Wall clock time and date at job start Tue Mar 31 2020 06:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47048 * 2 1 4 4 C 1.37103 * 119.99900 * 264.03882 * 3 2 1 5 5 H 1.08003 * 119.99936 * 188.12158 * 4 3 2 6 6 C 1.38952 * 120.00010 * 8.11829 * 4 3 2 7 7 N 1.31412 * 120.00030 * 24.26008 * 6 4 3 8 8 Si 1.86792 * 120.00002 * 204.26579 * 6 4 3 9 9 H 1.48501 * 109.47628 * 89.99840 * 8 6 4 10 10 H 1.48505 * 109.47222 * 209.99714 * 8 6 4 11 11 H 1.48501 * 109.47370 * 329.99780 * 8 6 4 12 12 C 1.34773 * 120.00236 * 84.03732 * 3 2 1 13 13 O 1.21291 * 120.00231 * 174.70402 * 12 3 2 14 14 C 1.50699 * 119.99997 * 354.69841 * 12 3 2 15 15 H 1.09001 * 110.85713 * 318.33373 * 14 12 3 16 16 C 1.54632 * 110.96584 * 82.11847 * 14 12 3 17 17 C 1.51289 * 104.19300 * 142.91669 * 16 14 12 18 18 O 1.21281 * 124.94086 * 163.71311 * 17 16 14 19 19 N 1.34419 * 110.11509 * 343.74970 * 17 16 14 20 20 C 1.46505 * 124.34630 * 179.57139 * 19 17 16 21 21 C 1.52995 * 109.47286 * 359.97438 * 20 19 17 22 22 C 1.53001 * 109.46966 * 119.97326 * 20 19 17 23 23 C 1.52998 * 109.46721 * 239.97240 * 20 19 17 24 24 C 1.46760 * 111.30121 * 359.59058 * 19 17 16 25 25 H 1.08993 * 109.47435 * 292.35260 * 1 2 3 26 26 H 1.09003 * 109.47215 * 172.34852 * 1 2 3 27 27 H 1.09004 * 109.46948 * 52.35076 * 1 2 3 28 28 H 1.09002 * 109.46931 * 119.99576 * 2 1 3 29 29 H 1.08994 * 109.47752 * 239.99940 * 2 1 3 30 30 H 0.96995 * 120.00295 * 179.97438 * 7 6 4 31 31 H 1.08998 * 110.48828 * 261.59474 * 16 14 12 32 32 H 1.09001 * 110.48850 * 24.24320 * 16 14 12 33 33 H 1.08997 * 109.47461 * 59.99562 * 21 20 19 34 34 H 1.08995 * 109.47177 * 180.02562 * 21 20 19 35 35 H 1.09004 * 109.46775 * 299.99894 * 21 20 19 36 36 H 1.09005 * 109.47211 * 59.99873 * 22 20 19 37 37 H 1.09000 * 109.47397 * 179.97438 * 22 20 19 38 38 H 1.08997 * 109.47424 * 299.99848 * 22 20 19 39 39 H 1.08994 * 109.47236 * 60.00697 * 23 20 19 40 40 H 1.09006 * 109.46385 * 180.02562 * 23 20 19 41 41 H 1.08995 * 109.47187 * 299.99786 * 23 20 19 42 42 H 1.08998 * 110.24697 * 258.01402 * 24 19 17 43 43 H 1.09003 * 110.24383 * 136.01714 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3631 1.9864 -1.1809 5 1 2.8448 2.9531 -1.1719 6 6 2.0929 1.3561 -2.3894 7 7 1.1291 0.4660 -2.4652 8 14 3.0997 1.7739 -3.9063 9 1 4.2766 0.8715 -3.9834 10 1 2.2619 1.5995 -5.1200 11 1 3.5611 3.1829 -3.8217 12 6 2.1287 2.0570 1.1608 13 8 2.6224 3.1649 1.1731 14 6 1.6385 1.4363 2.4436 15 1 0.6864 0.9285 2.2899 16 6 2.6935 0.4689 3.0286 17 6 2.5899 0.6678 4.5248 18 8 3.0382 -0.0899 5.3589 19 7 1.9280 1.8061 4.7951 20 6 1.6431 2.2956 6.1462 21 6 2.2119 1.3157 7.1743 22 6 2.2901 3.6688 6.3381 23 6 0.1297 2.4138 6.3371 24 6 1.5271 2.4951 3.5629 25 1 -0.3634 0.3908 0.9504 26 1 -0.3634 -1.0185 -0.1368 27 1 -0.3633 0.6278 -0.8137 28 1 1.8933 -0.5138 0.8900 29 1 1.8935 -0.5138 -0.8899 30 1 0.9402 0.0263 -3.3088 31 1 2.4554 -0.5611 2.7633 32 1 3.6906 0.7337 2.6768 33 1 3.2901 1.2314 7.0382 34 1 1.9996 1.6797 8.1794 35 1 1.7509 0.3375 7.0375 36 1 1.8849 4.3669 5.6056 37 1 2.0778 4.0333 7.3431 38 1 3.3683 3.5846 6.2020 39 1 -0.3312 1.4356 6.2005 40 1 -0.0822 2.7785 7.3423 41 1 -0.2755 3.1119 5.6048 42 1 2.1991 3.3292 3.3614 43 1 0.4995 2.8493 3.6461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346495818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:44 Heat of formation + Delta-G solvation = -55.901320 kcal Electronic energy + Delta-G solvation = -23754.116542 eV Core-core repulsion = 20414.025269 eV Total energy + Delta-G solvation = -3340.091273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.70395 -38.61178 -36.57392 -35.53687 -34.83538 -31.95265 -30.17791 -29.44157 -27.75752 -27.38602 -26.94427 -25.20591 -22.86890 -21.95419 -21.16601 -18.74996 -18.41747 -17.13193 -16.61743 -16.34981 -15.43267 -15.04808 -14.54621 -14.22129 -14.09677 -13.88095 -13.73502 -13.50412 -13.23559 -12.96536 -12.74516 -12.42336 -12.18598 -12.07946 -11.98262 -11.92264 -11.66516 -11.36697 -11.28932 -11.15460 -11.01479 -10.96282 -10.86561 -10.66465 -10.35789 -10.14485 -9.91684 -9.25177 -8.96871 -8.57637 -8.34462 -7.83823 -6.42926 -3.84502 2.82679 3.07072 3.12730 3.23509 3.28019 3.71779 4.05571 4.49578 4.73455 4.77071 4.87998 4.92330 5.00351 5.14164 5.30276 5.37635 5.48851 5.50803 5.67771 5.68891 5.76117 5.79297 5.82665 5.86699 5.89701 6.02422 6.09018 6.20702 6.23943 6.33895 6.36273 6.50588 6.56869 6.73099 6.82456 7.21341 7.34443 7.41150 7.63776 8.01583 8.41985 8.43133 9.10145 9.36801 9.89801 10.57455 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030992 B = 0.004443 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.251727 B = 6300.569992 C = 6499.885091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.116 3.884 3 N -0.433 5.433 4 C -0.309 4.309 5 H 0.106 0.894 6 C 0.032 3.968 7 N -0.864 5.864 8 Si 0.919 3.081 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.450 3.550 13 O -0.591 6.591 14 C -0.114 4.114 15 H 0.103 0.897 16 C -0.143 4.143 17 C 0.523 3.477 18 O -0.540 6.540 19 N -0.609 5.609 20 C 0.172 3.828 21 C -0.139 4.139 22 C -0.157 4.157 23 C -0.158 4.158 24 C 0.117 3.883 25 H 0.022 0.978 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.035 0.965 29 H 0.104 0.896 30 H 0.268 0.732 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.675 0.019 12.047 12.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.008 4.008 3 N -0.150 5.150 4 C -0.436 4.436 5 H 0.123 0.877 6 C -0.172 4.172 7 N -0.503 5.503 8 Si 0.746 3.254 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.194 1.194 12 C 0.237 3.763 13 O -0.476 6.476 14 C -0.136 4.136 15 H 0.121 0.879 16 C -0.183 4.183 17 C 0.311 3.689 18 O -0.418 6.418 19 N -0.343 5.343 20 C 0.089 3.911 21 C -0.196 4.196 22 C -0.216 4.216 23 C -0.216 4.216 24 C -0.006 4.006 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.106 0.894 28 H 0.053 0.947 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.311 0.067 12.377 12.591 hybrid contribution 0.183 0.033 -0.970 0.987 sum -2.128 0.100 11.408 11.605 Atomic orbital electron populations 1.22070 0.96652 1.01006 1.00473 1.21585 0.94538 0.83614 1.01058 1.43767 1.54765 1.11213 1.05274 1.19750 1.36660 1.05237 0.81936 0.87677 1.25194 0.95903 0.97010 0.99050 1.70143 1.25299 1.27969 1.26869 0.86038 0.79806 0.79263 0.80311 1.20377 1.21115 1.19407 1.19344 0.86184 0.86431 0.84354 1.90506 1.49945 1.21082 1.86106 1.22226 1.00141 0.96465 0.94770 0.87936 1.22373 1.01783 1.01663 0.92509 1.20886 0.76555 0.80265 0.91169 1.90676 1.49865 1.48294 1.52949 1.48473 1.56356 1.23457 1.06062 1.20427 0.94995 0.94545 0.81152 1.22083 1.02551 0.98769 0.96212 1.22188 1.01395 0.95950 1.02027 1.22186 0.94771 1.02493 1.02111 1.21977 1.01415 0.95877 0.81288 0.95889 0.94028 0.89421 0.94679 0.87773 0.92200 0.87862 0.87620 0.91278 0.92748 0.91355 0.91931 0.91575 0.92119 0.92159 0.91485 0.92029 0.88865 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.41 37.16 0.35 -2.45 16 2 C 0.12 2.41 5.00 -4.04 -0.02 2.39 16 3 N -0.43 -10.30 2.64 -114.81 -0.30 -10.60 16 4 C -0.31 -8.10 9.45 -14.93 -0.14 -8.24 16 5 H 0.11 2.95 7.29 -52.48 -0.38 2.56 16 6 C 0.03 0.79 4.93 -17.47 -0.09 0.70 16 7 N -0.86 -21.03 8.68 55.50 0.48 -20.55 16 8 Si 0.92 19.75 29.62 -169.99 -5.03 14.71 16 9 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 10 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 C 0.45 10.11 6.76 -10.99 -0.07 10.04 16 13 O -0.59 -15.19 15.12 5.55 0.08 -15.11 16 14 C -0.11 -1.98 2.56 -90.14 -0.23 -2.21 16 15 H 0.10 1.68 5.56 -51.93 -0.29 1.39 16 16 C -0.14 -2.33 5.69 -26.74 -0.15 -2.48 16 17 C 0.52 8.70 7.84 -10.86 -0.09 8.62 16 18 O -0.54 -10.02 13.99 5.56 0.08 -9.94 16 19 N -0.61 -9.02 2.76 -157.58 -0.43 -9.46 16 20 C 0.17 2.13 1.20 -131.82 -0.16 1.98 16 21 C -0.14 -1.76 7.00 37.15 0.26 -1.50 16 22 C -0.16 -1.74 8.54 37.16 0.32 -1.43 16 23 C -0.16 -1.64 8.49 37.16 0.32 -1.32 16 24 C 0.12 1.83 6.06 -3.13 -0.02 1.81 16 25 H 0.02 0.40 6.08 -51.93 -0.32 0.08 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 1.99 6.67 -51.93 -0.35 1.64 16 28 H 0.03 0.64 5.51 -51.93 -0.29 0.35 16 29 H 0.10 2.38 5.81 -51.93 -0.30 2.08 16 30 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 31 H 0.10 1.54 7.02 -51.93 -0.36 1.18 16 32 H 0.11 1.82 7.89 -51.93 -0.41 1.41 16 33 H 0.07 1.00 7.06 -51.93 -0.37 0.63 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.97 7.08 -51.93 -0.37 0.60 16 36 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.63 7.21 -51.93 -0.37 0.25 16 42 H 0.09 1.63 6.85 -51.93 -0.36 1.28 16 43 H 0.07 1.04 7.12 -51.93 -0.37 0.67 16 LS Contribution 329.26 15.07 4.96 4.96 Total: -1.00 -28.68 329.26 -6.50 -35.18 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.61 Total: 4.89 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 0.28 Total: 5.91 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.26 Total: -40.60 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: 0.16 Total: -25.05 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.68 -6.50 -35.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346495818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.721 kcal (2) G-P(sol) polarization free energy of solvation -28.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds