 0.843 22 C 0.310 3.690 23 N -0.424 5.424 24 O -0.427 6.427 25 C -0.112 4.112 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.228 0.772 41 H 0.224 0.776 42 H 0.088 0.912 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.709 1.230 10.391 13.613 hybrid contribution 0.707 -0.149 -0.191 0.748 sum -8.001 1.081 10.200 13.008 Atomic orbital electron populations 1.22112 0.96980 1.01148 1.01789 1.21230 0.93217 0.84266 1.02401 1.48244 1.62951 1.13076 1.08109 1.19638 0.96231 0.93794 0.79363 1.21525 0.93609 1.35844 1.06750 0.92172 1.24918 0.98203 0.94761 0.95798 1.69917 1.35319 1.35554 1.12139 0.86539 0.84957 0.77717 0.78583 1.20558 1.21025 1.19698 1.20387 0.75633 0.89003 0.83118 1.90396 1.54767 1.69300 1.31330 1.21322 1.00871 0.92209 0.98473 0.86813 1.21645 0.93749 0.99857 0.99896 1.21554 0.98027 1.01661 0.94331 1.21478 0.96189 0.99419 0.97082 1.21852 0.97582 1.05098 0.90216 0.84298 1.21015 0.84181 0.76056 0.87738 1.43927 1.17513 1.69257 1.11740 1.90699 1.21719 1.45512 1.84768 1.21084 0.96632 1.01400 0.92041 0.92950 0.92632 0.92532 0.90701 0.91188 0.94788 0.93318 0.92533 0.91243 0.89836 0.91832 0.91790 0.91944 0.92289 0.77246 0.77562 0.91232 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 10.23 37.16 0.38 -2.03 16 2 C 0.11 2.00 6.13 -4.04 -0.02 1.97 16 3 N -0.59 -11.97 2.47 -175.06 -0.43 -12.41 16 4 C 0.23 5.22 4.72 -5.19 -0.02 5.20 16 5 C -0.54 -13.79 8.76 -34.44 -0.30 -14.09 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.03 13.29 55.43 0.74 -23.29 16 9 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.53 10.45 5.47 -10.99 -0.06 10.39 16 14 O -0.58 -11.88 12.94 5.56 0.07 -11.80 16 15 C -0.11 -1.95 2.18 -91.76 -0.20 -2.15 16 16 H 0.11 2.31 7.10 -51.93 -0.37 1.94 16 17 C -0.11 -1.78 5.15 -26.73 -0.14 -1.92 16 18 C -0.12 -1.58 5.70 -26.73 -0.15 -1.73 16 19 C -0.10 -1.27 5.10 -26.73 -0.14 -1.41 16 20 C -0.13 -1.90 2.24 -91.77 -0.21 -2.10 16 21 H 0.14 2.30 5.17 -51.93 -0.27 2.04 16 22 C 0.52 7.82 7.43 -10.99 -0.08 7.74 16 23 N -0.86 -8.74 8.77 31.22 0.27 -8.47 16 24 O -0.55 -10.41 16.82 5.55 0.09 -10.32 16 25 C -0.07 -1.26 3.74 -26.73 -0.10 -1.36 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.33 8.05 -51.93 -0.42 0.91 16 30 H 0.07 1.27 7.42 -51.93 -0.39 0.88 16 31 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 32 H 0.05 1.12 4.42 -51.93 -0.23 0.89 16 33 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.43 5.61 -51.93 -0.29 1.13 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.94 7.22 -51.93 -0.37 0.56 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.58 7.56 -51.93 -0.39 0.18 16 40 H 0.40 2.98 8.25 -40.82 -0.34 2.64 16 41 H 0.39 3.43 8.93 -40.82 -0.36 3.07 16 42 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 43 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 LS Contribution 336.38 15.07 5.07 5.07 Total: -1.00 -30.17 336.38 -7.12 -37.29 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.77 Total: 8.28 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.14 Total: 0.14 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.58 Total: -44.17 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.17 Total: -22.13 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.17 -7.12 -37.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344841794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.001 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds