Wall clock time and date at job start Tue Mar 31 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47340 * 2 1 4 4 C 1.46504 * 119.99716 * 265.00768 * 3 2 1 5 5 C 1.50694 * 109.47382 * 264.39215 * 4 3 2 6 6 H 1.08003 * 120.00093 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00185 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00436 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99571 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46770 * 90.00619 * 9 7 5 11 11 H 1.48504 * 109.46873 * 210.00181 * 9 7 5 12 12 H 1.48499 * 109.47307 * 330.00378 * 9 7 5 13 13 C 1.34775 * 120.00328 * 85.01316 * 3 2 1 14 14 O 1.21284 * 119.99730 * 4.09161 * 13 3 2 15 15 C 1.50698 * 120.00346 * 184.08652 * 13 3 2 16 16 H 1.09001 * 109.46699 * 26.86533 * 15 13 3 17 17 C 1.52996 * 109.47326 * 266.86652 * 15 13 3 18 18 C 1.53001 * 109.47133 * 180.02562 * 17 15 13 19 19 C 1.52995 * 109.47198 * 59.99480 * 18 17 15 20 20 C 1.52996 * 109.47503 * 300.00293 * 19 18 17 21 21 H 1.09001 * 109.47134 * 300.00118 * 20 19 18 22 22 C 1.50696 * 109.47529 * 179.97438 * 20 19 18 23 23 N 1.34777 * 119.99897 * 59.99778 * 22 20 19 24 24 O 1.21280 * 120.00392 * 240.00113 * 22 20 19 25 25 C 1.52995 * 109.47048 * 146.86106 * 15 13 3 26 26 H 1.09007 * 109.46863 * 304.63277 * 1 2 3 27 27 H 1.09000 * 109.46904 * 64.62852 * 1 2 3 28 28 H 1.08998 * 109.47553 * 184.63473 * 1 2 3 29 29 H 1.09003 * 109.47060 * 239.99779 * 2 1 3 30 30 H 1.09001 * 109.46905 * 120.00337 * 2 1 3 31 31 H 1.09000 * 109.47188 * 24.39651 * 4 3 2 32 32 H 1.09002 * 109.46302 * 144.38865 * 4 3 2 33 33 H 0.96998 * 120.00346 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.46683 * 299.99822 * 17 15 13 35 35 H 1.09002 * 109.47558 * 59.99424 * 17 15 13 36 36 H 1.09001 * 109.46742 * 299.99789 * 18 17 15 37 37 H 1.08998 * 109.47215 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.47312 * 180.02562 * 19 18 17 39 39 H 1.09001 * 109.47021 * 60.00481 * 19 18 17 40 40 H 0.97003 * 120.00226 * 0.02562 * 23 22 20 41 41 H 0.97000 * 120.00421 * 180.02562 * 23 22 20 42 42 H 1.09005 * 109.47528 * 300.00172 * 25 15 13 43 43 H 1.09001 * 109.47021 * 60.00625 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3666 2.0349 -1.2640 5 6 3.8485 1.9049 -1.5052 6 1 4.4688 1.3867 -0.7889 7 6 4.4124 2.4475 -2.6404 8 7 5.7055 2.3336 -2.8513 9 14 3.3393 3.3431 -3.8797 10 1 3.2712 4.7837 -3.5257 11 1 3.9216 3.1941 -5.2377 12 1 1.9722 2.7636 -3.8610 13 6 2.1474 2.0504 1.1627 14 8 1.9304 1.4864 2.2143 15 6 2.5613 3.4994 1.1563 16 1 2.2592 3.9593 0.2154 17 6 4.0808 3.5965 1.3066 18 6 4.5009 5.0676 1.3007 19 6 3.8257 5.7955 2.4648 20 6 2.3062 5.6985 2.3144 21 1 2.0040 6.1588 1.3737 22 6 1.6411 6.4149 3.4613 23 7 1.8658 7.7295 3.6558 24 8 0.9038 5.8086 4.2093 25 6 1.8861 4.2278 2.3200 26 1 -0.3633 0.5841 0.8456 27 1 -0.3633 0.4403 -0.9286 28 1 -0.3634 -1.0243 0.0830 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8225 1.5603 -2.0805 32 1 2.0979 3.0901 -1.2133 33 1 6.1021 2.7150 -3.6501 34 1 4.3829 3.1365 2.2476 35 1 4.5619 3.0774 0.4776 36 1 4.1987 5.5280 0.3600 37 1 5.5835 5.1368 1.4074 38 1 4.1246 6.8437 2.4603 39 1 4.1279 5.3352 3.4054 40 1 2.4552 8.2146 3.0574 41 1 1.4380 8.1906 4.3942 42 1 0.8035 4.1587 2.2129 43 1 2.1882 3.7679 3.2609 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344841795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:27 Heat of formation + Delta-G solvation = -102.076497 kcal Electronic energy + Delta-G solvation = -23655.968457 eV Core-core repulsion = 20313.874878 eV Total energy + Delta-G solvation = -3342.093579 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23299 -39.15374 -36.85969 -35.22101 -33.75815 -32.77131 -31.40404 -30.58446 -29.89466 -27.55583 -24.02599 -23.67238 -22.63231 -21.81433 -20.57345 -19.50728 -18.20355 -17.41712 -17.02810 -16.54729 -16.23777 -15.42161 -15.09636 -14.67276 -14.42306 -13.99894 -13.72075 -13.57588 -13.36986 -13.07070 -12.72984 -12.56768 -12.25178 -12.10482 -11.90786 -11.67936 -11.58482 -11.11267 -11.01711 -10.88051 -10.69307 -10.46867 -10.40515 -10.28628 -10.20586 -9.97219 -9.74519 -9.68150 -9.47929 -8.85834 -8.70827 -7.71338 -6.24137 -4.24399 2.66204 3.13421 3.22837 3.24392 3.39228 3.50977 3.91351 4.23719 4.74151 4.86766 4.91512 5.06321 5.29346 5.43979 5.48302 5.52955 5.64386 5.68742 5.72528 5.79619 5.81155 5.84977 5.97358 6.18453 6.21434 6.28569 6.31832 6.40450 6.48968 6.54237 6.56947 6.60156 6.69386 6.72006 6.85931 7.06756 7.26445 7.40691 7.42835 8.17339 8.25342 8.41376 8.80708 9.01943 9.35703 10.87974 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014505 B = 0.006388 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.942102 B = 4382.214562 C = 5508.019264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.593 5.593 4 C 0.207 3.793 5 C -0.535 4.535 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.889 5.889 9 Si 0.867 3.133 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.526 3.474 14 O -0.568 6.568 15 C -0.098 4.098 16 H 0.092 0.908 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.109 4.109 20 C -0.107 4.107 21 H 0.098 0.902 22 C 0.522 3.478 23 N -0.860 5.860 24 O -0.541 6.541 25 C -0.081 4.081 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.029 0.971 33 H 0.266 0.734 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.401 0.599 41 H 0.397 0.603 42 H 0.064 0.936 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 9.308 5.441 11.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.323 5.323 4 C 0.085 3.915 5 C -0.574 4.574 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.694 3.306 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.314 3.686 14 O -0.448 6.448 15 C -0.119 4.119 16 H 0.110 0.890 17 C -0.153 4.153 18 C -0.148 4.148 19 C -0.147 4.147 20 C -0.128 4.128 21 H 0.116 0.884 22 C 0.307 3.693 23 N -0.423 5.423 24 O -0.417 6.417 25 C -0.120 4.120 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.229 0.771 41 H 0.227 0.773 42 H 0.083 0.917 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.560 8.474 6.200 11.881 hybrid contribution -0.293 1.047 -0.985 1.467 sum -5.853 9.521 5.215 12.333 Atomic orbital electron populations 1.22130 0.96952 1.01384 1.01760 1.21245 0.93187 0.83777 1.02659 1.47966 1.63377 1.13246 1.07726 1.19847 0.97194 0.92989 0.81421 1.21359 0.90969 1.37335 1.07697 0.90141 1.24841 0.94744 0.95551 0.97387 1.69884 1.10396 1.44874 1.27517 0.86985 0.81355 0.80758 0.81496 1.19852 1.20979 1.18961 1.20395 0.76223 0.88819 0.83134 1.90595 1.52655 1.70257 1.31312 1.21219 0.97927 0.92833 0.99922 0.88983 1.21615 0.93016 0.96611 1.04061 1.21459 0.99967 0.95864 0.97546 1.21575 0.92221 1.00428 1.00451 1.21361 0.96812 0.97665 0.96997 0.88396 1.20823 0.80536 0.81954 0.85989 1.43927 1.52406 1.10886 1.35113 1.90746 1.37386 1.66350 1.47172 1.21185 1.00085 0.91346 0.99346 0.92644 0.92923 0.92326 0.90422 0.91041 0.94899 0.95313 0.92396 0.92453 0.87491 0.91456 0.91402 0.91993 0.91448 0.77104 0.77269 0.91676 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 10.20 37.16 0.38 -2.18 16 2 C 0.11 2.10 6.09 -4.04 -0.02 2.07 16 3 N -0.59 -12.17 2.48 -175.06 -0.43 -12.61 16 4 C 0.21 4.44 4.00 -5.19 -0.02 4.42 16 5 C -0.54 -13.34 8.06 -34.44 -0.28 -13.62 16 6 H 0.08 2.26 7.62 -52.48 -0.40 1.86 16 7 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.89 -24.64 13.96 55.43 0.77 -23.86 16 9 Si 0.87 19.01 27.47 -169.99 -4.67 14.34 16 10 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 13 C 0.53 10.98 6.61 -10.99 -0.07 10.91 16 14 O -0.57 -13.18 15.87 5.55 0.09 -13.09 16 15 C -0.10 -1.76 1.96 -91.78 -0.18 -1.94 16 16 H 0.09 1.62 5.86 -51.93 -0.30 1.32 16 17 C -0.12 -2.04 5.18 -26.73 -0.14 -2.18 16 18 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 19 C -0.11 -1.27 5.10 -26.74 -0.14 -1.41 16 20 C -0.11 -1.37 2.53 -91.80 -0.23 -1.61 16 21 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 22 C 0.52 6.86 7.43 -10.99 -0.08 6.78 16 23 N -0.86 -7.22 8.77 31.22 0.27 -6.95 16 24 O -0.54 -9.59 16.82 5.56 0.09 -9.49 16 25 C -0.08 -1.35 3.40 -26.76 -0.09 -1.44 16 26 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 30 H 0.07 1.35 7.52 -51.93 -0.39 0.96 16 31 H 0.03 0.70 7.09 -51.93 -0.37 0.33 16 32 H 0.03 0.60 5.35 -51.93 -0.28 0.32 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.11 2.26 5.66 -51.93 -0.29 1.96 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.54 7.56 -51.93 -0.39 0.15 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.40 2.22 8.25 -40.82 -0.34 1.88 16 41 H 0.40 2.88 8.93 -40.82 -0.36 2.51 16 42 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 43 H 0.08 1.49 7.81 -51.93 -0.41 1.08 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -31.68 339.30 -6.81 -38.49 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.92 Total: 8.05 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -1.13 Total: 0.01 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.61 Total: -43.42 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.18 Total: -22.58 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.67 Total: 14.34 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.68 -6.81 -38.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344841795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.586 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds