Wall clock time and date at job start Tue Mar 31 2020 05:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.46758 * 2 1 4 4 C 1.50696 * 109.46922 * 239.99364 * 2 1 3 5 5 H 1.08000 * 120.00002 * 239.99696 * 4 2 1 6 6 C 1.37877 * 119.99774 * 60.00853 * 4 2 1 7 7 N 1.31506 * 120.00419 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99706 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47535 * 59.99580 * 8 6 4 10 10 H 1.48498 * 109.47278 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47188 * 299.99362 * 8 6 4 12 12 N 1.46504 * 109.46619 * 119.99801 * 2 1 3 13 13 C 1.46493 * 120.00334 * 59.99958 * 12 2 1 14 14 C 1.34775 * 119.99531 * 240.00135 * 12 2 1 15 15 O 1.21279 * 120.00300 * 359.97438 * 14 12 2 16 16 C 1.50703 * 119.99773 * 180.02562 * 14 12 2 17 17 H 1.09001 * 109.46980 * 59.99839 * 16 14 12 18 18 C 1.52997 * 109.47084 * 299.99639 * 16 14 12 19 19 C 1.53002 * 109.46978 * 179.97438 * 18 16 14 20 20 C 1.52996 * 109.46891 * 60.00410 * 19 18 16 21 21 C 1.53000 * 109.47328 * 299.99597 * 20 19 18 22 22 H 1.09002 * 109.47398 * 180.02562 * 21 20 19 23 23 C 1.50699 * 109.47083 * 300.00241 * 21 20 19 24 24 N 1.34773 * 120.00068 * 299.99925 * 23 21 20 25 25 O 1.21277 * 119.99833 * 119.99582 * 23 21 20 26 26 C 1.52997 * 109.47060 * 60.00126 * 21 20 19 27 27 H 1.08996 * 109.46539 * 60.00549 * 1 2 3 28 28 H 1.09003 * 109.46916 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47215 * 300.00250 * 1 2 3 30 30 H 0.97005 * 120.00611 * 180.02562 * 7 6 4 31 31 H 1.08992 * 109.47581 * 269.99882 * 13 12 2 32 32 H 1.09003 * 109.47161 * 30.00201 * 13 12 2 33 33 H 1.08998 * 109.47077 * 149.99442 * 13 12 2 34 34 H 1.09001 * 109.47375 * 299.99958 * 18 16 14 35 35 H 1.09002 * 109.47045 * 60.00033 * 18 16 14 36 36 H 1.09004 * 109.47006 * 180.02562 * 19 18 16 37 37 H 1.08992 * 109.47056 * 300.00064 * 19 18 16 38 38 H 1.09004 * 109.47368 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.47372 * 59.99964 * 20 19 18 40 40 H 0.96998 * 119.99906 * 359.97438 * 24 23 21 41 41 H 0.96997 * 120.00218 * 180.02562 * 24 23 21 42 42 H 1.08998 * 109.47533 * 59.99948 * 26 21 20 43 43 H 1.08996 * 109.47853 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9431 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8271 -0.4203 -5.2203 11 1 3.8076 -1.1193 -4.0076 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 3.0865 1.1254 1.8912 16 6 3.2958 -0.7460 3.3137 17 1 3.9016 -1.6022 3.0167 18 6 2.1061 -1.2273 4.1466 19 6 2.6165 -1.9492 5.3953 20 6 3.4667 -0.9879 6.2283 21 6 4.6564 -0.5066 5.3955 22 1 5.2624 0.1779 5.9891 23 6 5.4936 -1.6904 4.9845 24 7 6.0516 -2.4796 5.9236 25 8 5.6651 -1.9328 3.8086 26 6 4.1461 0.2153 4.1468 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.7084 1.1608 -3.4845 31 1 0.7376 -2.1443 1.9994 32 1 1.5295 -2.5969 0.4710 33 1 2.4628 -2.5818 1.9865 34 1 1.5004 -0.3711 4.4435 35 1 1.5006 -1.9124 3.5532 36 1 1.7689 -2.2925 5.9885 37 1 3.2219 -2.8053 5.0980 38 1 3.8300 -1.5020 7.1182 39 1 2.8612 -0.1317 6.5257 40 1 5.9147 -2.2855 6.8641 41 1 6.5908 -3.2414 5.6591 42 1 3.5406 1.0714 4.4439 43 1 4.9936 0.5578 3.5531 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345431210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:21 Heat of formation + Delta-G solvation = -88.682969 kcal Electronic energy + Delta-G solvation = -23729.892903 eV Core-core repulsion = 20388.380111 eV Total energy + Delta-G solvation = -3341.512792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70145 -38.91260 -36.68901 -35.19935 -33.94614 -32.84828 -31.08925 -30.73607 -28.91309 -26.07883 -25.13374 -23.94138 -23.41385 -21.58072 -20.61864 -19.43518 -18.23013 -17.30636 -16.56422 -16.38607 -15.97762 -15.75316 -14.99763 -14.78674 -14.45824 -14.07202 -13.95549 -13.56420 -13.19372 -12.64962 -12.39661 -12.35311 -12.16477 -12.08513 -11.69771 -11.51381 -11.38898 -11.01942 -10.96953 -10.84066 -10.75699 -10.66185 -10.38336 -10.16352 -10.07560 -9.99986 -9.81443 -9.55083 -9.08177 -8.62225 -8.32106 -7.42641 -5.98581 -4.05910 2.58227 3.34170 3.38554 3.40747 3.41508 3.61625 4.10565 4.46973 4.60764 4.63763 4.66873 4.94942 5.24863 5.29164 5.31308 5.34060 5.37803 5.51518 5.54762 5.76056 5.87022 5.94157 6.03190 6.06109 6.11292 6.17712 6.22878 6.47192 6.52814 6.60835 6.71744 6.84555 6.93049 7.16985 7.18719 7.56640 7.65520 7.82383 8.12601 8.19894 8.31159 8.69965 8.94132 9.25137 9.60565 11.06638 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.004552 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.143650 B = 6150.154516 C = 6500.544025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.593 5.593 13 C 0.084 3.916 14 C 0.511 3.489 15 O -0.558 6.558 16 C -0.117 4.117 17 H 0.117 0.883 18 C -0.124 4.124 19 C -0.119 4.119 20 C -0.110 4.110 21 C -0.110 4.110 22 H 0.098 0.902 23 C 0.520 3.480 24 N -0.860 5.860 25 O -0.528 6.528 26 C -0.077 4.077 27 H 0.092 0.908 28 H 0.028 0.972 29 H 0.010 0.990 30 H 0.263 0.737 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.398 0.602 41 H 0.398 0.602 42 H 0.075 0.925 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.400 -7.457 20.929 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.324 5.324 13 C -0.060 4.060 14 C 0.298 3.702 15 O -0.438 6.438 16 C -0.138 4.138 17 H 0.135 0.865 18 C -0.161 4.161 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.131 4.131 22 H 0.116 0.884 23 C 0.305 3.695 24 N -0.424 5.424 25 O -0.404 6.404 26 C -0.115 4.115 27 H 0.110 0.890 28 H 0.047 0.953 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.226 0.774 41 H 0.229 0.771 42 H 0.093 0.907 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.440 -6.718 19.828 21.401 hybrid contribution 0.495 -0.844 -0.480 1.090 sum 4.935 -7.562 19.348 21.351 Atomic orbital electron populations 1.22068 0.98347 0.99255 1.00636 1.18896 0.90742 0.94540 0.80156 0.92011 1.21319 1.31570 1.12932 0.90403 0.92340 1.24884 0.95002 0.95002 0.98894 1.69873 1.36503 1.22686 1.23703 0.86568 0.79292 0.79548 0.82045 1.20281 1.21217 1.20256 1.48157 1.49218 1.11424 1.23562 1.21695 0.98536 0.83733 1.01999 1.20410 0.78631 0.86915 0.84230 1.90610 1.58479 1.17405 1.77272 1.21532 0.97506 1.00794 0.93961 0.86545 1.21807 0.97348 1.00903 0.96086 1.21562 0.99455 0.98020 0.96631 1.21558 0.95897 1.00196 0.97101 1.21444 0.96663 0.95481 0.99555 0.88410 1.20746 0.79009 0.83936 0.85773 1.43941 1.55771 1.32795 1.09921 1.90736 1.59846 1.72085 1.17711 1.21104 1.00061 0.96923 0.93439 0.88958 0.95277 0.97133 0.92742 0.93879 0.90470 0.92574 0.91702 0.90115 0.91486 0.92091 0.91817 0.90455 0.77362 0.77130 0.90671 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.97 37.16 0.33 -3.27 16 2 C 0.26 6.92 2.64 -69.08 -0.18 6.73 16 3 H 0.06 1.92 6.90 -51.93 -0.36 1.57 16 4 C -0.52 -14.84 7.99 -34.44 -0.28 -15.12 16 5 H 0.06 1.64 7.33 -52.49 -0.38 1.26 16 6 C 0.06 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -25.99 11.32 55.43 0.63 -25.36 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.59 -13.54 2.75 -175.27 -0.48 -14.02 16 13 C 0.08 1.54 7.80 59.84 0.47 2.01 16 14 C 0.51 11.43 7.08 -10.98 -0.08 11.36 16 15 O -0.56 -14.64 15.31 5.56 0.09 -14.55 16 16 C -0.12 -1.96 1.43 -91.77 -0.13 -2.09 16 17 H 0.12 2.10 4.77 -51.93 -0.25 1.85 16 18 C -0.12 -1.64 4.84 -26.73 -0.13 -1.77 16 19 C -0.12 -1.16 5.70 -26.73 -0.15 -1.31 16 20 C -0.11 -0.88 5.35 -26.73 -0.14 -1.03 16 21 C -0.11 -1.13 3.01 -91.77 -0.28 -1.40 16 22 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 23 C 0.52 5.96 5.91 -10.99 -0.06 5.89 16 24 N -0.86 -5.91 8.77 31.22 0.27 -5.64 16 25 O -0.53 -8.73 14.49 5.56 0.08 -8.64 16 26 C -0.08 -1.15 3.66 -26.73 -0.10 -1.25 16 27 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 28 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.04 0.69 6.95 -51.93 -0.36 0.33 16 32 H 0.08 1.50 7.02 -51.93 -0.36 1.13 16 33 H 0.06 0.91 6.01 -51.93 -0.31 0.60 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.08 4.53 -51.93 -0.24 0.84 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.63 7.22 -51.93 -0.37 0.26 16 38 H 0.06 0.34 7.57 -51.93 -0.39 -0.05 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.40 1.46 8.25 -40.82 -0.34 1.12 16 41 H 0.40 2.48 8.93 -40.82 -0.36 2.11 16 42 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 43 H 0.07 1.31 8.06 -51.93 -0.42 0.89 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -35.23 327.56 -6.86 -42.09 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.53 Total: 3.88 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.82 Total: 0.48 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.42 Total: -45.02 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.17 Total: -23.20 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.23 -6.86 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345431210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.595 kcal (2) G-P(sol) polarization free energy of solvation -35.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds