Wall clock time and date at job start Tue Mar 31 2020 05:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47012 * 2 1 4 4 C 1.50689 * 109.47210 * 239.99650 * 2 1 3 5 5 H 1.07997 * 120.00383 * 240.00144 * 4 2 1 6 6 C 1.37880 * 119.99796 * 59.99925 * 4 2 1 7 7 N 1.31509 * 120.00168 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99935 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47206 * 89.99813 * 8 6 4 10 10 H 1.48499 * 109.47154 * 210.00257 * 8 6 4 11 11 H 1.48507 * 109.46945 * 330.00156 * 8 6 4 12 12 N 1.46504 * 109.47284 * 119.99422 * 2 1 3 13 13 C 1.46495 * 119.99523 * 56.21875 * 12 2 1 14 14 C 1.34774 * 119.99981 * 236.22274 * 12 2 1 15 15 O 1.21283 * 119.99344 * 184.17022 * 14 12 2 16 16 C 1.50693 * 120.00400 * 4.16739 * 14 12 2 17 17 H 1.08998 * 109.47393 * 319.91334 * 16 14 12 18 18 C 1.53003 * 109.46897 * 79.90804 * 16 14 12 19 19 C 1.53002 * 109.47068 * 180.02562 * 18 16 14 20 20 C 1.53004 * 109.46966 * 300.00252 * 19 18 16 21 21 C 1.52995 * 109.47433 * 60.00191 * 20 19 18 22 22 H 1.09000 * 109.47239 * 59.99273 * 21 20 19 23 23 C 1.50697 * 109.47611 * 180.02562 * 21 20 19 24 24 N 1.34783 * 119.99616 * 300.00032 * 23 21 20 25 25 O 1.21282 * 120.00630 * 119.99489 * 23 21 20 26 26 C 1.53001 * 109.47509 * 199.90923 * 16 14 12 27 27 H 1.08998 * 109.46979 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46747 * 300.00193 * 1 2 3 29 29 H 1.08990 * 109.47151 * 60.00030 * 1 2 3 30 30 H 0.97006 * 119.99641 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47769 * 264.75469 * 13 12 2 32 32 H 1.09000 * 109.47503 * 24.75773 * 13 12 2 33 33 H 1.09004 * 109.47254 * 144.75454 * 13 12 2 34 34 H 1.09000 * 109.47060 * 60.00743 * 18 16 14 35 35 H 1.08999 * 109.47597 * 299.99935 * 18 16 14 36 36 H 1.09005 * 109.47144 * 59.99801 * 19 18 16 37 37 H 1.08995 * 109.47474 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.47365 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.47039 * 299.99783 * 20 19 18 40 40 H 0.97002 * 119.99979 * 359.97438 * 24 23 21 41 41 H 0.97001 * 120.00157 * 180.02562 * 24 23 21 42 42 H 1.08995 * 109.46590 * 59.99867 * 26 16 14 43 43 H 1.09005 * 109.46788 * 300.00004 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6532 -1.5885 -1.1312 6 6 1.6992 -0.2394 -2.4826 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3449 -2.1618 -4.4122 10 1 2.4873 -0.1404 -5.1120 11 1 3.6310 -1.7567 -3.7118 12 7 2.0184 -0.6905 1.1963 13 6 1.5975 -2.0665 1.4708 14 6 2.8549 -0.0597 2.0441 15 8 3.3189 -0.6554 2.9933 16 6 3.2136 1.3855 1.8129 17 1 3.3606 1.5573 0.7467 18 6 2.0813 2.2797 2.3221 19 6 2.4452 3.7471 2.0867 20 6 3.7353 4.0796 2.8391 21 6 4.8675 3.1854 2.3299 22 1 5.0143 3.3568 1.2635 23 6 6.1381 3.5124 3.0713 24 7 6.6530 4.7565 3.0099 25 8 6.6973 2.6563 3.7234 26 6 4.5035 1.7177 2.5657 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.7096 1.1616 -3.4844 31 1 0.7429 -2.0571 2.1473 32 1 1.3163 -2.5537 0.5371 33 1 2.4201 -2.6130 1.9322 34 1 1.9342 2.1081 3.3884 35 1 1.1623 2.0432 1.7858 36 1 2.5920 3.9185 1.0203 37 1 1.6388 4.3842 2.4498 38 1 3.9948 5.1248 2.6711 39 1 3.5885 3.9082 3.9054 40 1 6.2059 5.4412 2.4882 41 1 7.4710 4.9670 3.4868 42 1 5.3101 1.0806 2.2029 43 1 4.3564 1.5459 3.6320 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345431211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:24 Heat of formation + Delta-G solvation = -101.630018 kcal Electronic energy + Delta-G solvation = -23591.815435 eV Core-core repulsion = 20249.741218 eV Total energy + Delta-G solvation = -3342.074218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25783 -39.10142 -36.87032 -35.51181 -33.74816 -32.64092 -31.04657 -30.66065 -29.13923 -26.44433 -25.30620 -23.87681 -22.75456 -21.32618 -20.70588 -19.60972 -18.18309 -17.40931 -16.71389 -16.36714 -16.14390 -15.26811 -15.01799 -14.57622 -14.49291 -14.31923 -13.82915 -13.49982 -13.33857 -12.67758 -12.64179 -12.42849 -12.21009 -11.71512 -11.68302 -11.31670 -11.23118 -11.11308 -10.96072 -10.89283 -10.75236 -10.55893 -10.42264 -10.30090 -10.15219 -10.05345 -9.74168 -9.65356 -9.31857 -8.83219 -8.53469 -7.58518 -6.19216 -4.27216 2.67082 3.20748 3.28257 3.31839 3.42827 3.51635 4.03395 4.32004 4.69536 4.81683 4.84044 5.11632 5.24677 5.33509 5.38920 5.48896 5.54106 5.62551 5.72981 5.89618 6.06036 6.11549 6.18142 6.24174 6.27844 6.37744 6.40546 6.49760 6.56743 6.62228 6.69226 6.73591 6.79237 6.92144 7.22948 7.27009 7.42486 7.67247 7.87322 8.12248 8.26320 8.48466 8.77255 9.08930 9.41425 10.84997 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017359 B = 0.005165 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.616081 B = 5419.328679 C = 5826.494686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.252 3.748 3 H 0.058 0.942 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.592 5.592 13 C 0.095 3.905 14 C 0.514 3.486 15 O -0.573 6.573 16 C -0.106 4.106 17 H 0.103 0.897 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.108 4.108 21 C -0.109 4.109 22 H 0.101 0.899 23 C 0.522 3.478 24 N -0.860 5.860 25 O -0.539 6.539 26 C -0.077 4.077 27 H 0.032 0.968 28 H 0.012 0.988 29 H 0.094 0.906 30 H 0.264 0.736 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.397 0.603 42 H 0.070 0.930 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.884 10.096 6.181 12.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.151 3.849 3 H 0.076 0.924 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.322 5.322 13 C -0.049 4.049 14 C 0.302 3.698 15 O -0.454 6.454 16 C -0.127 4.127 17 H 0.121 0.879 18 C -0.147 4.147 19 C -0.152 4.152 20 C -0.146 4.146 21 C -0.130 4.130 22 H 0.119 0.881 23 C 0.307 3.693 24 N -0.424 5.424 25 O -0.414 6.414 26 C -0.115 4.115 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.229 0.771 41 H 0.228 0.772 42 H 0.089 0.911 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.233 9.196 6.870 11.925 hybrid contribution 0.352 -0.020 -1.188 1.239 sum 3.585 9.176 5.682 11.373 Atomic orbital electron populations 1.22118 0.98023 0.99924 1.00745 1.19112 0.91464 0.93570 0.80771 0.92428 1.21401 1.31821 1.13326 0.90227 0.92086 1.24865 0.94767 0.94940 0.98929 1.69852 1.36327 1.22608 1.23901 0.86519 0.79387 0.79431 0.82282 1.20554 1.21085 1.19853 1.48246 1.45495 1.13900 1.24599 1.21366 0.98712 0.83892 1.00899 1.20422 0.78530 0.88707 0.82139 1.90597 1.54843 1.68184 1.31776 1.21295 0.96118 0.92587 1.02674 0.87884 1.21495 0.97940 0.93833 1.01387 1.21507 0.96390 0.96300 1.00996 1.21540 0.94404 0.97871 1.00750 1.21405 0.92167 0.98496 1.00972 0.88110 1.20793 0.86198 0.81793 0.80533 1.43928 1.30477 1.12805 1.55165 1.90756 1.61900 1.47123 1.41666 1.21131 0.96196 0.92293 1.01879 0.94897 0.96855 0.88769 0.92621 0.94374 0.90624 0.92466 0.91884 0.90547 0.91003 0.91410 0.91772 0.91429 0.77145 0.77248 0.91115 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.91 37.16 0.33 -2.94 16 2 C 0.25 5.72 2.00 -69.08 -0.14 5.58 16 3 H 0.06 1.33 4.88 -51.93 -0.25 1.08 16 4 C -0.53 -13.37 8.02 -34.44 -0.28 -13.65 16 5 H 0.06 1.59 7.68 -52.49 -0.40 1.19 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -22.82 11.32 55.43 0.63 -22.20 16 8 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.59 -12.76 2.75 -175.27 -0.48 -13.24 16 13 C 0.09 1.87 9.29 59.84 0.56 2.43 16 14 C 0.51 10.95 6.83 -10.99 -0.08 10.87 16 15 O -0.57 -13.60 15.67 5.55 0.09 -13.51 16 16 C -0.11 -1.86 1.66 -91.77 -0.15 -2.01 16 17 H 0.10 1.90 6.50 -51.93 -0.34 1.56 16 18 C -0.11 -1.63 4.96 -26.73 -0.13 -1.77 16 19 C -0.11 -1.33 5.92 -26.73 -0.16 -1.49 16 20 C -0.11 -1.12 5.10 -26.73 -0.14 -1.26 16 21 C -0.11 -1.37 2.53 -91.75 -0.23 -1.60 16 22 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 23 C 0.52 6.85 7.43 -10.98 -0.08 6.77 16 24 N -0.86 -7.15 8.77 31.22 0.27 -6.88 16 25 O -0.54 -9.66 16.82 5.56 0.09 -9.57 16 26 C -0.08 -1.28 3.24 -26.70 -0.09 -1.37 16 27 H 0.03 0.70 7.49 -51.93 -0.39 0.31 16 28 H 0.01 0.25 7.91 -51.93 -0.41 -0.16 16 29 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 30 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.48 7.26 -51.93 -0.38 1.10 16 33 H 0.06 1.13 7.53 -51.93 -0.39 0.74 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.24 7.00 -51.93 -0.36 0.88 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.49 7.56 -51.93 -0.39 0.09 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.40 2.13 8.25 -40.82 -0.34 1.79 16 41 H 0.40 2.87 8.93 -40.82 -0.36 2.51 16 42 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 43 H 0.08 1.42 7.86 -51.93 -0.41 1.01 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -31.18 337.57 -6.85 -38.03 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.83 Total: 6.07 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.68 Total: 1.18 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.42 Total: -42.31 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.18 Total: -23.08 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.18 -6.85 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345431211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.602 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds