Wall clock time and date at job start Tue Mar 31 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47027 * 2 1 4 4 C 1.37098 * 120.00205 * 267.68509 * 3 2 1 5 5 H 1.08001 * 120.00098 * 191.00150 * 4 3 2 6 6 C 1.38952 * 119.99884 * 11.01051 * 4 3 2 7 7 N 1.31413 * 120.00249 * 19.03325 * 6 4 3 8 8 Si 1.86794 * 119.99916 * 199.03864 * 6 4 3 9 9 H 1.48495 * 109.47409 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47273 * 119.99674 * 8 6 4 11 11 H 1.48510 * 109.46916 * 239.99525 * 8 6 4 12 12 C 1.34775 * 119.99837 * 87.68439 * 3 2 1 13 13 O 1.21295 * 120.00167 * 4.40760 * 12 3 2 14 14 C 1.50706 * 119.99782 * 184.41085 * 12 3 2 15 15 H 1.08996 * 109.46953 * 41.79683 * 14 12 3 16 16 C 1.52999 * 109.47025 * 281.79235 * 14 12 3 17 17 C 1.53001 * 109.47033 * 179.78491 * 16 14 12 18 18 C 1.53778 * 113.61820 * 272.49947 * 17 16 14 19 19 C 1.53771 * 87.08056 * 220.01951 * 18 17 16 20 20 C 1.53776 * 113.61249 * 175.00144 * 17 16 14 21 21 N 1.46505 * 109.47112 * 161.79702 * 14 12 3 22 22 C 1.34780 * 119.99967 * 59.99650 * 21 14 12 23 23 C 1.50699 * 119.99957 * 180.02562 * 22 21 14 24 24 O 1.21280 * 119.99927 * 0.02562 * 22 21 14 25 25 H 1.09006 * 109.47073 * 183.52152 * 1 2 3 26 26 H 1.09004 * 109.47748 * 303.51738 * 1 2 3 27 27 H 1.09004 * 109.47442 * 63.51878 * 1 2 3 28 28 H 1.09003 * 109.47283 * 240.00248 * 2 1 3 29 29 H 1.08995 * 109.47471 * 119.99602 * 2 1 3 30 30 H 0.96998 * 120.00056 * 180.02562 * 7 6 4 31 31 H 1.08992 * 109.47211 * 299.79078 * 16 14 12 32 32 H 1.09006 * 109.46856 * 59.79106 * 16 14 12 33 33 H 1.08998 * 112.84746 * 43.81048 * 17 16 14 34 34 H 1.08998 * 113.61154 * 334.57135 * 18 17 16 35 35 H 1.08997 * 113.61332 * 105.46696 * 18 17 16 36 36 H 1.09004 * 113.61554 * 270.88335 * 19 18 17 37 37 H 1.09007 * 113.61294 * 139.98445 * 19 18 17 38 38 H 1.09001 * 113.61734 * 254.53548 * 20 17 16 39 39 H 1.09003 * 113.61798 * 25.35342 * 20 17 16 40 40 H 0.96993 * 119.99934 * 240.00164 * 21 14 12 41 41 H 1.09000 * 109.47386 * 90.00031 * 23 22 21 42 42 H 1.09004 * 109.46801 * 210.00322 * 23 22 21 43 43 H 1.09007 * 109.46971 * 330.00003 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2920 2.0116 -1.1863 5 1 2.8155 2.9563 -1.1877 6 6 1.8957 1.4352 -2.3869 7 7 0.9591 0.5135 -2.3957 8 14 2.6944 1.9704 -3.9884 9 1 3.7124 3.0149 -3.7091 10 1 3.3474 0.8015 -4.6308 11 1 1.6581 2.5206 -4.8988 12 6 2.1984 2.0323 1.1662 13 8 2.0332 1.4503 2.2175 14 6 2.6050 3.4835 1.1641 15 1 2.0445 4.0167 0.3962 16 6 4.1027 3.5931 0.8712 17 6 4.5144 5.0666 0.8637 18 6 4.3475 5.7460 -0.5057 19 6 5.6793 6.4616 -0.2250 20 6 6.0279 5.2824 0.6984 21 7 2.3194 4.0726 2.4747 22 6 2.9050 3.5720 3.5807 23 6 2.6107 4.1775 4.9289 24 8 3.6686 2.6341 3.4907 25 1 -0.3633 -1.0258 0.0631 26 1 -0.3635 0.5675 0.8568 27 1 -0.3634 0.4582 -0.9199 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 0.6827 0.1108 -3.2338 31 1 4.6632 3.0630 1.6412 32 1 4.3157 3.1514 -0.1023 33 1 4.0804 5.6315 1.6887 34 1 4.3928 5.0526 -1.3455 35 1 3.4922 6.4197 -0.5575 36 1 5.5635 7.4090 0.3013 37 1 6.3265 6.5381 -1.0989 38 1 6.5294 5.5819 1.6187 39 1 6.5330 4.4617 0.1891 40 1 1.7089 4.8228 2.5466 41 1 1.7542 3.6723 5.3751 42 1 3.4795 4.0610 5.5769 43 1 2.3858 5.2375 4.8098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345725998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:56 Heat of formation + Delta-G solvation = -40.952814 kcal Electronic energy + Delta-G solvation = -24115.942786 eV Core-core repulsion = 20776.499729 eV Total energy + Delta-G solvation = -3339.443057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.87053 -38.26129 -37.84043 -34.95161 -34.02200 -31.51286 -31.17282 -29.51524 -28.57546 -25.58198 -25.28221 -24.58667 -22.18003 -21.51373 -20.00930 -19.05122 -18.81807 -17.03273 -16.86534 -15.72727 -15.37401 -15.00982 -14.56342 -14.34191 -14.11060 -14.00021 -13.60520 -13.14926 -12.73552 -12.57706 -12.38188 -12.22659 -12.19873 -11.84932 -11.74328 -11.49591 -11.31500 -11.12959 -11.08403 -10.75710 -10.55062 -10.44499 -10.33605 -10.08193 -9.93833 -9.79996 -9.60249 -9.05319 -8.89061 -8.76750 -7.82520 -7.64870 -6.28281 -3.84228 3.08859 3.21062 3.22851 3.36831 3.77344 4.05033 4.10270 4.78364 4.89579 4.92415 5.02542 5.08754 5.15597 5.31857 5.47097 5.68244 5.75893 5.76554 5.89758 5.94056 6.01433 6.04172 6.07648 6.12044 6.17499 6.33473 6.44227 6.56047 6.69884 6.75974 6.84216 6.90241 6.98559 7.08114 7.16609 7.37486 7.50479 7.82327 7.94954 8.14599 8.52470 8.98411 9.14273 9.64237 10.06210 10.65033 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013293 B = 0.008153 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.828812 B = 3433.676038 C = 5194.488905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.141 3.859 3 N -0.446 5.446 4 C -0.330 4.330 5 H 0.102 0.898 6 C 0.033 3.967 7 N -0.860 5.860 8 Si 0.913 3.087 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.283 1.283 12 C 0.451 3.549 13 O -0.582 6.582 14 C 0.151 3.849 15 H 0.099 0.901 16 C -0.121 4.121 17 C -0.101 4.101 18 C -0.139 4.139 19 C -0.143 4.143 20 C -0.137 4.137 21 N -0.720 5.720 22 C 0.512 3.488 23 C -0.169 4.169 24 O -0.514 6.514 25 H 0.027 0.973 26 H 0.018 0.982 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.035 0.965 30 H 0.265 0.735 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.393 0.607 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 11.079 3.739 12.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 N -0.166 5.166 4 C -0.458 4.458 5 H 0.119 0.881 6 C -0.171 4.171 7 N -0.499 5.499 8 Si 0.740 3.260 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.209 1.209 12 C 0.237 3.763 13 O -0.466 6.466 14 C 0.043 3.957 15 H 0.117 0.883 16 C -0.159 4.159 17 C -0.120 4.120 18 C -0.176 4.176 19 C -0.181 4.181 20 C -0.174 4.174 21 N -0.372 5.372 22 C 0.298 3.702 23 C -0.229 4.229 24 O -0.388 6.388 25 H 0.046 0.954 26 H 0.037 0.963 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.226 0.774 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.786 9.940 4.043 11.379 hybrid contribution -0.167 0.577 -0.975 1.145 sum 3.619 10.517 3.068 11.537 Atomic orbital electron populations 1.22208 0.96934 0.98816 1.02414 1.21052 0.94298 0.83143 0.99694 1.43762 1.56707 1.11549 1.04550 1.19793 1.35856 1.07149 0.82982 0.88089 1.25201 0.95423 0.97120 0.99324 1.70115 1.25247 1.27739 1.26812 0.86082 0.79296 0.78656 0.81936 1.19277 1.20646 1.20900 1.20190 0.83414 0.88590 0.84083 1.90563 1.56697 1.68216 1.31152 1.20634 0.97047 0.94037 0.84027 0.88283 1.21911 0.94776 0.95395 1.03861 1.22477 0.95667 0.96516 0.97310 1.23028 0.97009 0.99501 0.98099 1.22798 0.98155 0.97484 0.99625 1.22919 0.96815 0.98332 0.99383 1.45726 1.48652 1.36088 1.06766 1.20397 0.80904 0.83156 0.85725 1.21853 1.04243 1.01250 0.95592 1.90689 1.35436 1.26279 1.86370 0.95377 0.96277 0.88125 0.89436 0.94707 0.92383 0.89884 0.89748 0.89787 0.89684 0.91896 0.90784 0.91948 0.92182 0.90173 0.77410 0.89500 0.89725 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.70 37.15 0.36 -3.15 16 2 C 0.14 3.61 5.34 -4.04 -0.02 3.59 16 3 N -0.45 -11.36 2.63 -114.81 -0.30 -11.66 16 4 C -0.33 -8.07 8.57 -14.93 -0.13 -8.19 16 5 H 0.10 2.29 5.03 -52.49 -0.26 2.03 16 6 C 0.03 0.80 5.02 -17.47 -0.09 0.71 16 7 N -0.86 -21.51 7.93 55.50 0.44 -21.07 16 8 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 16 9 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 10 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 C 0.45 11.18 6.61 -10.98 -0.07 11.10 16 13 O -0.58 -16.24 13.33 -17.78 -0.24 -16.48 16 14 C 0.15 2.94 2.22 -69.08 -0.15 2.79 16 15 H 0.10 1.85 7.25 -51.93 -0.38 1.48 16 16 C -0.12 -2.22 4.06 -26.73 -0.11 -2.33 16 17 C -0.10 -1.46 3.57 -89.81 -0.32 -1.78 16 18 C -0.14 -1.85 7.63 -25.93 -0.20 -2.05 16 19 C -0.14 -1.68 8.08 -25.93 -0.21 -1.89 16 20 C -0.14 -1.81 7.64 -25.92 -0.20 -2.00 16 21 N -0.72 -11.92 4.33 -54.93 -0.24 -12.16 16 22 C 0.51 9.25 6.69 -10.98 -0.07 9.17 16 23 C -0.17 -2.11 10.30 36.01 0.37 -1.74 16 24 O -0.51 -11.93 13.04 -17.76 -0.23 -12.17 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.10 2.56 5.73 -51.93 -0.30 2.26 16 28 H 0.09 2.30 6.11 -51.93 -0.32 1.98 16 29 H 0.03 0.92 7.43 -51.93 -0.39 0.53 16 30 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 31 H 0.08 1.76 6.16 -51.93 -0.32 1.44 16 32 H 0.08 1.65 5.98 -51.93 -0.31 1.34 16 33 H 0.08 1.15 7.43 -51.93 -0.39 0.76 16 34 H 0.08 1.24 7.90 -51.93 -0.41 0.83 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.39 4.96 8.83 -40.82 -0.36 4.59 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -31.35 335.17 -8.18 -39.52 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.79 Total: 10.86 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.84 Total: 4.24 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.10 Total: -44.89 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.47 Total: -28.64 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.35 -8.18 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345725998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.431 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds