Wall clock time and date at job start Tue Mar 31 2020 05:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 113.99741 * 2 1 4 4 C 1.53002 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47507 * 305.00359 * 4 3 2 6 6 C 1.53005 * 109.46888 * 65.00216 * 4 3 2 7 7 C 1.53001 * 109.47323 * 184.99908 * 4 3 2 8 8 C 1.50706 * 109.46848 * 175.00120 * 7 4 3 9 9 N 1.29946 * 126.28426 * 270.02363 * 8 7 4 10 10 O 1.21309 * 110.24521 * 179.68915 * 9 8 7 11 11 C 1.33639 * 109.80928 * 0.46841 * 10 9 8 12 12 C 1.50706 * 126.55037 * 179.79972 * 11 10 9 13 13 C 1.52997 * 109.47238 * 269.69219 * 12 11 10 14 14 C 1.52996 * 109.46947 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46891 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46994 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99838 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99810 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99856 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00262 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46945 * 90.00078 * 20 18 16 22 22 H 1.48497 * 109.47479 * 210.00219 * 20 18 16 23 23 H 1.48504 * 109.47204 * 330.00549 * 20 18 16 24 24 N 1.31128 * 106.90120 * 359.54177 * 11 10 9 25 25 H 1.09009 * 109.47257 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47066 * 299.99336 * 1 2 3 27 27 H 1.08994 * 109.47525 * 59.99702 * 1 2 3 28 28 H 1.09002 * 109.47567 * 60.00394 * 3 2 1 29 29 H 1.08994 * 109.47819 * 300.00017 * 3 2 1 30 30 H 1.09000 * 109.46820 * 300.00233 * 6 4 3 31 31 H 1.09003 * 109.46930 * 59.99790 * 6 4 3 32 32 H 1.09000 * 109.46989 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.46965 * 55.00315 * 7 4 3 34 34 H 1.08999 * 109.47236 * 295.00512 * 7 4 3 35 35 H 1.09001 * 109.46953 * 29.68831 * 12 11 10 36 36 H 1.09000 * 109.47318 * 149.68429 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99686 * 13 12 11 38 38 H 1.09004 * 109.47261 * 59.99705 * 13 12 11 39 39 H 1.08992 * 109.47554 * 299.99696 * 14 13 12 40 40 H 1.08996 * 109.47261 * 60.00229 * 14 13 12 41 41 H 1.08998 * 109.47844 * 299.99997 * 15 14 13 42 42 H 1.09001 * 109.47248 * 60.00689 * 15 14 13 43 43 H 0.96999 * 119.99896 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9962 0.5365 -1.3065 7 6 4.1572 2.5769 0.1263 8 6 5.6537 2.4493 0.2505 9 7 6.3263 2.3303 1.3559 10 8 7.5126 2.2427 1.1181 11 6 7.7163 2.3094 -0.2010 12 6 9.0454 2.2437 -0.9084 13 6 9.6109 3.6568 -1.0636 14 6 10.9605 3.5900 -1.7812 15 6 11.5258 5.0032 -1.9370 16 6 12.8554 4.9374 -2.6433 17 1 13.2569 3.9831 -2.9506 18 6 13.5594 6.0954 -2.8970 19 7 14.7195 6.0380 -3.5138 20 14 12.8646 7.7461 -2.3660 21 1 13.3295 8.0595 -0.9909 22 1 13.3311 8.8029 -3.2991 23 1 11.3808 7.6882 -2.3856 24 7 6.5383 2.4374 -0.7626 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.5531 -0.4554 -1.3960 31 1 3.6808 1.1527 -2.1485 32 1 5.0828 0.4508 -1.3062 33 1 3.7602 3.0735 1.0117 34 1 3.9148 3.1645 -0.7592 35 1 9.7380 1.6373 -0.3247 36 1 8.9112 1.7958 -1.8930 37 1 8.9183 4.2633 -1.6473 38 1 9.7451 4.1047 -0.0789 39 1 11.6529 2.9838 -1.1973 40 1 10.8267 3.1421 -2.7658 41 1 10.8333 5.6093 -2.5212 42 1 11.6596 5.4516 -0.9525 43 1 15.2145 6.8528 -3.6926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351479646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:48 Heat of formation + Delta-G solvation = -13.659011 kcal Electronic energy + Delta-G solvation = -21250.814076 eV Core-core repulsion = 17912.554567 eV Total energy + Delta-G solvation = -3338.259509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.62390 -38.76907 -36.77179 -36.10740 -34.68720 -33.25411 -32.00673 -29.83250 -28.36286 -27.64156 -26.07542 -25.88746 -23.64941 -22.53817 -21.42169 -20.38230 -20.12040 -18.07255 -17.59430 -16.74763 -16.65906 -16.41996 -15.75275 -15.30907 -14.99068 -14.62039 -14.24041 -13.95349 -13.74410 -13.14323 -12.89349 -12.85848 -12.67956 -12.54717 -12.27224 -12.01588 -11.83131 -11.78046 -11.38502 -11.33007 -11.20550 -11.07214 -10.99649 -10.89493 -10.65782 -10.11753 -10.07908 -9.90634 -9.73743 -9.51009 -9.17919 -8.53641 -6.04250 -4.02246 1.10347 2.12973 2.80301 3.19910 3.30946 3.38575 3.42199 3.62047 3.92816 4.41335 4.45461 4.51350 4.65499 4.81078 4.88630 4.92288 4.98782 5.04812 5.11369 5.13345 5.20708 5.23569 5.30178 5.35400 5.49099 5.52003 5.69411 5.79590 5.81127 5.86098 5.93008 5.96943 6.07291 6.21100 6.52189 6.62727 6.70945 6.88447 7.29166 7.42083 7.79536 8.12089 8.53664 9.00829 9.58514 11.09187 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037886 B = 0.002304 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.874427 B =12151.409418 C =12226.502359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.068 3.932 4 C -0.085 4.085 5 H 0.081 0.919 6 C -0.143 4.143 7 C -0.023 4.023 8 C 0.173 3.827 9 N -0.389 5.389 10 O 0.074 5.926 11 C 0.197 3.803 12 C -0.031 4.031 13 C -0.118 4.118 14 C -0.101 4.101 15 C -0.016 4.016 16 C -0.521 4.521 17 H 0.072 0.928 18 C 0.065 3.935 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 N -0.482 5.482 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.011 0.989 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.683 -10.426 7.911 29.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.009 4.009 4 C -0.104 4.104 5 H 0.099 0.901 6 C -0.200 4.200 7 C -0.061 4.061 8 C -0.100 4.100 9 N -0.098 5.098 10 O 0.016 5.984 11 C -0.023 4.023 12 C -0.070 4.070 13 C -0.157 4.157 14 C -0.138 4.138 15 C -0.053 4.053 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.543 5.543 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.190 1.190 24 N -0.216 5.216 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.096 -10.451 8.299 30.204 hybrid contribution -0.289 1.239 0.249 1.297 sum -27.385 -9.212 8.547 30.131 Atomic orbital electron populations 1.22750 0.80903 1.02848 1.00014 1.87876 1.19714 1.27764 1.95416 1.22524 0.93005 0.84868 1.00493 1.21064 0.93148 0.95516 1.00718 0.90053 1.21786 1.01547 1.00958 0.95703 1.19907 0.83524 0.98052 1.04662 1.25577 0.99628 1.00835 0.83971 1.74615 0.89665 1.21466 1.24081 1.85296 1.20277 1.65372 1.27413 1.29154 0.98305 0.93917 0.80937 1.20512 0.85018 1.01544 0.99910 1.21761 0.99031 0.92864 1.02008 1.21456 0.92777 1.00358 0.99257 1.19584 0.96719 0.92523 0.96465 1.21157 1.02391 0.95080 1.37251 0.90975 1.25043 0.94674 0.99173 0.94691 1.69916 1.13793 1.28421 1.42162 0.86779 0.80010 0.83903 0.78589 1.20323 1.21424 1.19042 1.71937 0.98428 1.20828 1.30374 0.89567 0.94072 0.93980 0.93058 0.92762 0.91891 0.92329 0.92318 0.89008 0.88325 0.87939 0.87136 0.91481 0.91681 0.92281 0.92273 0.96611 0.97044 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.45 10.24 -35.23 -0.36 -3.81 16 3 C 0.07 0.50 5.32 37.16 0.20 0.70 16 4 C -0.08 -0.74 2.62 -90.62 -0.24 -0.98 16 5 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.14 -1.36 8.90 37.16 0.33 -1.03 16 7 C -0.02 -0.20 5.32 -27.88 -0.15 -0.35 16 8 C 0.17 2.18 6.66 -156.37 -1.04 1.14 16 9 N -0.39 -5.40 12.16 30.90 0.38 -5.03 16 10 O 0.07 1.01 11.31 18.11 0.20 1.21 16 11 C 0.20 2.54 7.77 -13.05 -0.10 2.43 16 12 C -0.03 -0.35 5.84 -27.88 -0.16 -0.51 16 13 C -0.12 -1.68 5.20 -26.73 -0.14 -1.82 16 14 C -0.10 -1.80 5.15 -26.73 -0.14 -1.94 16 15 C -0.02 -0.36 4.04 -27.88 -0.11 -0.47 16 16 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 19 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 20 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 24 N -0.48 -6.52 10.88 -9.87 -0.11 -6.63 16 25 H 0.09 0.40 8.14 -51.92 -0.42 -0.03 16 26 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.60 7.82 -51.93 -0.41 0.20 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.65 6.84 -51.93 -0.36 0.30 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 42 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 357.58 15.07 5.39 5.39 Total: -1.00 -32.41 357.58 -6.72 -39.13 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -7.46 Total: -5.54 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -0.87 Total: -14.73 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 1.04 Total: -38.68 kcal Atomic # 8 Polarization: -2.44 SS G_CDS: -0.16 Total: -2.59 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.41 -6.72 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351479646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.475 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds