Wall clock time and date at job start Tue Mar 31 2020 05:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46809 * 2 1 4 4 C 1.50697 * 109.47163 * 239.99832 * 2 1 3 5 5 H 1.07998 * 119.99871 * 239.99570 * 4 2 1 6 6 C 1.37880 * 120.00053 * 59.99641 * 4 2 1 7 7 N 1.31516 * 119.99855 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99829 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47316 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46948 * 120.00664 * 8 6 4 11 11 H 1.48505 * 109.47293 * 240.00217 * 8 6 4 12 12 N 1.46496 * 109.47122 * 119.99503 * 2 1 3 13 13 C 1.46501 * 120.00182 * 60.00335 * 12 2 1 14 14 C 1.34777 * 120.00012 * 240.00191 * 12 2 1 15 15 O 1.21278 * 120.00191 * 0.02562 * 14 12 2 16 16 C 1.50706 * 119.99808 * 180.02562 * 14 12 2 17 17 H 1.08992 * 109.47518 * 59.99767 * 16 14 12 18 18 C 1.53000 * 109.46735 * 299.99422 * 16 14 12 19 19 C 1.52997 * 109.47060 * 180.02562 * 18 16 14 20 20 C 1.52999 * 109.47317 * 59.99960 * 19 18 16 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 23 23 C 1.50699 * 109.47155 * 179.97438 * 21 20 19 24 24 N 1.34787 * 120.00196 * 59.99459 * 23 21 20 25 25 O 1.21280 * 120.00255 * 239.99729 * 23 21 20 26 26 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 27 27 H 1.09000 * 109.47176 * 60.00462 * 1 2 3 28 28 H 1.08999 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47503 * 300.00279 * 1 2 3 30 30 H 0.97005 * 119.99289 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47164 * 269.99843 * 13 12 2 32 32 H 1.09003 * 109.47022 * 29.99641 * 13 12 2 33 33 H 1.08993 * 109.47447 * 149.99384 * 13 12 2 34 34 H 1.09002 * 109.47398 * 300.00410 * 18 16 14 35 35 H 1.09001 * 109.47194 * 60.00591 * 18 16 14 36 36 H 1.08996 * 109.47853 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.47153 * 300.00319 * 19 18 16 38 38 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 40 40 H 0.96998 * 119.99778 * 0.02562 * 24 23 21 41 41 H 0.96997 * 119.99832 * 179.97438 * 24 23 21 42 42 H 1.08993 * 109.47194 * 179.97438 * 26 21 20 43 43 H 1.09002 * 109.46695 * 59.99734 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1474 -2.2864 -3.6037 10 1 1.1678 -1.5867 -4.8164 11 1 3.1473 -0.1859 -4.8161 12 7 2.0183 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4282 14 6 2.7931 -0.0354 2.0833 15 8 3.0857 1.1258 1.8916 16 6 3.2959 -0.7459 3.3136 17 1 3.9016 -1.6021 3.0167 18 6 2.1062 -1.2271 4.1465 19 6 2.6165 -1.9479 5.3959 20 6 3.4662 -0.9858 6.2285 21 6 4.6559 -0.5045 5.3955 22 1 5.2619 -1.3606 5.0989 23 6 5.4924 0.4437 6.2154 24 7 6.0504 0.0252 7.3688 25 8 5.6635 1.5833 5.8375 26 6 4.1455 0.2163 4.1462 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.7094 1.1616 -3.4845 31 1 0.7376 -2.1443 1.9995 32 1 1.5295 -2.5968 0.4710 33 1 2.4629 -2.5817 1.9864 34 1 1.5004 -0.3710 4.4434 35 1 1.5007 -1.9124 3.5532 36 1 1.7691 -2.2912 5.9891 37 1 3.2225 -2.8041 5.0993 38 1 3.8302 -1.4994 7.1183 39 1 2.8602 -0.1297 6.5250 40 1 5.9139 -0.8864 7.6708 41 1 6.5891 0.6354 7.8963 42 1 4.9931 0.5596 3.5530 43 1 3.5395 1.0724 4.4428 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345431217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:26 Heat of formation + Delta-G solvation = -94.832582 kcal Electronic energy + Delta-G solvation = -23239.557635 eV Core-core repulsion = 19897.778176 eV Total energy + Delta-G solvation = -3341.779459 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40427 -39.16373 -37.01397 -35.29088 -33.88304 -32.92673 -31.17707 -30.82205 -28.99948 -26.18378 -25.19242 -24.01108 -23.51019 -21.24698 -20.50651 -19.71947 -18.35661 -17.55738 -16.70975 -16.40020 -16.04857 -15.48762 -15.15214 -14.82623 -14.67665 -14.20672 -13.81840 -13.63659 -13.41048 -12.75331 -12.56498 -12.42439 -12.33366 -12.04761 -11.59394 -11.56292 -11.32581 -11.10429 -11.03911 -10.83280 -10.73484 -10.66803 -10.40263 -10.31826 -10.19277 -10.13923 -9.85613 -9.78373 -9.13010 -8.74828 -8.38812 -7.51438 -6.04289 -4.12119 2.55165 3.27449 3.34618 3.35854 3.38066 3.47899 4.01459 4.41642 4.52451 4.62397 4.63594 5.02864 5.11931 5.17770 5.26278 5.28407 5.30633 5.39694 5.50106 5.57658 5.82384 5.88958 5.92557 5.95300 6.00718 6.13154 6.16869 6.37032 6.47712 6.55339 6.64784 6.79568 6.87819 7.11334 7.15156 7.48930 7.59360 7.76013 8.06451 8.15213 8.24575 8.60507 8.87881 9.15270 9.54527 11.01029 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028337 B = 0.003975 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.877796 B = 7041.741977 C = 7364.361032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.593 5.593 13 C 0.083 3.917 14 C 0.506 3.494 15 O -0.549 6.549 16 C -0.105 4.105 17 H 0.090 0.910 18 C -0.126 4.126 19 C -0.113 4.113 20 C -0.110 4.110 21 C -0.108 4.108 22 H 0.098 0.902 23 C 0.519 3.481 24 N -0.860 5.860 25 O -0.534 6.534 26 C -0.078 4.078 27 H 0.092 0.908 28 H 0.028 0.972 29 H 0.010 0.990 30 H 0.262 0.738 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.399 0.601 41 H 0.398 0.602 42 H 0.076 0.924 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 -9.966 19.397 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.324 5.324 13 C -0.060 4.060 14 C 0.293 3.707 15 O -0.427 6.427 16 C -0.126 4.126 17 H 0.108 0.892 18 C -0.163 4.163 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.129 4.129 22 H 0.116 0.884 23 C 0.304 3.696 24 N -0.424 5.424 25 O -0.409 6.409 26 C -0.116 4.116 27 H 0.111 0.889 28 H 0.048 0.952 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.227 0.773 41 H 0.229 0.771 42 H 0.095 0.905 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.249 -8.524 18.704 20.989 hybrid contribution 0.488 -0.826 -0.501 1.082 sum 4.737 -9.349 18.203 21.005 Atomic orbital electron populations 1.22071 0.98285 0.99272 1.00727 1.18920 0.90811 0.94581 0.80058 0.91960 1.21365 1.31647 1.12951 0.90351 0.92237 1.24903 0.94986 0.94994 0.98969 1.69898 1.36470 1.22607 1.23584 0.86449 0.78569 0.79575 0.82833 1.19843 1.20980 1.20925 1.48194 1.49181 1.11456 1.23571 1.21712 0.98594 0.83651 1.02087 1.20340 0.79187 0.87118 0.84065 1.90664 1.58132 1.17159 1.76781 1.21295 0.97767 0.99222 0.94357 0.89151 1.21831 0.97165 1.01186 0.96144 1.21508 0.99392 0.97828 0.96372 1.21554 0.95916 0.99876 0.97429 1.21393 0.96682 0.98314 0.96526 0.88438 1.20768 0.79174 0.88599 0.81032 1.43928 1.55803 1.17341 1.25359 1.90786 1.60237 1.19953 1.69957 1.21113 1.00167 0.97174 0.93132 0.88933 0.95249 0.97082 0.92777 0.93729 0.90372 0.92651 0.91455 0.89848 0.91362 0.91573 0.91752 0.91234 0.77257 0.77139 0.90520 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.97 37.16 0.33 -3.18 16 2 C 0.26 6.65 2.64 -69.09 -0.18 6.47 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.52 -14.30 7.99 -34.44 -0.28 -14.57 16 5 H 0.06 1.59 7.33 -52.49 -0.38 1.21 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.59 -12.65 2.75 -175.27 -0.48 -13.13 16 13 C 0.08 1.36 7.80 59.85 0.47 1.83 16 14 C 0.51 10.63 7.08 -10.98 -0.08 10.56 16 15 O -0.55 -14.13 15.31 5.56 0.09 -14.04 16 16 C -0.10 -1.55 1.72 -91.77 -0.16 -1.71 16 17 H 0.09 1.18 7.40 -51.93 -0.38 0.79 16 18 C -0.13 -1.48 4.84 -26.73 -0.13 -1.61 16 19 C -0.11 -0.93 5.92 -26.73 -0.16 -1.09 16 20 C -0.11 -0.89 5.10 -26.73 -0.14 -1.03 16 21 C -0.11 -1.12 2.53 -91.77 -0.23 -1.35 16 22 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 23 C 0.52 6.09 7.43 -10.98 -0.08 6.01 16 24 N -0.86 -5.95 8.77 31.22 0.27 -5.68 16 25 O -0.53 -9.13 16.82 5.56 0.09 -9.04 16 26 C -0.08 -1.17 3.06 -26.73 -0.08 -1.25 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 28 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 31 H 0.04 0.64 6.95 -51.93 -0.36 0.28 16 32 H 0.08 1.38 7.02 -51.93 -0.36 1.01 16 33 H 0.05 0.73 6.01 -51.93 -0.31 0.41 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.95 4.53 -51.93 -0.24 0.71 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.35 7.56 -51.93 -0.39 -0.05 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.40 1.46 8.25 -40.82 -0.34 1.12 16 41 H 0.40 2.44 8.93 -40.82 -0.36 2.07 16 42 H 0.08 1.34 8.06 -51.93 -0.42 0.92 16 43 H 0.08 1.34 8.06 -51.93 -0.42 0.92 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -35.18 334.08 -6.91 -42.09 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.72 Total: 2.67 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.81 Total: 0.74 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.42 Total: -43.64 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.18 Total: -23.08 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.18 -6.91 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345431217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.744 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds