Wall clock time and date at job start Tue Mar 31 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99907 * 2 1 4 4 C 1.52994 * 109.47431 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47418 * 55.00288 * 4 3 2 6 6 C 1.53007 * 109.47196 * 295.00257 * 4 3 2 7 7 C 1.53000 * 109.47338 * 175.00407 * 4 3 2 8 8 C 1.50706 * 109.47116 * 184.99773 * 7 4 3 9 9 N 1.29937 * 126.28940 * 269.69088 * 8 7 4 10 10 O 1.21298 * 110.25311 * 179.84674 * 9 8 7 11 11 C 1.33648 * 109.81060 * 0.41722 * 10 9 8 12 12 C 1.50695 * 126.55409 * 179.71988 * 11 10 9 13 13 C 1.53003 * 109.47268 * 270.03041 * 12 11 10 14 14 C 1.52995 * 109.47562 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47263 * 179.97438 * 14 13 12 16 16 C 1.50708 * 109.46967 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99552 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99787 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00483 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99681 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47233 * 60.00085 * 20 18 16 22 22 H 1.48505 * 109.46976 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47461 * 299.99845 * 20 18 16 24 24 N 1.31136 * 106.89367 * 359.74603 * 11 10 9 25 25 H 1.09006 * 109.46805 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47050 * 299.99170 * 1 2 3 27 27 H 1.08993 * 109.47573 * 59.99475 * 1 2 3 28 28 H 1.09005 * 109.46870 * 60.00304 * 3 2 1 29 29 H 1.08998 * 109.47611 * 300.00802 * 3 2 1 30 30 H 1.09002 * 109.47469 * 179.97438 * 6 4 3 31 31 H 1.08998 * 109.46963 * 300.00310 * 6 4 3 32 32 H 1.08999 * 109.46642 * 60.00071 * 6 4 3 33 33 H 1.09000 * 109.46884 * 65.00506 * 7 4 3 34 34 H 1.09000 * 109.46955 * 304.99821 * 7 4 3 35 35 H 1.08997 * 109.47473 * 30.02524 * 12 11 10 36 36 H 1.08996 * 109.47493 * 150.03000 * 12 11 10 37 37 H 1.09007 * 109.46886 * 299.99787 * 13 12 11 38 38 H 1.09001 * 109.47337 * 59.99431 * 13 12 11 39 39 H 1.09002 * 109.47189 * 300.00023 * 14 13 12 40 40 H 1.09001 * 109.47307 * 59.99354 * 14 13 12 41 41 H 1.08995 * 109.47063 * 299.99347 * 15 14 13 42 42 H 1.08998 * 109.47007 * 60.00266 * 15 14 13 43 43 H 0.96994 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8508 0.5687 -0.8427 6 6 3.9962 0.5365 1.3064 7 6 4.1571 2.5771 -0.1263 8 6 5.6537 2.4496 -0.2504 9 7 6.5087 2.4436 0.7280 10 8 7.6369 2.3230 0.2989 11 6 7.6084 2.2473 -1.0351 12 6 8.7958 2.0991 -1.9512 13 6 9.3124 3.4845 -2.3446 14 6 10.5175 3.3342 -3.2752 15 6 11.0336 4.7196 -3.6691 16 6 12.2203 4.5715 -4.5862 17 1 12.5713 3.5876 -4.8603 18 6 12.8583 5.6920 -5.0744 19 7 12.4310 6.8901 -4.7403 20 14 14.3295 5.5084 -6.2107 21 1 13.9229 4.7666 -7.4312 22 1 14.8305 6.8530 -6.5931 23 1 15.4045 4.7595 -5.5116 24 7 6.3498 2.3270 -1.3946 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.6886 1.8463 0.8901 29 1 1.6885 1.8465 -0.8899 30 1 5.0828 0.4501 1.3058 31 1 3.6808 1.1525 2.1485 32 1 3.5533 -0.4554 1.3959 33 1 3.9148 3.1644 0.7594 34 1 3.7601 3.0737 -1.0116 35 1 9.5847 1.5497 -1.4376 36 1 8.4978 1.5546 -2.8471 37 1 8.5235 4.0341 -2.8583 38 1 9.6104 4.0291 -1.4487 39 1 11.3065 2.7845 -2.7620 40 1 10.2190 2.7898 -4.1711 41 1 10.2445 5.2689 -4.1825 42 1 11.3320 5.2643 -2.7733 43 1 12.8796 7.6783 -5.0840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351479645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:46 Heat of formation + Delta-G solvation = -17.276832 kcal Electronic energy + Delta-G solvation = -21157.281338 eV Core-core repulsion = 17818.864949 eV Total energy + Delta-G solvation = -3338.416389 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.55967 -38.73537 -36.69172 -36.01359 -34.68263 -33.22096 -31.89145 -29.42167 -28.35187 -27.66196 -25.89142 -25.74772 -23.65480 -22.61766 -21.28131 -20.50660 -20.16829 -18.01757 -17.41371 -16.78191 -16.40822 -16.21466 -15.69491 -15.23752 -14.96434 -14.52708 -14.32920 -13.99495 -13.72144 -13.01210 -12.93465 -12.82296 -12.62360 -12.20235 -12.08428 -11.97061 -11.81012 -11.70655 -11.33096 -11.18015 -11.06598 -11.04498 -10.96141 -10.64013 -10.59449 -10.54580 -10.07510 -9.89516 -9.70841 -9.30459 -9.05439 -8.34139 -5.99191 -4.01859 1.16706 2.19240 2.86789 3.23810 3.33892 3.38423 3.40650 3.67864 3.98477 4.45324 4.46875 4.51462 4.68752 4.88344 4.91369 4.97625 5.01915 5.09125 5.18012 5.23679 5.24028 5.25917 5.35815 5.36587 5.52651 5.56842 5.70106 5.81863 5.88221 5.91595 6.00934 6.05576 6.07593 6.35189 6.68133 6.74037 6.83187 7.10345 7.67756 7.81853 8.00678 8.18366 8.42550 9.05308 9.62250 11.12082 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040912 B = 0.002160 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.232494 B =12957.236971 C =13175.931815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.068 3.932 4 C -0.085 4.085 5 H 0.086 0.914 6 C -0.144 4.144 7 C -0.022 4.022 8 C 0.172 3.828 9 N -0.387 5.387 10 O 0.073 5.927 11 C 0.199 3.801 12 C -0.031 4.031 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.020 3.980 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 N -0.486 5.486 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.216 -12.209 11.196 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.009 4.009 4 C -0.105 4.105 5 H 0.104 0.896 6 C -0.201 4.201 7 C -0.061 4.061 8 C -0.101 4.101 9 N -0.096 5.096 10 O 0.016 5.984 11 C -0.021 4.021 12 C -0.070 4.070 13 C -0.154 4.154 14 C -0.146 4.146 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 N -0.220 5.220 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.650 -12.095 11.735 27.436 hybrid contribution 0.735 0.323 -0.695 1.063 sum -20.915 -11.772 11.039 26.417 Atomic orbital electron populations 1.22747 0.80916 1.02827 1.00020 1.87875 1.19707 1.27794 1.95421 1.22519 0.92960 0.84848 1.00524 1.21050 0.93169 0.95705 1.00587 0.89590 1.21804 1.01257 1.01169 0.95902 1.19899 0.83658 0.97914 1.04624 1.25566 0.99562 1.00914 0.84057 1.74611 0.90228 1.21306 1.23416 1.85295 1.24777 1.65191 1.23159 1.29150 0.95935 0.93914 0.83092 1.20538 0.89236 1.01763 0.95482 1.21734 0.99755 0.92907 1.00980 1.21634 0.94407 1.01564 0.97018 1.19101 0.95796 0.90421 0.96419 1.21226 1.13697 0.92436 1.28638 0.92671 1.25033 0.97488 0.95386 0.96620 1.69953 1.41088 0.97464 1.45004 0.86657 0.82996 0.77100 0.81229 1.20254 1.21333 1.20241 1.71922 1.01754 1.20901 1.27380 0.89589 0.94076 0.93973 0.92939 0.92824 0.92719 0.92549 0.91691 0.88931 0.88388 0.88078 0.87294 0.91499 0.91667 0.92897 0.92908 0.96573 0.96563 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.54 10.24 -35.23 -0.36 -3.90 16 3 C 0.07 0.52 5.32 37.15 0.20 0.72 16 4 C -0.09 -0.78 2.62 -90.62 -0.24 -1.02 16 5 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 6 C -0.14 -1.38 8.90 37.16 0.33 -1.05 16 7 C -0.02 -0.21 5.32 -27.88 -0.15 -0.36 16 8 C 0.17 2.27 6.68 -156.38 -1.04 1.22 16 9 N -0.39 -5.49 11.48 30.90 0.35 -5.13 16 10 O 0.07 1.04 11.31 18.09 0.20 1.24 16 11 C 0.20 2.72 7.77 -13.06 -0.10 2.62 16 12 C -0.03 -0.38 5.84 -27.88 -0.16 -0.54 16 13 C -0.12 -1.79 5.20 -26.73 -0.14 -1.93 16 14 C -0.11 -2.05 5.15 -26.73 -0.14 -2.19 16 15 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 16 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 20 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 N -0.49 -7.03 11.55 -9.87 -0.11 -7.14 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.61 6.85 -51.93 -0.36 0.25 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -31.98 361.20 -7.13 -39.11 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -7.49 Total: -5.70 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -0.88 Total: -14.25 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.98 Total: -38.44 kcal Atomic # 8 Polarization: -2.50 SS G_CDS: -0.16 Total: -2.66 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.98 -7.13 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351479645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.833 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds