Wall clock time and date at job start Tue Mar 31 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46986 * 2 1 4 4 C 1.37107 * 119.99656 * 96.37595 * 3 2 1 5 5 H 1.08000 * 119.99816 * 175.54862 * 4 3 2 6 6 C 1.38952 * 119.99937 * 355.54392 * 4 3 2 7 7 N 1.31410 * 120.00085 * 330.02369 * 6 4 3 8 8 Si 1.86795 * 119.99815 * 150.02307 * 6 4 3 9 9 H 1.48499 * 109.47284 * 94.98653 * 8 6 4 10 10 H 1.48504 * 109.47219 * 214.98603 * 8 6 4 11 11 H 1.48500 * 109.47340 * 334.98461 * 8 6 4 12 12 C 1.34773 * 120.00664 * 276.37417 * 3 2 1 13 13 O 1.21285 * 120.00511 * 185.35837 * 12 3 2 14 14 C 1.50703 * 119.99684 * 5.36384 * 12 3 2 15 15 H 1.09001 * 110.85799 * 33.72935 * 14 12 3 16 16 C 1.54626 * 110.99891 * 269.91970 * 14 12 3 17 17 C 1.51288 * 104.25961 * 266.44530 * 16 14 12 18 18 O 1.21277 * 124.94675 * 164.00435 * 17 16 14 19 19 N 1.34422 * 110.10746 * 344.14873 * 17 16 14 20 20 C 1.46501 * 124.34704 * 179.43510 * 19 17 16 21 21 C 1.52995 * 109.47083 * 239.69921 * 20 19 17 22 22 C 1.53005 * 109.47077 * 119.69710 * 20 19 17 23 23 C 1.53006 * 109.47034 * 359.70087 * 20 19 17 24 24 C 1.46760 * 111.30428 * 359.16801 * 19 17 16 25 25 H 1.09007 * 109.46934 * 185.81420 * 1 2 3 26 26 H 1.08995 * 109.47211 * 305.81307 * 1 2 3 27 27 H 1.09006 * 109.47248 * 65.81657 * 1 2 3 28 28 H 1.09002 * 109.47102 * 240.01001 * 2 1 3 29 29 H 1.08993 * 109.47430 * 120.00213 * 2 1 3 30 30 H 0.96994 * 120.00334 * 180.02562 * 7 6 4 31 31 H 1.08999 * 110.49127 * 25.34684 * 16 14 12 32 32 H 1.09005 * 110.48533 * 147.85259 * 16 14 12 33 33 H 1.08999 * 109.47309 * 299.99948 * 21 20 19 34 34 H 1.09003 * 109.47019 * 179.97438 * 21 20 19 35 35 H 1.08994 * 109.47320 * 59.99968 * 21 20 19 36 36 H 1.09003 * 109.46903 * 180.02562 * 22 20 19 37 37 H 1.08999 * 109.47211 * 299.99949 * 22 20 19 38 38 H 1.08999 * 109.46922 * 60.00293 * 22 20 19 39 39 H 1.09003 * 109.46671 * 299.99578 * 23 20 19 40 40 H 1.08999 * 109.47471 * 59.99917 * 23 20 19 41 41 H 1.09003 * 109.47271 * 180.02562 * 23 20 19 42 42 H 1.08997 * 110.24927 * 136.28439 * 24 19 17 43 43 H 1.09006 * 110.24591 * 258.28467 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3711 1.9836 1.1801 5 1 2.7984 2.9754 1.1734 6 6 2.1787 1.3179 2.3845 7 7 1.1954 0.4551 2.5087 8 14 3.3181 1.6495 3.8272 9 1 2.7140 2.6813 4.7080 10 1 3.5183 0.3962 4.5981 11 1 4.6276 2.1348 3.3224 12 6 2.1208 2.0599 -1.1599 13 8 2.6154 3.1672 -1.1730 14 6 1.6207 1.4428 -2.4406 15 1 0.7456 0.8198 -2.2554 16 6 2.7380 0.6338 -3.1391 17 6 3.3568 1.6149 -4.1105 18 8 4.4318 1.4709 -4.6531 19 7 2.5429 2.6709 -4.2821 20 6 2.8427 3.8132 -5.1490 21 6 2.8626 5.0953 -4.3145 22 6 1.7687 3.9266 -6.2328 23 6 4.2100 3.6104 -5.8052 24 6 1.3127 2.5295 -3.4945 25 1 -0.3633 -1.0224 0.1041 26 1 -0.3633 0.6013 0.8333 27 1 -0.3634 0.4210 -0.9375 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.0608 -0.0093 3.3495 31 1 3.4761 0.2959 -2.4118 32 1 2.3155 -0.2160 -3.6753 33 1 1.8886 5.2398 -3.8470 34 1 3.0861 5.9452 -4.9594 35 1 3.6277 5.0145 -3.5424 36 1 1.9920 4.7763 -6.8781 37 1 1.7545 3.0132 -6.8274 38 1 0.7947 4.0711 -5.7653 39 1 4.9751 3.5296 -5.0331 40 1 4.1958 2.6970 -6.3998 41 1 4.4333 4.4606 -6.4499 42 1 1.0682 3.4718 -3.0042 43 1 0.4895 2.2117 -4.1344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346495822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:46 Heat of formation + Delta-G solvation = -54.638502 kcal Electronic energy + Delta-G solvation = -24048.566877 eV Core-core repulsion = 20708.530364 eV Total energy + Delta-G solvation = -3340.036513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.63628 -38.47342 -36.42019 -35.48558 -34.70089 -31.96000 -30.07949 -29.44835 -27.66098 -27.21917 -26.83252 -25.21114 -22.82781 -21.91765 -21.12591 -18.75275 -18.31129 -17.11544 -16.57890 -16.20696 -15.30033 -14.96403 -14.42877 -14.16641 -14.08433 -13.81350 -13.55830 -13.46870 -13.08288 -12.89663 -12.74099 -12.38700 -12.12170 -11.95116 -11.77877 -11.76769 -11.51520 -11.37661 -11.26021 -11.01649 -10.98779 -10.91830 -10.80636 -10.74225 -10.38696 -10.17128 -9.94600 -9.05358 -8.89839 -8.43180 -8.28886 -7.82943 -6.46733 -3.77673 2.95735 3.11074 3.24604 3.28174 3.32990 3.73868 4.08437 4.63614 4.69076 4.81657 4.98051 5.03280 5.15408 5.19409 5.27951 5.44182 5.58249 5.69175 5.69969 5.78398 5.83171 5.86147 5.91792 5.93710 6.06664 6.10239 6.17040 6.20070 6.22007 6.45173 6.50205 6.52351 6.54765 6.68809 6.97171 7.19032 7.39084 7.50633 7.61882 8.04736 8.45507 8.57402 9.14157 9.40466 9.95576 10.55985 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025442 B = 0.005055 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.288771 B = 5537.445974 C = 5836.370572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.114 3.886 3 N -0.436 5.436 4 C -0.312 4.312 5 H 0.105 0.895 6 C 0.036 3.964 7 N -0.856 5.856 8 Si 0.909 3.091 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.446 3.554 13 O -0.584 6.584 14 C -0.119 4.119 15 H 0.109 0.891 16 C -0.143 4.143 17 C 0.527 3.473 18 O -0.541 6.541 19 N -0.598 5.598 20 C 0.175 3.825 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.138 4.138 24 C 0.124 3.876 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.035 0.965 29 H 0.103 0.897 30 H 0.267 0.733 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 0.315 -11.707 12.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.010 4.010 3 N -0.153 5.153 4 C -0.439 4.439 5 H 0.122 0.878 6 C -0.168 4.168 7 N -0.495 5.495 8 Si 0.735 3.265 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.194 1.194 12 C 0.233 3.767 13 O -0.469 6.469 14 C -0.141 4.141 15 H 0.127 0.873 16 C -0.183 4.183 17 C 0.315 3.685 18 O -0.420 6.420 19 N -0.331 5.331 20 C 0.091 3.909 21 C -0.212 4.212 22 C -0.213 4.213 23 C -0.196 4.196 24 C 0.001 3.999 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.381 0.719 -11.861 12.119 hybrid contribution 0.175 -0.091 0.979 0.999 sum -2.206 0.628 -10.882 11.121 Atomic orbital electron populations 1.22072 0.96708 1.00740 1.00899 1.21570 0.94436 0.83866 1.01120 1.43786 1.54967 1.11151 1.05425 1.19647 1.38990 1.02943 0.82289 0.87768 1.25120 0.96111 0.96946 0.98628 1.70176 1.24764 1.28064 1.26506 0.86212 0.81672 0.77856 0.80787 1.20531 1.20739 1.19385 1.19438 0.86324 0.86626 0.84292 1.90525 1.49310 1.21010 1.86045 1.22374 0.99581 0.97236 0.94867 0.87326 1.22310 0.99346 0.98032 0.98660 1.20725 0.83889 0.82617 0.81270 1.90664 1.21034 1.78120 1.52166 1.48217 1.20002 1.19751 1.45145 1.20392 0.95696 0.85529 0.89259 1.22126 1.03297 0.95613 1.00124 1.22182 0.98773 1.02060 0.98288 1.22075 0.95229 1.01282 1.00977 1.21848 0.86160 1.00413 0.91523 0.93991 0.89591 0.95545 0.94701 0.87858 0.92222 0.88011 0.87936 0.92148 0.92130 0.91446 0.91583 0.92429 0.92255 0.91236 0.91503 0.92885 0.89408 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.46 37.16 0.35 -2.41 16 2 C 0.11 2.36 4.96 -4.04 -0.02 2.34 16 3 N -0.44 -10.45 2.64 -114.81 -0.30 -10.75 16 4 C -0.31 -8.32 9.42 -14.93 -0.14 -8.46 16 5 H 0.10 2.99 7.33 -52.49 -0.38 2.61 16 6 C 0.04 0.90 4.83 -17.47 -0.08 0.81 16 7 N -0.86 -20.98 9.05 55.50 0.50 -20.47 16 8 Si 0.91 19.97 29.64 -169.99 -5.04 14.93 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 C 0.45 10.15 6.64 -10.99 -0.07 10.08 16 13 O -0.58 -15.32 15.57 5.55 0.09 -15.24 16 14 C -0.12 -2.02 2.53 -90.14 -0.23 -2.25 16 15 H 0.11 1.64 5.20 -51.93 -0.27 1.37 16 16 C -0.14 -2.31 5.75 -26.74 -0.15 -2.46 16 17 C 0.53 9.55 7.85 -10.86 -0.09 9.47 16 18 O -0.54 -11.04 13.99 5.56 0.08 -10.96 16 19 N -0.60 -9.69 2.76 -157.57 -0.43 -10.12 16 20 C 0.17 2.48 1.20 -131.82 -0.16 2.32 16 21 C -0.15 -2.19 8.49 37.15 0.32 -1.87 16 22 C -0.15 -1.71 8.54 37.16 0.32 -1.39 16 23 C -0.14 -2.02 7.00 37.16 0.26 -1.76 16 24 C 0.12 1.90 5.79 -3.12 -0.02 1.88 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 1.91 6.80 -51.93 -0.35 1.56 16 27 H 0.03 0.44 6.13 -51.93 -0.32 0.12 16 28 H 0.03 0.62 6.57 -51.93 -0.34 0.28 16 29 H 0.10 2.36 5.71 -51.93 -0.30 2.06 16 30 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 31 H 0.10 1.80 7.80 -51.93 -0.41 1.39 16 32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 0.86 7.21 -51.93 -0.37 0.49 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 39 H 0.07 1.20 7.10 -51.93 -0.37 0.83 16 40 H 0.07 1.03 7.04 -51.93 -0.37 0.67 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.48 6.44 -51.93 -0.33 1.14 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 332.12 15.07 5.00 5.00 Total: -1.00 -30.04 332.12 -6.56 -36.61 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.74 Total: 4.71 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 0.28 Total: 6.29 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -0.24 Total: -41.35 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: 0.16 Total: -26.20 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.04 Total: 14.93 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.04 -6.56 -36.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346495822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.032 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds