Wall clock time and date at job start Tue Mar 31 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46972 * 2 1 4 4 C 1.50697 * 109.47049 * 239.99914 * 2 1 3 5 5 H 1.08002 * 120.00073 * 240.00083 * 4 2 1 6 6 C 1.37882 * 119.99979 * 60.00428 * 4 2 1 7 7 N 1.31515 * 119.99858 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00076 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47029 * 59.99782 * 8 6 4 10 10 H 1.48497 * 109.46875 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47055 * 299.99848 * 8 6 4 12 12 N 1.46505 * 109.47326 * 120.00161 * 2 1 3 13 13 C 1.46498 * 119.99850 * 56.20425 * 12 2 1 14 14 C 1.34771 * 119.99907 * 236.21489 * 12 2 1 15 15 O 1.21284 * 120.00014 * 184.17158 * 14 12 2 16 16 C 1.50696 * 120.00237 * 4.16074 * 14 12 2 17 17 H 1.08998 * 109.47726 * 319.87753 * 16 14 12 18 18 C 1.53005 * 109.47028 * 79.87824 * 16 14 12 19 19 C 1.52993 * 109.47241 * 179.97438 * 18 16 14 20 20 C 1.52992 * 109.47550 * 300.00117 * 19 18 16 21 21 C 1.53006 * 109.47316 * 59.99733 * 20 19 18 22 22 H 1.08995 * 109.47245 * 180.02562 * 21 20 19 23 23 C 1.50699 * 109.46676 * 60.00369 * 21 20 19 24 24 N 1.34772 * 120.00224 * 60.00077 * 23 21 20 25 25 O 1.21285 * 119.99559 * 239.99730 * 23 21 20 26 26 C 1.52998 * 109.46751 * 300.00387 * 21 20 19 27 27 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46856 * 300.00110 * 1 2 3 29 29 H 1.09004 * 109.47038 * 59.99758 * 1 2 3 30 30 H 0.97001 * 120.00179 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47580 * 264.75724 * 13 12 2 32 32 H 1.09005 * 109.46955 * 24.76091 * 13 12 2 33 33 H 1.08998 * 109.47055 * 144.75344 * 13 12 2 34 34 H 1.08998 * 109.46925 * 59.99438 * 18 16 14 35 35 H 1.09005 * 109.46727 * 300.00077 * 18 16 14 36 36 H 1.09002 * 109.47090 * 60.00314 * 19 18 16 37 37 H 1.09008 * 109.46980 * 179.97438 * 19 18 16 38 38 H 1.08999 * 109.47646 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.47085 * 300.00201 * 20 19 18 40 40 H 0.97001 * 119.99855 * 0.02562 * 24 23 21 41 41 H 0.96995 * 120.00018 * 179.97438 * 24 23 21 42 42 H 1.09007 * 109.47001 * 179.97438 * 26 21 20 43 43 H 1.09002 * 109.47392 * 299.99374 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.8280 -2.5198 -4.0082 10 1 1.8269 -0.4198 -5.2204 11 1 3.8075 -1.1189 -4.0077 12 7 2.0184 -0.6907 1.1962 13 6 1.5973 -2.0667 1.4707 14 6 2.8550 -0.0600 2.0440 15 8 3.3191 -0.6557 2.9931 16 6 3.2139 1.3852 1.8127 17 1 3.3616 1.5568 0.7465 18 6 2.0814 2.2796 2.3212 19 6 2.4461 3.7469 2.0870 20 6 3.7355 4.0786 2.8408 21 6 4.8680 3.1842 2.3323 22 1 5.7865 3.4202 2.8696 23 6 5.0725 3.4219 0.8583 24 7 5.4029 4.6504 0.4133 25 8 4.9397 2.5076 0.0725 26 6 4.5033 1.7169 2.5666 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.7082 1.1610 -3.4844 31 1 0.7428 -2.0570 2.1473 32 1 1.3159 -2.5537 0.5370 33 1 2.4198 -2.6132 1.9320 34 1 1.9338 2.1079 3.3874 35 1 1.1627 2.0429 1.7845 36 1 2.5940 3.9188 1.0209 37 1 1.6390 4.3840 2.4489 38 1 3.9955 5.1238 2.6736 39 1 3.5876 3.9067 3.9069 40 1 5.5095 5.3815 1.0418 41 1 5.5349 4.8033 -0.5354 42 1 5.3099 1.0797 2.2040 43 1 4.3554 1.5450 3.6328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345431227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:28 Heat of formation + Delta-G solvation = -93.044128 kcal Electronic energy + Delta-G solvation = -24289.442052 eV Core-core repulsion = 20947.740146 eV Total energy + Delta-G solvation = -3341.701906 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.46377 -38.80693 -36.47156 -35.39215 -33.63701 -32.50754 -30.90590 -30.56877 -29.02647 -26.35054 -25.17670 -23.72468 -22.65293 -21.35989 -21.02825 -19.20686 -18.04783 -17.06155 -16.52375 -16.18519 -16.09047 -15.42814 -14.75044 -14.48701 -14.41231 -14.08926 -13.73697 -13.44633 -13.14234 -12.57261 -12.39675 -12.26020 -11.93735 -11.86285 -11.56111 -11.52639 -11.22808 -11.02629 -10.85969 -10.81528 -10.72967 -10.56697 -10.26963 -10.12823 -10.04822 -9.87311 -9.51013 -9.29369 -9.17572 -8.68006 -8.37733 -7.47935 -6.05026 -4.11609 2.89475 3.32675 3.35912 3.40202 3.57786 3.68594 4.13888 4.44163 4.79489 4.86206 4.89599 5.19885 5.26604 5.46757 5.49712 5.56446 5.58692 5.74550 5.75919 6.02549 6.06114 6.18358 6.27847 6.29743 6.36976 6.43018 6.46070 6.58338 6.66282 6.68054 6.82896 6.87452 7.00293 7.05942 7.34417 7.47906 7.54687 7.80411 7.99957 8.25753 8.51875 8.60355 8.90347 9.19927 9.55531 10.99767 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.007108 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.856765 B = 3938.306837 C = 4816.651401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.253 3.747 3 H 0.060 0.940 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.592 5.592 13 C 0.095 3.905 14 C 0.517 3.483 15 O -0.583 6.583 16 C -0.119 4.119 17 H 0.132 0.868 18 C -0.107 4.107 19 C -0.120 4.120 20 C -0.108 4.108 21 C -0.108 4.108 22 H 0.095 0.905 23 C 0.513 3.487 24 N -0.862 5.862 25 O -0.514 6.514 26 C -0.078 4.078 27 H 0.031 0.969 28 H 0.011 0.989 29 H 0.094 0.906 30 H 0.263 0.737 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.396 0.604 41 H 0.399 0.601 42 H 0.069 0.931 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.365 10.174 8.668 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.152 3.848 3 H 0.077 0.923 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.321 5.321 13 C -0.049 4.049 14 C 0.306 3.694 15 O -0.465 6.465 16 C -0.140 4.140 17 H 0.149 0.851 18 C -0.145 4.145 19 C -0.157 4.157 20 C -0.146 4.146 21 C -0.130 4.130 22 H 0.113 0.887 23 C 0.298 3.702 24 N -0.426 5.426 25 O -0.388 6.388 26 C -0.116 4.116 27 H 0.051 0.949 28 H 0.030 0.970 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.224 0.776 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.353 9.233 8.615 13.357 hybrid contribution 0.368 0.006 -1.133 1.191 sum 4.721 9.239 7.482 12.792 Atomic orbital electron populations 1.22128 0.98197 0.99800 1.00661 1.19095 0.91195 0.93759 0.80705 0.92285 1.21322 1.31586 1.13150 0.90278 0.92278 1.24839 0.94782 0.94940 0.98855 1.69843 1.36469 1.22682 1.23768 0.86577 0.79425 0.79605 0.81967 1.20291 1.21236 1.20156 1.48245 1.45460 1.13785 1.24651 1.21356 0.98589 0.84085 1.00849 1.20520 0.78144 0.88964 0.81780 1.90544 1.55316 1.68567 1.32098 1.21567 0.95184 0.91880 1.05334 0.85073 1.21473 0.98250 0.93811 1.00970 1.21552 0.96746 0.96611 1.00831 1.21547 0.94412 0.97878 1.00765 1.21411 1.00219 0.98701 0.92661 0.88667 1.20718 0.75586 0.82485 0.91406 1.43912 1.74936 1.11561 1.12183 1.90828 1.48321 1.42144 1.57488 1.21128 0.97414 0.92374 1.00673 0.94944 0.96992 0.88779 0.92753 0.94466 0.90660 0.92561 0.92154 0.90841 0.91540 0.91566 0.91834 0.90704 0.77643 0.77075 0.91261 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.91 37.16 0.33 -3.18 16 2 C 0.25 6.30 2.00 -69.08 -0.14 6.16 16 3 H 0.06 1.56 4.88 -51.93 -0.25 1.31 16 4 C -0.52 -14.42 8.02 -34.44 -0.28 -14.69 16 5 H 0.06 1.66 7.69 -52.49 -0.40 1.26 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.98 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.59 -13.73 2.75 -175.26 -0.48 -14.21 16 13 C 0.09 1.98 9.29 59.85 0.56 2.53 16 14 C 0.52 11.74 6.83 -10.99 -0.08 11.66 16 15 O -0.58 -14.06 15.67 5.55 0.09 -13.97 16 16 C -0.12 -2.33 1.36 -91.77 -0.12 -2.45 16 17 H 0.13 2.99 3.87 -51.93 -0.20 2.79 16 18 C -0.11 -1.78 4.96 -26.73 -0.13 -1.91 16 19 C -0.12 -1.59 5.70 -26.74 -0.15 -1.74 16 20 C -0.11 -1.13 5.36 -26.73 -0.14 -1.27 16 21 C -0.11 -1.35 3.01 -91.77 -0.28 -1.63 16 22 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 23 C 0.51 7.50 5.91 -10.99 -0.06 7.44 16 24 N -0.86 -8.58 8.77 31.22 0.27 -8.31 16 25 O -0.51 -10.53 14.49 5.55 0.08 -10.45 16 26 C -0.08 -1.29 3.84 -26.73 -0.10 -1.39 16 27 H 0.03 0.73 7.49 -51.93 -0.39 0.34 16 28 H 0.01 0.24 7.91 -51.93 -0.41 -0.17 16 29 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.56 7.26 -51.93 -0.38 1.19 16 33 H 0.06 1.16 7.53 -51.93 -0.39 0.77 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.34 7.00 -51.93 -0.36 0.98 16 36 H 0.07 1.01 7.22 -51.93 -0.37 0.63 16 37 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.06 0.49 7.56 -51.93 -0.39 0.09 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.40 2.48 8.25 -40.82 -0.34 2.15 16 41 H 0.40 3.87 8.93 -40.82 -0.36 3.51 16 42 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 43 H 0.07 1.19 7.90 -51.93 -0.41 0.78 16 LS Contribution 331.03 15.07 4.99 4.99 Total: -1.00 -33.09 331.03 -6.79 -39.88 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.65 Total: 8.22 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.69 Total: 1.30 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.42 Total: -46.50 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: 0.17 Total: -24.42 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.09 -6.79 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345431227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.164 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds