Wall clock time and date at job start Tue Mar 31 2020 06:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46980 * 2 1 4 4 C 1.37098 * 120.00316 * 269.01311 * 3 2 1 5 5 H 1.08001 * 119.99929 * 141.20605 * 4 3 2 6 6 C 1.38948 * 119.99718 * 321.21473 * 4 3 2 7 7 N 1.31405 * 120.00150 * 339.55239 * 6 4 3 8 8 Si 1.86804 * 119.99731 * 159.55963 * 6 4 3 9 9 H 1.48499 * 109.46990 * 59.99496 * 8 6 4 10 10 H 1.48498 * 109.47037 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47187 * 299.99755 * 8 6 4 12 12 C 1.34784 * 119.99902 * 89.01960 * 3 2 1 13 13 O 1.21290 * 120.00092 * 180.02562 * 12 3 2 14 14 C 1.50697 * 120.00004 * 359.97438 * 12 3 2 15 15 H 1.09000 * 109.47062 * 320.00603 * 14 12 3 16 16 C 1.53004 * 109.46895 * 80.00304 * 14 12 3 17 17 C 1.53000 * 109.46954 * 185.00350 * 16 14 12 18 18 C 1.53785 * 113.61118 * 272.49828 * 17 16 14 19 19 C 1.53788 * 87.07829 * 220.02095 * 18 17 16 20 20 C 1.53780 * 87.08180 * 25.43406 * 19 18 17 21 21 N 1.46498 * 109.47349 * 200.00508 * 14 12 3 22 22 C 1.34781 * 119.99340 * 299.99946 * 21 14 12 23 23 C 1.50701 * 119.99325 * 179.97438 * 22 21 14 24 24 O 1.21278 * 120.00571 * 0.02562 * 22 21 14 25 25 H 1.09007 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46616 * 299.99360 * 1 2 3 27 27 H 1.08997 * 109.47443 * 59.99349 * 1 2 3 28 28 H 1.09001 * 109.46947 * 240.00210 * 2 1 3 29 29 H 1.09000 * 109.47224 * 120.00161 * 2 1 3 30 30 H 0.97008 * 120.00214 * 180.02562 * 7 6 4 31 31 H 1.08992 * 109.47035 * 64.99748 * 16 14 12 32 32 H 1.09004 * 109.47265 * 305.00023 * 16 14 12 33 33 H 1.09000 * 112.85379 * 43.79965 * 17 16 14 34 34 H 1.09003 * 113.61261 * 334.56341 * 18 17 16 35 35 H 1.08992 * 113.61466 * 105.47092 * 18 17 16 36 36 H 1.08993 * 113.61286 * 270.87829 * 19 18 17 37 37 H 1.09000 * 113.61112 * 139.98123 * 19 18 17 38 38 H 1.09003 * 113.61244 * 220.02246 * 20 19 18 39 39 H 1.08991 * 113.69468 * 89.12684 * 20 19 18 40 40 H 0.96996 * 119.99900 * 120.00356 * 21 14 12 41 41 H 1.08998 * 109.47706 * 0.02562 * 23 22 21 42 42 H 1.09008 * 109.46813 * 120.00135 * 23 22 21 43 43 H 1.09000 * 109.47269 * 240.00035 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2661 2.0207 -1.1871 5 1 2.0158 3.0652 -1.3003 6 6 2.8391 1.3250 -2.2446 7 7 3.5033 0.2143 -2.0172 8 14 2.6652 1.9689 -3.9895 9 1 3.2702 3.3220 -4.0804 10 1 3.3616 1.0518 -4.9272 11 1 1.2262 2.0450 -4.3480 12 6 2.2241 2.0232 1.1671 13 8 2.6279 3.1669 1.1671 14 6 1.9513 1.3204 2.4720 15 1 1.0420 0.7263 2.3815 16 6 3.1277 0.4035 2.8130 17 6 2.7980 -0.4027 4.0708 18 6 3.1708 0.3159 5.3783 19 6 3.6475 -1.0497 5.9008 20 6 3.8681 -1.4466 4.4315 21 7 1.7820 2.3136 3.5355 22 6 2.7848 3.1654 3.8278 23 6 2.6104 4.1875 4.9215 24 8 3.8270 3.1100 3.2101 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9037 -0.2713 -2.7555 31 1 4.0184 1.0061 2.9906 32 1 3.3100 -0.2780 1.9820 33 1 1.7836 -0.8015 4.0642 34 1 3.9740 1.0437 5.2628 35 1 2.3117 0.7141 5.9180 36 1 2.8653 -1.6250 6.3958 37 1 4.5682 -0.9976 6.4819 38 1 3.5717 -2.4712 4.2068 39 1 4.8614 -1.2013 4.0559 40 1 0.9483 2.3581 4.0293 41 1 1.6171 4.0860 5.3587 42 1 3.3643 4.0270 5.6922 43 1 2.7239 5.1883 4.5049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345725997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:53 Heat of formation + Delta-G solvation = -48.056960 kcal Electronic energy + Delta-G solvation = -24111.866629 eV Core-core repulsion = 20772.115514 eV Total energy + Delta-G solvation = -3339.751116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.99538 -38.24528 -37.79886 -34.82835 -34.08533 -32.01797 -30.98494 -29.36254 -28.71500 -26.08181 -25.43465 -24.18992 -22.41845 -21.63405 -20.35919 -19.17013 -18.54558 -17.02192 -16.57396 -15.72517 -15.57793 -15.17594 -14.70565 -14.44634 -14.37267 -13.90053 -13.35969 -13.31193 -12.80728 -12.78613 -12.56024 -12.31966 -12.25568 -12.01797 -11.74502 -11.70893 -11.54710 -11.12664 -11.01168 -10.91217 -10.74299 -10.39101 -10.32315 -10.27873 -10.08226 -9.98923 -9.84951 -9.05886 -8.86553 -8.83122 -7.79998 -7.29794 -6.20820 -3.86472 3.25180 3.30674 3.32712 3.37529 3.73232 4.05040 4.29472 4.76590 4.82458 4.86686 4.99612 5.04606 5.12126 5.29402 5.39378 5.59937 5.62758 5.67726 5.71576 5.78373 5.89871 5.93518 5.95009 5.98758 6.02818 6.06681 6.12674 6.26277 6.27044 6.37634 6.48769 6.52991 6.61018 6.86164 6.94700 7.06158 7.30520 7.68910 8.09401 8.39343 8.64705 8.97725 9.35026 9.53442 10.18194 10.83096 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.005898 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.326063 B = 4746.397951 C = 5437.532500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.446 5.446 4 C -0.303 4.303 5 H 0.085 0.915 6 C 0.037 3.963 7 N -0.871 5.871 8 Si 0.915 3.085 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.455 3.545 13 O -0.550 6.550 14 C 0.138 3.862 15 H 0.090 0.910 16 C -0.121 4.121 17 C -0.102 4.102 18 C -0.129 4.129 19 C -0.145 4.145 20 C -0.137 4.137 21 N -0.718 5.718 22 C 0.512 3.488 23 C -0.168 4.168 24 O -0.509 6.509 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.051 0.949 30 H 0.266 0.734 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.392 0.608 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.760 -3.934 14.082 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.031 4.031 3 N -0.167 5.167 4 C -0.431 4.431 5 H 0.103 0.897 6 C -0.167 4.167 7 N -0.509 5.509 8 Si 0.742 3.258 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.241 3.759 13 O -0.430 6.430 14 C 0.030 3.970 15 H 0.108 0.892 16 C -0.160 4.160 17 C -0.121 4.121 18 C -0.167 4.167 19 C -0.182 4.182 20 C -0.174 4.174 21 N -0.371 5.371 22 C 0.298 3.702 23 C -0.228 4.228 24 O -0.382 6.382 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.225 0.775 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.654 -3.515 13.498 14.704 hybrid contribution -0.601 0.116 -0.723 0.947 sum -5.255 -3.400 12.775 14.226 Atomic orbital electron populations 1.22209 0.98460 1.00121 1.01374 1.21605 0.91629 0.86039 1.03825 1.43416 1.57263 1.11787 1.04226 1.19281 1.39256 0.96763 0.87832 0.89713 1.25346 0.94321 0.96735 1.00296 1.69917 1.31002 1.17790 1.32221 0.86184 0.78405 0.78888 0.82316 1.19875 1.21070 1.20050 1.20539 0.81976 0.88436 0.84941 1.90559 1.47428 1.18541 1.86515 1.20916 0.99424 0.89203 0.87482 0.89194 1.21924 0.99257 0.97522 0.97251 1.22497 0.98612 0.96345 0.94619 1.22929 1.00793 0.96197 0.96768 1.22825 1.00911 0.97868 0.96594 1.22923 0.99831 0.98764 0.95922 1.45677 1.17423 1.36313 1.37688 1.20373 0.84182 0.81510 0.84107 1.21822 1.02931 0.99810 0.98233 1.90738 1.27730 1.69551 1.50191 0.93228 0.94233 0.92359 0.87577 0.93035 0.92406 0.89194 0.90230 0.89789 0.90304 0.92152 0.90669 0.92004 0.91800 0.90123 0.77488 0.91412 0.89670 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.09 37.16 0.37 -2.52 16 2 C 0.09 2.01 5.28 -4.04 -0.02 1.99 16 3 N -0.45 -11.42 2.51 -114.81 -0.29 -11.71 16 4 C -0.30 -8.65 8.88 -14.93 -0.13 -8.78 16 5 H 0.09 2.55 7.79 -52.49 -0.41 2.14 16 6 C 0.04 1.00 4.96 -17.47 -0.09 0.92 16 7 N -0.87 -24.09 11.51 55.50 0.64 -23.45 16 8 Si 0.92 21.24 29.60 -169.99 -5.03 16.21 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.46 11.39 6.62 -10.98 -0.07 11.32 16 13 O -0.55 -16.14 13.57 -17.94 -0.24 -16.38 16 14 C 0.14 2.56 2.16 -69.08 -0.15 2.41 16 15 H 0.09 1.45 6.03 -51.93 -0.31 1.13 16 16 C -0.12 -2.17 4.08 -26.73 -0.11 -2.28 16 17 C -0.10 -1.37 3.52 -89.80 -0.32 -1.69 16 18 C -0.13 -1.58 6.39 -25.91 -0.17 -1.74 16 19 C -0.14 -1.56 8.08 -25.92 -0.21 -1.77 16 20 C -0.14 -1.70 7.64 -25.92 -0.20 -1.90 16 21 N -0.72 -11.33 4.34 -54.93 -0.24 -11.57 16 22 C 0.51 9.11 5.85 -10.98 -0.06 9.05 16 23 C -0.17 -2.07 10.39 36.01 0.37 -1.69 16 24 O -0.51 -11.98 12.96 -17.93 -0.23 -12.21 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.64 7.05 -51.93 -0.37 0.27 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.11 2.56 5.59 -51.93 -0.29 2.27 16 29 H 0.05 1.00 4.86 -51.93 -0.25 0.75 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.09 1.91 5.75 -51.93 -0.30 1.61 16 32 H 0.08 1.55 6.40 -51.93 -0.33 1.22 16 33 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 34 H 0.08 1.12 7.62 -51.93 -0.40 0.72 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 40 H 0.39 4.57 8.67 -40.82 -0.35 4.21 16 41 H 0.07 0.61 7.91 -51.93 -0.41 0.20 16 42 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 337.08 15.07 5.08 5.08 Total: -1.00 -35.14 337.08 -7.87 -43.02 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.78 Total: 7.72 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -0.78 Total: 3.31 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.11 Total: -46.74 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.48 Total: -28.60 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.14 -7.87 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345725997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.041 kcal (2) G-P(sol) polarization free energy of solvation -35.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds